CmoCh01G003930 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G003930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	High mobility group protein
Location	Cmo_Chr01 : 1942587 .. 1943937 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAGTTTTGCAGTCAATTTTGGTTCCTCTCTCTATTTCTACCAGCTGCTTTCTGTAGGCTTCAGGGAAATAAAAGCTTTGTTTTTCAATTTCAATGGCGACTGAAGAGCTGCCTCCTTACCCTCAGGTTCATTCATGATTTGTTCTTCATTTTGTTGTTTTTTCTCTCTTAATTCTTCGTGGGTTTCGTCCTACTACCTTTAATTTCTTGAATCTGCTTCTGGGTTTGTGCGTTTGCACCTTAATTTGTTCTTGAATCAGAGTTTCTCGTGATTCTTTTTGTTGTTGTTCTGTGATGATTTGATGAACAGGGGAAATTTCTACTTTCATTTTTGGATTTGATTTGAAATGATAAGAGATTTGATGTTAATTTTTTGAAGATTTGTAGATGTTAGATCTGTTCTTAAGTTTCTTTCTAGATCTACAAATCATGGAAGGAAAAAGGATGAATCAAAACACCATTTGTGATGGAAATGTTTTGAATATTGCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGACAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCAACATATGAGAACTTACCAACTGGGCACTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGCGGAGAGCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCCCGGCGGGGGCGTGGCAGGCCTCCCAAGCCGAAGGAGCAGAGGGAGCCTCCCATTGCAGCAAAGGCAGTGAAGATGAAGGTATCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGTCAGTGACCACAACAGCTCTGCCACCACCGAGCGGGAGGCCCAGAGGTCGACCGCCTAAGGTGAAGGCTCTGTTGACTGAAGTTAGCGTTCTATAATAGATAGATTGTTGCAGTGTGCAGTGAAGTGTTAATTGGTAGTGCCATGACTCGCGCTCTCTCTGTTGCTGTGTGAGCTGTTGTAGTTGTAATTGTTGTAAAATGTGGTGGTGTGGTTTGTGTGAGGGCTCACGTTCACCTGTGCTAGTCATCCTTTCTTTAGTGTTTCAAACCTTAAAAGTTCAAACACGACACATCCACCGGTAGATATTGTCTGTTTTAGCTTGATATGTATAGCCGTCTCATGGTTTTAAAAACGCGTATGATAGGGAGAGGTTTCAGTACTATTACAAGGAATGTTTCGTACCCCTTTCTAACTCATTTGAGATCTCATAATCCACCTTTTTGGAGGACTAGAGTCCCTGTTGACACATTGTTCAGTGCTTGACTCTAACACCATTTGTAACCGTCCAAACTTGTCATTAGCGGA

mRNA sequence

AAACAGTTTTGCAGTCAATTTTGGTTCCTCTCTCTATTTCTACCAGCTGCTTTCTGTAGGCTTCAGGGAAATAAAAGCTTTGTTTTTCAATTTCAATGGCGACTGAAGAGCTGCCTCCTTACCCTCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGACAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCAACATATGAGAACTTACCAACTGGGCACTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGCGGAGAGCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCCCGGCGGGGGCGTGGCAGGCCTCCCAAGCCGAAGGAGCAGAGGGAGCCTCCCATTGCAGCAAAGGCAGTGAAGATGAAGGTATCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGTCAGTGACCACAACAGCTCTGCCACCACCGAGCGGGAGGCCCAGAGGTCGACCGCCTAAGGTGAAGGCTCTGTTGACTGAAGTTAGCGTTCTATAATAGATAGATTGTTGCAGTGTGCAGTGAAGTGTTAATTGGTAGTGCCATGACTCGCGCTCTCTCTGTTGCTGTGTGAGCTGTTGTAGTTGTAATTGTTGTAAAATGTGGTGGTGTGGTTTGTGTGAGGGCTCACGTTCACCTGTGCTAGTCATCCTTTCTTTAGTGTTTCAAACCTTAAAAGTTCAAACACGACACATCCACCGGTAGATATTGTCTGTTTTAGCTTGATATGTATAGCCGTCTCATGGTTTTAAAAACGCGTATGATAGGGAGAGGTTTCAGTACTATTACAAGGAATGTTTCGTACCCCTTTCTAACTCATTTGAGATCTCATAATCCACCTTTTTGGAGGACTAGAGTCCCTGTTGACACATTGTTCAGTGCTTGACTCTAACACCATTTGTAACCGTCCAAACTTGTCATTAGCGGA

Coding sequence (CDS)

ATGGCGACTGAAGAGCTGCCTCCTTACCCTCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGACAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCAACATATGAGAACTTACCAACTGGGCACTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGCGGAGAGCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCCCGGCGGGGGCGTGGCAGGCCTCCCAAGCCGAAGGAGCAGAGGGAGCCTCCCATTGCAGCAAAGGCAGTGAAGATGAAGGTATCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGTCAGTGACCACAACAGCTCTGCCACCACCGAGCGGGAGGCCCAGAGGTCGACCGCCTAAGGTGAAGGCTCTGTTGACTGAAGTTAGCGTTCTATAA

Homology

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BLAST of CmoCh01G003930 vs. Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-38
Identity = 95/176 (53.98%), Postives = 115/176 (65.34%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MI++ +EALN  NGSNKS ISKYIE+TY  LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPD--ATVLGSHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQ-----------------REPPI 120
           N MK SGEL F +NNYMK DP+A P+RGRGRPPKPK                   ++P  
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQSVTTTA-LPPPSGRPRGRPPKVKALLTEVSV 153
             K+ K K + G+G+PRGRP+K+P+S    A     SGRPRGRPPKVK  LTEVSV
Sbjct: 121 PPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSV 174

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BLAST of CmoCh01G003930 vs. Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.2e-32
Identity = 78/141 (55.32%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 6   LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
           LPPYPQMI+ AIE+LN  NG NK+TI+K+IEST + LP  H +LL+ HLN MK +G+L+ 
Sbjct: 23  LPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIM 82

Query: 66  WKNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRGRPR----KLP 125
            KNNYMK DP A P+RGRGRPPK K Q E   AA AV       T  PR R R    K P
Sbjct: 83  VKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKDP 142

Query: 126 QSVTTTALPPPSGRPRGRPPK 143
                  +   SGRPRGRPPK
Sbjct: 143 SEPPQEKVITGSGRPRGRPPK 163

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BLAST of CmoCh01G003930 vs. Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 81/155 (52.26%), Postives = 98/155 (63.23%), Query Frame = 1


Query: 19  ALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFWKNNYMKRDPSAA 78
           ALN  +GSNKS ISKYIE+TY  LP    ++L  HLN MK SGEL F +NNYMK DP+A 
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 79  PRRGRGRPPKPK-----------------EQREPPIAAKAVKMKVSSGTGKPRGRPRKLP 138
           P+RGRGRPPKPK                   ++P    K+ K K +  TG+PRGRP+K+ 
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPKAKATPATGRPRGRPKKVA 120

Query: 139 QSVTTTALPPP----SGRPRGRPPKVKALLTEVSV 153
           +S    A+P P    +GRPRGRPPKVK  LTEVSV
Sbjct: 121 RS---PAVPSPTAVSTGRPRGRPPKVKPQLTEVSV 150

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BLAST of CmoCh01G003930 vs. Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-28
Identity = 78/151 (51.66%), Postives = 94/151 (62.25%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      +PPYP+MIL AIE L+  +GSNKS ISKYIE  Y +LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGELVFWKNNYMKRD-PSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKP 120
             MK SGELVF KNNY +   P A P+RGRGRPPK ++   P  A K+      S TG+ 
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKS-----PSSTGRG 120

Query: 121 RGRPRKLPQSVTTTALPPPSG--RPRGRPPK 143
           RGRP K    +        +G  +PRGRPPK
Sbjct: 121 RGRPPKAKSPLEAAVKQATAGMPKPRGRPPK 146

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BLAST of CmoCh01G003930 vs. Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.0e-07
Identity = 48/157 (30.57%), Postives = 76/157 (48.41%), Query Frame = 1


Query: 3   TEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGE 62
           T   P + +MI  AI  L    GS++  I+K++E  ++ LP+    LL  HL  + ASG+
Sbjct: 48  TSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGK 107

Query: 63  LVFWKNNYMKRDPSAAPRRGRGRPPK-PKEQREPPIAAKAVKMKVSSGTGKPRGRPR--- 122
           LV  KN++      AAP     + P  PK    P +AAK    K+ +   KP+ + +   
Sbjct: 108 LVKVKNSFKLPSARAAPAPALAKKPTIPK----PKVAAKPKTAKIGA---KPKAKAKVAA 167

Query: 123 KLPQSVTTTALPPPSGRPR----GRPPKVKALLTEVS 152
           K   +  T A   P+ +P+    G+P  V A   +V+
Sbjct: 168 KTKATTKTVAKKIPAAKPKAKTAGKPKTVAAKPAKVA 197

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BLAST of CmoCh01G003930 vs. TrEMBL
Match: A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-58
Identity = 128/178 (71.91%), Postives = 135/178 (75.84%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNSDNGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPK--------------------PKEQRE 120
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK                    PK+   
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPIAAKAVKMKVSSGTGKPRGRPRKLPQSVTTTALPPPSGRPRGRPPKVKALLTEVSV 153
           PP   K V+MKVSSGTGKPRGRPRK PQS +T A P PSGRPRGRPPKVKA LTEVSV
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSV 178

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BLAST of CmoCh01G003930 vs. TrEMBL
Match: Q42461_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.3e-43
Identity = 102/176 (57.95%), Postives = 122/176 (69.32%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+M+++A++ALN  +GSNKS ISKYIESTY  LP GH++LL  HL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPK-----------------EQREPPI 120
           N MK SGELVF KNNYMK DP+A P+RGRGRPPKPK                   ++P  
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQSVTTTA-LPPPSGRPRGRPPKVKALLTEVSV 153
             K+ K KVS+G+G+PRGRP+K+ +S    A  P PSGRPRGRPPKVK  LTEVSV
Sbjct: 121 PPKSPKTKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEVSV 176

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BLAST of CmoCh01G003930 vs. TrEMBL
Match: M5XB09_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.3e-43
Identity = 107/181 (59.12%), Postives = 124/181 (68.51%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MIL+AIEALN  NGSNKS+ISK+IESTY +LP GH+SLL+ HL
Sbjct: 1   MATEEVNKPLSLPPYPEMILKAIEALNEKNGSNKSSISKFIESTYGDLPAGHNSLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQ-----------------REPPI 120
           N MK SGELVFWKNNY K DP+A PRRGRGRPPKPK+                  ++P  
Sbjct: 61  NKMKDSGELVFWKNNYTKPDPNAPPRRGRGRPPKPKDSLPPDAVLGPTRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQ-----SVTTTALPPPSGRPRGRPPKVK-ALLTEVS 153
             K  K+KVSSG+GKPRGRPRK+ +     S + T      GRPRGRPPKVK +L  EVS
Sbjct: 121 PPKPPKVKVSSGSGKPRGRPRKMAKPTGGLSGSATVTDTMPGRPRGRPPKVKDSLSAEVS 180

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BLAST of CmoCh01G003930 vs. TrEMBL
Match: Q42492_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-41
Identity = 101/176 (57.39%), Postives = 119/176 (67.61%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPY +MI +A+++LN  NGSNKS ISKYIEST   LP GHS+LL  HL
Sbjct: 1   MATEEVNKPPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPK-----------------EQREPPI 120
           N MK SGELVF KNNYMK DP++ P+RGRGRPPKPK                   ++P  
Sbjct: 61  NKMKESGELVFLKNNYMKPDPTSPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQSVTTTA-LPPPSGRPRGRPPKVKALLTEVSV 153
             K+ K KVS+G+G+PRGRP+K+ +S    A  P PSGRPRGRPPKVK  LTEVSV
Sbjct: 121 PTKSPKAKVSTGSGRPRGRPKKIARSAAVVAPTPGPSGRPRGRPPKVKPQLTEVSV 176

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BLAST of CmoCh01G003930 vs. TrEMBL
Match: V4SSW7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012880mg PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.7e-41
Identity = 101/182 (55.49%), Postives = 120/182 (65.93%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MA EE      LPPYPQMI  AIEALN  NGSNK++ISKYIES Y +LP GH++LL+ HL
Sbjct: 1   MAAEEINKLPTLPPYPQMISSAIEALNESNGSNKTSISKYIESKYGHLPAGHTTLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPK-----------------EQREPPI 120
           N MK +GELVFWKNNYMK DP+A PRRGRGRPPK K                   ++P  
Sbjct: 61  NRMKETGELVFWKNNYMKHDPNAPPRRGRGRPPKTKVPMPGGSDSSPARPRGRPPKDPSA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQ-------SVTTTALPPPSGRPRGRPPKVKALLTEV 153
           + K VK KV++G+GKPRGRPRK+ +       + TTTA    +GR RGRPPKVK    E+
Sbjct: 121 SPKPVKPKVATGSGKPRGRPRKMARPSGGISGTATTTATVTGTGRGRGRPPKVKPQFNEM 180

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BLAST of CmoCh01G003930 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A)

HSP 1 Score: 138.3 bits (347), Expect = 4.0e-33
Identity = 78/141 (55.32%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 6   LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
           LPPYPQMI+ AIE+LN  NG NK+TI+K+IEST + LP  H +LL+ HLN MK +G+L+ 
Sbjct: 23  LPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIM 82

Query: 66  WKNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRGRPR----KLP 125
            KNNYMK DP A P+RGRGRPPK K Q E   AA AV       T  PR R R    K P
Sbjct: 83  VKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKDP 142

Query: 126 QSVTTTALPPPSGRPRGRPPK 143
                  +   SGRPRGRPPK
Sbjct: 143 SEPPQEKVITGSGRPRGRPPK 163

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BLAST of CmoCh01G003930 vs. TAIR10
Match: AT1G48620.1 (AT1G48620.1 high mobility group A5)

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-13
Identity = 51/138 (36.96%), Postives = 64/138 (46.38%), Query Frame = 1


Query: 7   PPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFW 66
           PPY  MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLT HL  +K SG LV  
Sbjct: 76  PPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMV 135

Query: 67  KNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRGRPRKLPQSVTT 126
           K +Y         +     PP P     P +        V+          + LP  V  
Sbjct: 136 KKSY---------KLASTPPPPPPTSVAPSLEPPRSDFIVNEN--------QPLPDPVLA 195

Query: 127 TALPPPSGRPRGRPPKVK 145
           ++ P    R RGRPPK K
Sbjct: 196 SSTPQTIKRGRGRPPKAK 196

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BLAST of CmoCh01G003930 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-10
Identity = 47/140 (33.57%), Postives = 62/140 (44.29%), Query Frame = 1


Query: 7   PPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFW 66
           PPY +MI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLT HL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 67  KNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRGRPRKLPQS--V 126
           K +Y                 K      PP +        + G   PR        +  +
Sbjct: 126 KKSY-----------------KIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPM 185

Query: 127 TTTALPPPSGRPRGRPPKVK 145
            + +   P  R RGRPPK K
Sbjct: 186 ASGSASQPLKRGRGRPPKPK 188

[Close]

BLAST of CmoCh01G003930 vs. TAIR10
Match: AT5G08780.1 (AT5G08780.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-07
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 1


Query: 3   TEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGE 62
           T + P Y  MI  AI  LN + G+++  IS++I+S Y+NLP  H++LL+ HL  +    E
Sbjct: 52  TPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKRE 111

Query: 63  LVFWKNN 70
           ++   NN
Sbjct: 112 ILCDCNN 118

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BLAST of CmoCh01G003930 vs. NCBI nr
Match: gi|659114297|ref|XP_008456999.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 6.9e-59
Identity = 129/178 (72.47%), Postives = 135/178 (75.84%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNSDNGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPK--------------------PKEQRE 120
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK                    PK+   
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPIAAKAVKMKVSSGTGKPRGRPRKLPQSVTTTALPPPSGRPRGRPPKVKALLTEVSV 153
           PP   K V+MKVSSGTGKPRGRPRK PQS TT A P PSGRPRGRPPKVKA LTEVSV
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]

BLAST of CmoCh01G003930 vs. NCBI nr
Match: gi|449456239|ref|XP_004145857.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 2.0e-58
Identity = 128/178 (71.91%), Postives = 135/178 (75.84%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNSDNGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPK--------------------PKEQRE 120
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK                    PK+   
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPIAAKAVKMKVSSGTGKPRGRPRKLPQSVTTTALPPPSGRPRGRPPKVKALLTEVSV 153
           PP   K V+MKVSSGTGKPRGRPRK PQS +T A P PSGRPRGRPPKVKA LTEVSV
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]

BLAST of CmoCh01G003930 vs. NCBI nr
Match: gi|1009126639|ref|XP_015880263.1| (PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba])

HSP 1 Score: 189.1 bits (479), Expect = 5.7e-45
Identity = 104/172 (60.47%), Postives = 117/172 (68.02%), Query Frame = 1


Query: 4   EELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGEL 63
           + LPPYP+MI+RAIEALN  NGSNKSTISKYIESTY  LP GHS LL+ HLN MK SGEL
Sbjct: 10  QSLPPYPEMIIRAIEALNDKNGSNKSTISKYIESTYGELPAGHSQLLSHHLNRMKESGEL 69

Query: 64  VFWKNNYMKRDPSAAPRRGRGRPPKPKEQ-----------------REPPIAAKAVKMKV 123
           VFWKNNY K DP+A PRRGRGRPPKPKE                  ++P    K  K+K+
Sbjct: 70  VFWKNNYTKADPNAPPRRGRGRPPKPKEPLPPGASLGPMRPRGRPPKDPDAPPKPTKLKI 129

Query: 124 SSGTGKPRGRPRKLPQ------SVTTTALPPPSGRPRGRPPKVKALLTEVSV 153
           SSG+GKPRGRPRK+ +      + TTT      GR RGRPPKVK   TEVSV
Sbjct: 130 SSGSGKPRGRPRKMARPTGGLGASTTTMATATGGRGRGRPPKVKPTFTEVSV 181

[Close]

BLAST of CmoCh01G003930 vs. NCBI nr
Match: gi|1181589|dbj|BAA11766.1| (high mobility group protein [Canavalia gladiata])

HSP 1 Score: 181.8 bits (460), Expect = 9.0e-43
Identity = 102/176 (57.95%), Postives = 122/176 (69.32%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+M+++A++ALN  +GSNKS ISKYIESTY  LP GH++LL  HL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPK-----------------EQREPPI 120
           N MK SGELVF KNNYMK DP+A P+RGRGRPPKPK                   ++P  
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQSVTTTA-LPPPSGRPRGRPPKVKALLTEVSV 153
             K+ K KVS+G+G+PRGRP+K+ +S    A  P PSGRPRGRPPKVK  LTEVSV
Sbjct: 121 PPKSPKTKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEVSV 176

[Close]

BLAST of CmoCh01G003930 vs. NCBI nr
Match: gi|595926770|ref|XP_007215046.1| (hypothetical protein PRUPE_ppa012096mg [Prunus persica])

HSP 1 Score: 181.8 bits (460), Expect = 9.0e-43
Identity = 107/181 (59.12%), Postives = 124/181 (68.51%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MIL+AIEALN  NGSNKS+ISK+IESTY +LP GH+SLL+ HL
Sbjct: 1   MATEEVNKPLSLPPYPEMILKAIEALNEKNGSNKSSISKFIESTYGDLPAGHNSLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQ-----------------REPPI 120
           N MK SGELVFWKNNY K DP+A PRRGRGRPPKPK+                  ++P  
Sbjct: 61  NKMKDSGELVFWKNNYTKPDPNAPPRRGRGRPPKPKDSLPPDAVLGPTRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQ-----SVTTTALPPPSGRPRGRPPKVK-ALLTEVS 153
             K  K+KVSSG+GKPRGRPRK+ +     S + T      GRPRGRPPKVK +L  EVS
Sbjct: 121 PPKPPKVKVSSGSGKPRGRPRKMAKPTGGLSGSATVTDTMPGRPRGRPPKVKDSLSAEVS 180

The following BLAST results are available for this feature:

BLAST of CmoCh01G003930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGYA_SOYBN	3.0e-38	53.98	HMG-Y-related protein A OS=Glycine max PE=2 SV=1	[more]
HMGYA_ARATH	7.2e-32	55.32	HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1	[more]
HMGYB_SOYBN	1.5e-29	52.26	HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1	[more]
HMGYA_MAIZE	1.3e-28	51.66	HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1	[more]
H1_EUPES	8.0e-07	30.57	Histone H1 OS=Euphorbia esula PE=2 SV=1	[more]

BLAST of CmoCh01G003930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCH9_CUCSA	1.4e-58	71.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1	[more]
Q42461_CANGL	6.3e-43	57.95	High mobility group protein OS=Canavalia gladiata PE=2 SV=1	[more]
M5XB09_PRUPE	6.3e-43	59.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1	[more]
Q42492_CANGL	2.0e-41	57.39	High mobility group protein OS=Canavalia gladiata PE=2 SV=1	[more]
V4SSW7_9ROSI	7.7e-41	55.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012880mg PE=3 SV=1	[more]

BLAST of CmoCh01G003930 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	4.0e-33	55.32	high mobility group A	[more]
AT1G48620.1	2.1e-13	36.96	high mobility group A5	[more]
AT3G18035.1	3.7e-10	33.57	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	8.5e-07	38.81	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of CmoCh01G003930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114297\|ref\|XP_008456999.1\|	6.9e-59	72.47	PREDICTED: HMG-Y-related protein A-like [Cucumis melo]	[more]
gi\|449456239\|ref\|XP_004145857.1\|	2.0e-58	71.91	PREDICTED: HMG-Y-related protein A-like [Cucumis sativus]	[more]
gi\|1009126639\|ref\|XP_015880263.1\|	5.7e-45	60.47	PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba]	[more]
gi\|1181589\|dbj\|BAA11766.1\|	9.0e-43	57.95	high mobility group protein [Canavalia gladiata]	[more]
gi\|595926770\|ref\|XP_007215046.1\|	9.0e-43	59.12	hypothetical protein PRUPE_ppa012096mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000116	HMGA
IPR005818	Histone_H1/H5_H15
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR017956	AT_hook_DNA-bd_motif

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000785	chromatin
GO:0000786	nucleosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006334	nucleosome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003930.1	CmoCh01G003930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 109..120 score: 4.3E-6coord: 123..142 score: 4.3E-6coord: 78..90 score: 4.
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 7..67 score: 7.3
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 3..69 score: 2.5
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 5..74 score: 20
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 3..80 score: 2.0
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 3..81 score: 4.79
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 132..142 score: 2.1E-12coord: 109..120 score: 2.1E-12coord: 80..90 score: 2.1
IPR017956	AT hook, DNA-binding motif	PFAM	PF02178	AT_hook	coord: 81..88 score: 4.5coord: 134..144 score: 0.064coord: 111..119 score:
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 80..92 score: 19.0coord: 111..123 score: 5.2coord: 134..146 score:
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 6..150 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G003930	Cucsa.031270	Cucumber (Gy14) v1	cgycmoB0010
CmoCh01G003930	CmaCh01G003760	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G003930	CmaCh14G008230	Cucurbita maxima (Rimu)	cmacmoB257
CmoCh01G003930	Cla013219	Watermelon (97103) v1	cmowmB427
CmoCh01G003930	ClCG05G011490	Watermelon (Charleston Gray)	cmowcgB406
CmoCh01G003930	Lsi05G003580	Bottle gourd (USVL1VR-Ls)	cmolsiB430
CmoCh01G003930	Cp4.1LG03g05980	Cucurbita pepo (Zucchini)	cmocpeB453
CmoCh01G003930	Cp4.1LG02g16890	Cucurbita pepo (Zucchini)	cmocpeB449
CmoCh01G003930	Cla97C05G093550	Watermelon (97103) v2	cmowmbB454
CmoCh01G003930	Bhi01G001494	Wax gourd	cmowgoB0559
CmoCh01G003930	Carg22258	Silver-seed gourd	carcmoB0651
CmoCh01G003930	Carg07460	Silver-seed gourd	carcmoB1033

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G003930	CmoCh14G008380	Cucurbita moschata (Rifu)	cmocmoB203

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G003930	Cucumber (Gy14) v2	cgybcmoB339
CmoCh01G003930	Melon (DHL92) v3.6.1	cmomedB483
CmoCh01G003930	Cucumber (Chinese Long) v3	cmocucB0532
CmoCh01G003930	Wild cucumber (PI 183967)	cmocpiB446
CmoCh01G003930	Cucumber (Chinese Long) v2	cmocuB442
CmoCh01G003930	Melon (DHL92) v3.5.1	cmomeB421