ClCG05G011490 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G011490
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	High mobility group protein HMGI-C
Location	CG_Chr05 : 13694399 .. 13696256 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTTTTGAACAGCAGTAGTAGGTTCCTCTCTCTATCTCTAGCTGCTTTCTGGGTGACTCTTCTCTTCTCTATAGGCTTCAGGAAAATAATAGCTTTCTTTTTCAATTTTCAATGGCGACTGAAGAGGTTAACAAACCTCCATCACTCCCCCCATACCCTGAGGTACATTCGTTTCCTCTTTATCTCTTCCAATTTCAGATACCCATCTACCAAAAATGATGATGTGTCTTGTTTTTTTTCTCTTAATTTTTTTTTTTTGGGTTTGGACCCACTACCTTTAATTTGTTGAATCTACTCTGGGTTTGTGTGTTTATGTGTTAATTTGTTCTTCAATTAGGGTTCCTTGTGATTTGTGTCTGATTTTGTATCTTGTTTAGTGAATTTCGTTTTTTTGGTTTGATTTTTTTTTTTTTTCTGTGGTGATTTAGTGAACAGGGGAAAAATCCTTCTTTCCTTGTGTTTTCTTTCATTTCCTTCTCGAATCTGAGTGTTCCTTTTTCGAAAATTTTTCGAAGGGTTCTTTTTTTTTTCCCCCCCCCTTCAATGTCACTAAAATTTGATTGATTTAACTGAGATTTCTCATTTATTTAGTTCATGTTAGAATCTTACTTGTTAGATGCAATTTTTGAAGACAGATAAATGAACTTCTGATTTACTTCTGCTTCCTCTATTATTTGTTTCTATTCTTATTTTCAATTATACTTCACTTCCATCATTCTTTAGGAAGTGGTTTTGAGTTTTGAATTTTGTTTGAATGAGAAGAGATACTTTTTTTTTTTTTTTTTGCTAGGATTTTCTCGAAAAATAAGAATTGTTAAAAGATTTGAAGATGTTAGATCTTTTCTTAACTGTGAGGTAAAGCGAAATCTTGAGTAAAAATATGATTTGAAATCATGTTTGATTTTAGATTCAGATCTTTTTACTTCAAAGAGATAACAAACAAAACAAGTTTATTTAAAATGTAATTTGATTTGAATTCTATTGAAATGCTGGGAAAGTAGAATTCTGATTGATTGGCTATTAAGTTTCTTTTTAGATCTGCAAATCATTGAAGCTGGTAAAAGTGGATCATGAAAATGAAAGGAAAAGTTTGAATTGAAACACCATTTTTTTTTAAGGAGGTGTTTTAAATATTGCAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGATAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCAACATATGGGAATTTGCCCACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCCACAGCACCTCCCCGGCGAGGACGGGGCAGGCCTCCAAAACCGAAGGGTCCTCTGCCACCAAATTCTGCTTTATCCCCGCCAAAGCCGAGAGGCCGCCCGCCGAAGGACCCCAATGCACCTCCAAAACCACCAACGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCCTCAGCCAGCAACCACGCCAGCTCCGCCAGCACCAAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTCCATTGACTGAAGTTAGCGTTCAACAATAGATTGTTGCAGTGCAGTGTTAATTGGTAGTGCCTTGACTCTCTCTCTTATCTCTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCAGTGTTTCGA

mRNA sequence

TTTTTTTTTTTTGAACAGCAGTAGTAGGTTCCTCTCTCTATCTCTAGCTGCTTTCTGGGTGACTCTTCTCTTCTCTATAGGCTTCAGGAAAATAATAGCTTTCTTTTTCAATTTTCAATGGCGACTGAAGAGGTTAACAAACCTCCATCACTCCCCCCATACCCTGAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGATAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCAACATATGGGAATTTGCCCACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCCACAGCACCTCCCCGGCGAGGACGGGGCAGGCCTCCAAAACCGAAGGGTCCTCTGCCACCAAATTCTGCTTTATCCCCGCCAAAGCCGAGAGGCCGCCCGCCGAAGGACCCCAATGCACCTCCAAAACCACCAACGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCCTCAGCCAGCAACCACGCCAGCTCCGCCAGCACCAAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTCCATTGACTGAAGTTAGCGTTCAACAATAGATTGTTGCAGTGCAGTGTTAATTGGTAGTGCCTTGACTCTCTCTCTTATCTCTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCAGTGTTTCGA

Coding sequence (CDS)

ATGGCGACTGAAGAGGTTAACAAACCTCCATCACTCCCCCCATACCCTGAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGATAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCAACATATGGGAATTTGCCCACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCCACAGCACCTCCCCGGCGAGGACGGGGCAGGCCTCCAAAACCGAAGGGTCCTCTGCCACCAAATTCTGCTTTATCCCCGCCAAAGCCGAGAGGCCGCCCGCCGAAGGACCCCAATGCACCTCCAAAACCACCAACGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCCTCAGCCAGCAACCACGCCAGCTCCGCCAGCACCAAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTCCATTGACTGAAGTTAGCGTTCAACAATAG

Protein sequence

MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNAPPKPPTPVQMKVSSGTGKPRGRPRKFPQPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ

Homology

[Close]

BLAST of ClCG05G011490 vs. Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.6e-65
Identity = 123/180 (68.33%), Postives = 139/180 (77.22%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATEEVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPD--ATVLGSHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           N MK SGEL F +NNYMK DP APP+RGRGRPPKPK PLPP + +SPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQPATTPAPPA-PSGRPRGRPPKVKAPLTEVSVQ 180
           PPK P   + K + G+G+PRGRP+K P+     AP A  SGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PPKSP---KAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSVE 175

[Close]

BLAST of ClCG05G011490 vs. Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.3e-52
Identity = 102/156 (65.38%), Postives = 116/156 (74.36%), Query Frame = 1


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SGEL F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNAPPKPPTPVQMKVSSGTGKPRGRPR 144
           P+RGRGRPPKPK PLPP + +SPP+PRGRPPKDPNAPPK P   + K +  TG+PRGRP+
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSP---KAKATPATGRPRGRPK 120

Query: 145 KFPQPATTPAPPAPS-GRPRGRPPKVKAPLTEVSVQ 180
           K  +    P+P A S GRPRGRPPKVK  LTEVSV+
Sbjct: 121 KVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSVE 151

[Close]

BLAST of ClCG05G011490 vs. Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.1e-42
Identity = 93/178 (52.25%), Postives = 113/178 (63.48%), Query Frame = 1


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALS-----------PPKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K     ++A +           PP+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPTPVQMKVSSGTGKPRGRPRKFPQ-PATTPAPPAPSG------RPRGRPPKVK 171
            P  P  P Q KV +G+G+PRGRP K P+  + T A P P+       R RGRPPKVK
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of ClCG05G011490 vs. Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-41
Identity = 100/188 (53.19%), Postives = 112/188 (59.57%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGELVFWKNNYMKRD-PTAPPRRGRGRPPK---PKGPLP-PNSALSPPKPRGRPP 120
             MK SGELVF KNNY +   P APP+RGRGRPPK   P  P P P S  S  + RGRPP
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGRPP 120

Query: 121 KDPNAPPKPPTPVQMK-VSSGTGKPRGRPRK--------FPQPATTPAP----PAPSGRP 171
           K      K P    +K  ++G  KPRGRP K         P P+  PAP      P  R 
Sbjct: 121 K-----AKSPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRG 180

HSP 2 Score: 30.4 bits (67), Expect = 2.5e+01
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1


Query: 80  DPTAPPRRGRGRPPKPKGPLPPNSA 105
           D + P +RGRGRPPK +  +P  +A
Sbjct: 167 DGSTPGKRGRGRPPKVRPAVPSETA 191

[Close]

BLAST of ClCG05G011490 vs. Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 50/163 (30.67%), Postives = 68/163 (41.72%), Query Frame = 1


Query: 10  PSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTY-GNLPTGHSSLLTHHLNMMKASGE 69
           P+  PY EM+  AI +L    GS+   I+K++E  +   LP     LL   L  + A G+
Sbjct: 48  PTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGK 107

Query: 70  LVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNAPPKPPTPV 129
           L   KN+Y     T P  + +  P KPK       A + PK +      P   PKP    
Sbjct: 108 LTKVKNSYKLSSATKPNPKPKAAPKKPKTGAKKPKAAAKPKAKTPAKAKPATKPKPAAKP 167

Query: 130 QMKVSSGT-GKPRGRPRKFPQPATTPAPPAPSGRPRGRPPKVK 171
           +  V   T  KP+ +P    +P T  A P P  +  GR    K
Sbjct: 168 KAVVKPKTPAKPKAKPAAKAKPKTAGAKPKPLAKKAGRAKAAK 210

[Close]

BLAST of ClCG05G011490 vs. TrEMBL
Match: A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 1.4e-94
Identity = 167/180 (92.78%), Postives = 172/180 (95.56%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP +S +S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPP PVQMKVSSGTGKPRGRPRKFPQ A+TPAPPAPSGRPRGRPPKVKA LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of ClCG05G011490 vs. TrEMBL
Match: Q42461_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 7.6e-72
Identity = 132/180 (73.33%), Postives = 149/180 (82.78%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATEEVNKPPSLPPYPEM+ +A++ALN  +GSNKS ISKYIESTYG LP GH++LL HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           N MK SGELVF KNNYMK DP APP+RGRGRPPKPK PLPP + LSPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQ-PATTPAPPAPSGRPRGRPPKVKAPLTEVSVQ 180
           PPK P   + KVS+G+G+PRGRP+K  + PA     P PSGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PPKSP---KTKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEVSVE 177

[Close]

BLAST of ClCG05G011490 vs. TrEMBL
Match: Q42492_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.2e-70
Identity = 132/180 (73.33%), Postives = 148/180 (82.22%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATEEVNKPPSLPPY EMI +A+++LN  NGSNKS ISKYIEST G LP GHS+LL HHL
Sbjct: 1   MATEEVNKPPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           N MK SGELVF KNNYMK DPT+PP+RGRGRPPKPK PLPP + LSPP+PRGRPPKDPNA
Sbjct: 61  NKMKESGELVFLKNNYMKPDPTSPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQPATTPAP-PAPSGRPRGRPPKVKAPLTEVSVQ 180
           P K P   + KVS+G+G+PRGRP+K  + A   AP P PSGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PTKSP---KAKVSTGSGRPRGRPKKIARSAAVVAPTPGPSGRPRGRPPKVKPQLTEVSVE 177

[Close]

BLAST of ClCG05G011490 vs. TrEMBL
Match: M5XB09_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.6e-69
Identity = 133/186 (71.51%), Postives = 149/186 (80.11%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATEEVNKP SLPPYPEMI +AIEALN  NGSNKS+ISK+IESTYG+LP GH+SLL+HHL
Sbjct: 1   MATEEVNKPLSLPPYPEMILKAIEALNEKNGSNKSSISKFIESTYGDLPAGHNSLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           N MK SGELVFWKNNY K DP APPRRGRGRPPKPK  LPP++ L P +PRGRPPKDPNA
Sbjct: 61  NKMKDSGELVFWKNNYTKPDPNAPPRRGRGRPPKPKDSLPPDAVLGPTRPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQP-----ATTPAPPAPSGRPRGRPPKVKAPLT- 180
           PPKPP   ++KVSSG+GKPRGRPRK  +P      +        GRPRGRPPKVK  L+ 
Sbjct: 121 PPKPP---KVKVSSGSGKPRGRPRKMAKPTGGLSGSATVTDTMPGRPRGRPPKVKDSLSA 180

[Close]

BLAST of ClCG05G011490 vs. TrEMBL
Match: A0A067KDV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13448 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-67
Identity = 132/191 (69.11%), Postives = 148/191 (77.49%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVN+PPSLPPYPEMI  AIEALN  NGSNK++ISKYIES YG LP  H++LLTHHL
Sbjct: 1   MAAEEVNRPPSLPPYPEMILAAIEALNEQNGSNKTSISKYIESKYGELPASHTTLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           N MK +GELVFWKNNYMK DP+APPRRGRGRPPKPK P PP + L+P +PRGRPPKDPNA
Sbjct: 61  NRMKDTGELVFWKNNYMKPDPSAPPRRGRGRPPKPKDPSPPGAILAPARPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQP-------ATTPAPPAP----SGRPRGRPPKV 180
           PPKP    Q   S+G+GKPRGRPRK  +P       +TT A   P    +GRPRGRPPKV
Sbjct: 121 PPKPMK--QKVTSTGSGKPRGRPRKMARPTGGMSGTSTTTATTVPMATGTGRPRGRPPKV 180

[Close]

BLAST of ClCG05G011490 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-43
Identity = 93/178 (52.25%), Postives = 113/178 (63.48%), Query Frame = 1


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALS-----------PPKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K     ++A +           PP+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPTPVQMKVSSGTGKPRGRPRKFPQ-PATTPAPPAPSG------RPRGRPPKVK 171
            P  P  P Q KV +G+G+PRGRP K P+  + T A P P+       R RGRPPKVK
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of ClCG05G011490 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 90.9 bits (224), Expect = 8.7e-19
Identity = 68/194 (35.05%), Postives = 83/194 (42.78%), Query Frame = 1


Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNYMKRDPTAPPR----------------RGRGRPPKPKGPLPPNSALSPPK-PRGRPP 132
           K +Y     + PP                 R          P+   SA  P K  RGRPP
Sbjct: 126 KKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPP 185

Query: 133 KDPNAPPKPPTPVQMKVSSGTGKPRGRPRKFPQPATTPAP-PAP--------SGRPR--G 179
           K    P   P P+Q    +   +  G+P    Q   +P P P P         GRPR  G
Sbjct: 186 KP--KPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPRKNG 245

[Close]

BLAST of ClCG05G011490 vs. TAIR10
Match: AT1G48620.1 (AT1G48620.1 high mobility group A5)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-17
Identity = 59/160 (36.88%), Postives = 74/160 (46.25%), Query Frame = 1


Query: 3   TEEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 62
           T  V   PS+  PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL
Sbjct: 64  TSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHL 123

Query: 63  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKP-----RGRPP 122
             +K SG LV  K +Y  +  + PP      PP P    P   +L PP+        +P 
Sbjct: 124 KTLKTSGILVMVKKSY--KLASTPP------PPPPTSVAP---SLEPPRSDFIVNENQPL 183

Query: 123 KDPNAPPKPPTPVQMKVSSGTGKPRGRPRKFPQPATTPAP 156
            DP      P  ++        + RGRP K       P P
Sbjct: 184 PDPVLASSTPQTIK--------RGRGRPPKAKPDVVQPQP 204

HSP 2 Score: 37.4 bits (85), Expect = 1.1e-02
Identity = 41/158 (25.95%), Postives = 63/158 (39.87%), Query Frame = 1


Query: 4   EEVN-KPPSLPPYPEMIFRAIEALNSDNGSNKS-----TISKYIESTY--GNLPTGHSSL 63
           EE+  +PP LP  P+   +        +G++ +     ++S  +E+    G  P+G ++ 
Sbjct: 223 EEIQIQPPQLPLQPQQPVKRPPGRPRKDGTSPTVKPAASVSGGVETVKRRGRPPSGRAAG 282

Query: 64  LTHHLNMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSP-------- 123
                 ++ A   +  +  N   R    P R   G       P PP + +          
Sbjct: 283 RERKPIVVSAPASVFPYVANGGVRRRGRPKRVDAGGASSVAPPPPPPTNVESGGEEVAVK 342

Query: 124 PKPRGRPPKDPNAPPKPPTPVQMKVSSGTGKPRGRPRK 146
            + RGRPPK      KP  P  M+  + TGKP GRPRK
Sbjct: 343 KRGRGRPPKIGGVIRKPMKP--MRSFARTGKPVGRPRK 378

[Close]

BLAST of ClCG05G011490 vs. TAIR10
Match: AT1G44191.1 (AT1G44191.1 ECA1 gametogenesis related family protein)

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-11
Identity = 35/103 (33.98%), Postives = 47/103 (45.63%), Query Frame = 1


Query: 78  KRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKP--------RGRPPKDPNAPPKPPTPVQ 137
           K+ P +PP+     P   K P PP  + SPPKP        +  PP  P+ PP  P+P +
Sbjct: 185 KKSPPSPPKPSSPPPSPKKSPPPPKPSPSPPKPSTPPPTPKKSPPPPKPSQPPPKPSPPR 244

Query: 138 MKVSSGTGKPRGRPRKFPQPATTPAPPAPSGRPRGRPPKVKAP 173
            K S  T KP   P     P+  P+PP P+ +    PP   +P
Sbjct: 245 RKPSPPTPKPSTTP-----PSPKPSPPRPTPKKSPPPPTTPSP 282

HSP 2 Score: 62.0 bits (149), Expect = 4.3e-10
Identity = 40/100 (40.00%), Postives = 45/100 (45.00%), Query Frame = 1


Query: 78  KRDPTAPPRRGRGRPPKPK-GPLPPNSALSPPKPRGRPP---KDPNAPPKPPT-PVQMKV 137
           K+ P  PP +    PP PK  P PP  + SPPKP   PP   K P +PPKP + P   K 
Sbjct: 146 KKSP--PPPKPSSPPPSPKKSPPPPKPSPSPPKPSTPPPTPKKSPPSPPKPSSPPPSPKK 205

Query: 138 SSGTGKPRGRPRKFPQPATTPAPPAPSGRPRGRPPKVKAP 173
           S    KP   P K   P  TP    P  +P   PPK   P
Sbjct: 206 SPPPPKPSPSPPKPSTPPPTPKKSPPPPKPSQPPPKPSPP 243

HSP 3 Score: 58.9 bits (141), Expect = 3.7e-09
Identity = 34/99 (34.34%), Postives = 45/99 (45.45%), Query Frame = 1


Query: 81  PTAPPRRGRGRPPKPKGPLP---PNSALSPPKPRGRPPKDPNAPPKP-PTPVQMKVSSGT 140
           P++PP   +  PP PK   P   P  +  PPKP   PP    +PP P P+P   K S+  
Sbjct: 122 PSSPPPIPKKSPPPPKPSSPPPTPKKSPPPPKPSSPPPSPKKSPPPPKPSPSPPKPSTPP 181

Query: 141 GKPRGRPRKFPQPATTPAPP---APSGRPRGRPPKVKAP 173
             P+  P   P+P++ P  P    P  +P   PPK   P
Sbjct: 182 PTPKKSPPSPPKPSSPPPSPKKSPPPPKPSPSPPKPSTP 220

HSP 4 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 35/95 (36.84%), Postives = 41/95 (43.16%), Query Frame = 1


Query: 81  PTAPPRRGRGRPPKPKGPLP---PNSALSPPKPRGRPPKDPNAPPKPPTPVQMKVSSGTG 140
           P+ PPR  +  PP PK   P   P  +  PPKP   PP    +PP PP P     S    
Sbjct: 106 PSPPPRTPKKSPPPPKPSSPPPIPKKSPPPPKPSSPPPTPKKSPP-PPKPSSPPPSPKKS 165

Query: 141 KPRGRPRKFPQPATTPAPPAPSGRPRGRPPKVKAP 173
            P  +P   P   +TP PP P   P   PPK  +P
Sbjct: 166 PPPPKPSPSPPKPSTP-PPTPKKSPPS-PPKPSSP 197

HSP 5 Score: 49.3 bits (116), Expect = 2.9e-06
Identity = 33/101 (32.67%), Postives = 40/101 (39.60%), Query Frame = 1


Query: 85  PRRGRGRPPKPKG---PLPPNSALSPPKPRGRPPKDPNAPP------KPPTPVQMKVSSG 144
           P   +  PP PK    P  P  +  PPKP   PP    +PP       PPTP +      
Sbjct: 94  PLSPKKSPPSPKPSPPPRTPKKSPPPPKPSSPPPIPKKSPPPPKPSSPPPTPKKSPPPPK 153

Query: 145 TGKPRGRPRKF-PQPATTPAPPAPS---GRPRGRPPKVKAP 173
              P   P+K  P P  +P+PP PS     P+  PP    P
Sbjct: 154 PSSPPPSPKKSPPPPKPSPSPPKPSTPPPTPKKSPPSPPKP 194

[Close]

BLAST of ClCG05G011490 vs. TAIR10
Match: AT5G08780.1 (AT5G08780.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 58.2 bits (139), Expect = 6.2e-09
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1


Query: 6   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKA 65
           +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGELVFWKNN 76
             E++   NN
Sbjct: 109 KREILCDCNN 118

[Close]

BLAST of ClCG05G011490 vs. NCBI nr
Match: gi|659114297|ref|XP_008456999.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis melo])

HSP 1 Score: 359.8 bits (922), Expect = 2.8e-96
Identity = 170/180 (94.44%), Postives = 174/180 (96.67%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP +SA+SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPP PVQMKVSSGTGKPRGRPRKFPQ ATTPAPPAPSGRPRGRPPKVKA LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of ClCG05G011490 vs. NCBI nr
Match: gi|449456239|ref|XP_004145857.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus])

HSP 1 Score: 353.6 bits (906), Expect = 2.0e-94
Identity = 167/180 (92.78%), Postives = 172/180 (95.56%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP +S +S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPP PVQMKVSSGTGKPRGRPRKFPQ A+TPAPPAPSGRPRGRPPKVKA LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of ClCG05G011490 vs. NCBI nr
Match: gi|1181589|dbj|BAA11766.1| (high mobility group protein [Canavalia gladiata])

HSP 1 Score: 278.1 bits (710), Expect = 1.1e-71
Identity = 132/180 (73.33%), Postives = 149/180 (82.78%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATEEVNKPPSLPPYPEM+ +A++ALN  +GSNKS ISKYIESTYG LP GH++LL HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           N MK SGELVF KNNYMK DP APP+RGRGRPPKPK PLPP + LSPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQ-PATTPAPPAPSGRPRGRPPKVKAPLTEVSVQ 180
           PPK P   + KVS+G+G+PRGRP+K  + PA     P PSGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PPKSP---KTKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEVSVE 177

[Close]

BLAST of ClCG05G011490 vs. NCBI nr
Match: gi|1009126639|ref|XP_015880263.1| (PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba])

HSP 1 Score: 273.5 bits (698), Expect = 2.7e-70
Identity = 135/186 (72.58%), Postives = 146/186 (78.49%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT EVNK  SLPPYPEMI RAIEALN  NGSNKSTISKYIESTYG LP GHS LL+HHL
Sbjct: 1   MATGEVNKRQSLPPYPEMIIRAIEALNDKNGSNKSTISKYIESTYGELPAGHSQLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           N MK SGELVFWKNNY K DP APPRRGRGRPPKPK PLPP ++L P +PRGRPPKDP+A
Sbjct: 61  NRMKESGELVFWKNNYTKADPNAPPRRGRGRPPKPKEPLPPGASLGPMRPRGRPPKDPDA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQP------ATTPAPPAPSGRPRGRPPKVKAPLT 180
           PPK   P ++K+SSG+GKPRGRPRK  +P      +TT    A  GR RGRPPKVK   T
Sbjct: 121 PPK---PTKLKISSGSGKPRGRPRKMARPTGGLGASTTTMATATGGRGRGRPPKVKPTFT 180

[Close]

BLAST of ClCG05G011490 vs. NCBI nr
Match: gi|1181591|dbj|BAA11767.1| (high mobility group protein [Canavalia gladiata])

HSP 1 Score: 272.7 bits (696), Expect = 4.6e-70
Identity = 132/180 (73.33%), Postives = 148/180 (82.22%), Query Frame = 1


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATEEVNKPPSLPPY EMI +A+++LN  NGSNKS ISKYIEST G LP GHS+LL HHL
Sbjct: 1   MATEEVNKPPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPNSALSPPKPRGRPPKDPNA 120
           N MK SGELVF KNNYMK DPT+PP+RGRGRPPKPK PLPP + LSPP+PRGRPPKDPNA
Sbjct: 61  NKMKESGELVFLKNNYMKPDPTSPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPQPATTPAP-PAPSGRPRGRPPKVKAPLTEVSVQ 180
           P K P   + KVS+G+G+PRGRP+K  + A   AP P PSGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PTKSP---KAKVSTGSGRPRGRPKKIARSAAVVAPTPGPSGRPRGRPPKVKPQLTEVSVE 177

The following BLAST results are available for this feature:

BLAST of ClCG05G011490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGYA_SOYBN	2.6e-65	68.33	HMG-Y-related protein A OS=Glycine max PE=2 SV=1	[more]
HMGYB_SOYBN	4.3e-52	65.38	HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1	[more]
HMGYA_ARATH	3.1e-42	52.25	HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1	[more]
HMGYA_MAIZE	1.2e-41	53.19	HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1	[more]
H1_MAIZE	1.8e-13	30.67	Histone H1 OS=Zea mays PE=2 SV=2	[more]

BLAST of ClCG05G011490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCH9_CUCSA	1.4e-94	92.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1	[more]
Q42461_CANGL	7.6e-72	73.33	High mobility group protein OS=Canavalia gladiata PE=2 SV=1	[more]
Q42492_CANGL	3.2e-70	73.33	High mobility group protein OS=Canavalia gladiata PE=2 SV=1	[more]
M5XB09_PRUPE	4.6e-69	71.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1	[more]
A0A067KDV9_JATCU	1.1e-67	69.11	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13448 PE=3 SV=1	[more]

BLAST of ClCG05G011490 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	1.7e-43	52.25	high mobility group A	[more]
AT3G18035.1	8.7e-19	35.05	winged-helix DNA-binding transcription factor family protein	[more]
AT1G48620.1	2.1e-17	36.88	high mobility group A5	[more]
AT1G44191.1	5.1e-11	33.98	ECA1 gametogenesis related family protein	[more]
AT5G08780.1	6.2e-09	40.00	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of ClCG05G011490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114297\|ref\|XP_008456999.1\|	2.8e-96	94.44	PREDICTED: HMG-Y-related protein A-like [Cucumis melo]	[more]
gi\|449456239\|ref\|XP_004145857.1\|	2.0e-94	92.78	PREDICTED: HMG-Y-related protein A-like [Cucumis sativus]	[more]
gi\|1181589\|dbj\|BAA11766.1\|	1.1e-71	73.33	high mobility group protein [Canavalia gladiata]	[more]
gi\|1009126639\|ref\|XP_015880263.1\|	2.7e-70	72.58	PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba]	[more]
gi\|1181591\|dbj\|BAA11767.1\|	4.6e-70	73.33	high mobility group protein [Canavalia gladiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000116	HMGA
IPR005818	Histone_H1/H5_H15
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR017956	AT_hook_DNA-bd_motif

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000785	chromatin
GO:0000786	nucleosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006334	nucleosome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G011490.1	ClCG05G011490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 126..145 score: 4.2E-7coord: 84..96 score: 4.2E-7coord: 99..110 score: 4.
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 13..73 score: 2.
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 9..75 score: 2.5
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 11..80 score: 21
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 8..79 score: 9.5
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 8..87 score: 5.44
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 86..96 score: 1.6E-15coord: 158..168 score: 1.6E-15coord: 106..117 score: 1.6
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 108..120 score: 0.79coord: 137..149 score: 2.4coord: 160..172 score: 2.4coord: 86..98 score: 1
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 1..171 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G011490	Csa3G284020	Cucumber (Chinese Long) v2	cuwcgB226
ClCG05G011490	MELO3C020191	Melon (DHL92) v3.5.1	mewcgB434
ClCG05G011490	Cla013219	Watermelon (97103) v1	wcgwmB286
ClCG05G011490	Cla97C05G093550	Watermelon (97103) v2	wcgwmbB229
ClCG05G011490	Bhi01G001494	Wax gourd	wcgwgoB436
ClCG05G011490	CSPI03G20830	Wild cucumber (PI 183967)	cpiwcgB230
ClCG05G011490	CmaCh14G008230	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G011490	CmaCh01G003760	Cucurbita maxima (Rimu)	cmawcgB407
ClCG05G011490	CmoCh01G003930	Cucurbita moschata (Rifu)	cmowcgB406
ClCG05G011490	CmoCh14G008380	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G011490	Lsi05G003580	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G011490	Cp4.1LG02g16890	Cucurbita pepo (Zucchini)	cpewcgB518
ClCG05G011490	Cp4.1LG03g05980	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G011490	CsGy3G020430	Cucumber (Gy14) v2	cgybwcgB208
ClCG05G011490	MELO3C020191.2	Melon (DHL92) v3.6.1	medwcgB431
ClCG05G011490	Carg07460	Silver-seed gourd	carwcgB0739
ClCG05G011490	Carg22258	Silver-seed gourd	carwcgB0464
ClCG05G011490	CsaV3_3G020800	Cucumber (Chinese Long) v3	cucwcgB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G011490	Wax gourd	wcgwgoB441
ClCG05G011490	Cucumber (Chinese Long) v2	cuwcgB233
ClCG05G011490	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G011490	Cucumber (Gy14) v2	cgybwcgB217
ClCG05G011490	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G011490	Cucumber (Chinese Long) v3	cucwcgB241