Carg22258 (gene) Silver-seed gourd

Overview
NameCarg22258
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHMG-Y-related protein A-like
LocationCucurbita_argyrosperma_scaffold_164 : 30837 .. 32233 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGTTTCGTTCGAACAGCAGTAGTAGGTTCCTCTCTCTCTATCTCTAGCTGCTTTCGGAGTGACTCTTCACCTTCTTTCTCTGTTGGCTTCACGGAAATTAAAGCTTCTGTTTCAATCTTCAATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCGTTTTCCTCTCTATTTCCCGCAATTTCTGATATCCATCAACCAAAAATGATGATATGTTCTGTTTTTTCTCTCTTAATTTTTTGCTCCTCTTCGTCTCACTACCTCTAATTTGTTGAATCTATTATGGATTTGTGTGTTAATCTGTTCTTGAATTAGGGTTTCTTCTGATTTTGTGTCTTGTTTACTGAATTTTGTTGTTCTCTGGTGATTTGGTTAACAGGAGAAAATCCTTGTTTCCTTGTGTTTTCTTGCATTTTCTTCTCTAATCTGAGCGTTTGTTTTTCGGAAAAAACATGAAACGTTGATTATTCATCGGAGATTTTTCATTTCTTTAGCTCTTGTTAGAGATGACATGAATGTGCTTCTGGTTGACTGCAGTTTCTTCGATGATTTGTTTCTCATCTTATTTTGAATGATTCTTCAGTTCCATCATCCTTAATGAAATGGTTTTGAGGTTTGAATTTTGTTTGAGTCAGAAGAGATTTGAGATTAATGCCATTAACTGAATTTGCTGGAAACAAGTTCATTTGAAATGTGCTTCGATTTGAATTCTCTTGAAATGCTGAGAAAGAAGAATCCTGATTGATTTGGCTATCAAGTTTCAATTTAGATCTGCGAATCATTGAAGCTGATAAGAGTGGATCATGAAAATGAAAGGAAAAGGTTGAATTGAAACACCATTTTTGAACGAGGGGCGTTTTAAATGTTGCAGATGATATTTAGGGCTATTGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCGAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCACCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACAGAAGTTAGCGTTCAACAATAG

mRNA sequence

AAAAGTTTCGTTCGAACAGCAGTAGTAGGTTCCTCTCTCTCTATCTCTAGCTGCTTTCGGAGTGACTCTTCACCTTCTTTCTCTGTTGGCTTCACGGAAATTAAAGCTTCTGTTTCAATCTTCAATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCGAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCACCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACAGAAGTTAGCGTTCAACAATAG

Coding sequence (CDS)

ATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCGAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCACCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACAGAAGTTAGCGTTCAACAATAG

Protein sequence

MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVSVQQ
Homology
[Close]
BLAST of Carg22258 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.8 bits (647), Expect = 4.3e-64
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRXXXXXXX 120
           NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRXXXXXXX
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRXXXXXXX 120

Query: 121 XXXXXXXXXXXQMKVSSGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGPLTEVS 180
           XXXXXXXXXXXQMKVSSGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGPLTEVS
Sbjct: 121 XXXXXXXXXXXQMKVSSGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKGPLTEVS 180

Query: 181 VQQ 184
           VQQ
Sbjct: 181 VQQ 183

[Close]
BLAST of Carg22258 vs. NCBI nr
Match: XP_004145857.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus] >KGN57766.1 hypothetical protein Csa_3G284020 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 1.8e-49
Identity = 100/109 (91.74%), Postives = 103/109 (94.50%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPK 110
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PK
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPK 109

[Close]
BLAST of Carg22258 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 2.3e-49
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPP 109
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  S +SPP
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 108

[Close]
BLAST of Carg22258 vs. NCBI nr
Match: XP_022143283.1 (HMG-Y-related protein A-like [Momordica charantia])

HSP 1 Score: 200.7 bits (509), Expect = 4.4e-48
Identity = 99/108 (91.67%), Postives = 99/108 (91.67%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATGGVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPP 109
           NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPK KVPLP     SPP
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPSNVASSPP 108

[Close]
BLAST of Carg22258 vs. NCBI nr
Match: PON55570.1 (High mobility group protein HMGA [Parasponia andersonii] >PON89055.1 High mobility group protein HMGA [Trema orientalis])

HSP 1 Score: 185.7 bits (470), Expect = 1.5e-43
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEMI RAIEALN +NGSNKS+ISKYIESTYG+LP GHS+LL+HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVL 106
           N MK SGELVFWKNNY K DP APPRRGRGRPPK KVPLPPG+VL
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPKVPLPPGAVL 105

[Close]
BLAST of Carg22258 vs. TAIR10
Match: AT1G14900.1 (high mobility group A)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-21
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 11 SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
          SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22 SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71 FWKNNYMKRDPTAP 85
            KNNYMK DP AP
Sbjct: 82 MVKNNYMKPDPDAP 95

[Close]
BLAST of Carg22258 vs. TAIR10
Match: AT1G48620.1 (high mobility group A5)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-13
Identity = 51/140 (36.43%), Postives = 62/140 (44.29%), Query Frame = 0 

Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           S PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL  +K SG LV
Sbjct: 74  SHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILV 133

Query: 71  FWKNNYM---------------------------KRDPTAPP----------RRGRGRPP 114
             K +Y                            +  P   P          +RGRGRPP
Sbjct: 134 MVKKSYKXXXXXXXXXXXXVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPP 193

[Close]
BLAST of Carg22258 vs. TAIR10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-13
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0 

Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNYMKRDPTAPP 86
           K +Y     + PP
Sbjct: 126 KKSYKIAGSSTPP 138

[Close]
BLAST of Carg22258 vs. TAIR10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-08
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 6   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKA 65
           +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGELVFWKNN 76
             E++   NN
Sbjct: 109 KREILCDCNN 118

[Close]
BLAST of Carg22258 vs. Swiss-Prot
Match: sp|Q00423|HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 74/105 (70.48%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVL 106
           N MK SGEL F +NNYMK DP APP+RGRGRPPK K PLPPG+V+
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVV 103

[Close]
BLAST of Carg22258 vs. Swiss-Prot
Match: sp|Q9FYS5|HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 56/89 (62.92%), Postives = 64/89 (71.91%), Query Frame = 0 

Query: 1  MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
          MA +E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1  MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61 NMMKASGELVFWKNNYMKRD-PTAPPRRG 89
            MK SGELVF KNNY +   P APP+RG
Sbjct: 61 ARMKESGELVFLKNNYFRAGAPDAPPKRG 89

[Close]
BLAST of Carg22258 vs. Swiss-Prot
Match: sp|Q10370|HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-22
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 0 

Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SGEL F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKLKVPLPPGS 104
           P+RGRGRPPK KVPLPPG+
Sbjct: 61  PKRGRGRPPKPKVPLPPGT 77

[Close]
BLAST of Carg22258 vs. Swiss-Prot
Match: sp|Q43386|HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.5e-20
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 11 SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
          SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22 SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71 FWKNNYMKRDPTAP 85
            KNNYMK DP AP
Sbjct: 82 MVKNNYMKPDPDAP 95

[Close]
BLAST of Carg22258 vs. TrEMBL
Match: tr|A0A0A0LCH9|A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 100/109 (91.74%), Postives = 103/109 (94.50%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPK 110
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PK
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPK 109

[Close]
BLAST of Carg22258 vs. TrEMBL
Match: tr|A0A1S3C432|A0A1S3C432_CUCME (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-49
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPP 109
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  S +SPP
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 108

[Close]
BLAST of Carg22258 vs. TrEMBL
Match: tr|A0A2P5EU67|A0A2P5EU67_9ROSA (High mobility group protein HMGA OS=Trema orientalis OX=63057 GN=TorRG33x02_151300 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.6e-44
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEMI RAIEALN +NGSNKS+ISKYIESTYG+LP GHS+LL+HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVL 106
           N MK SGELVFWKNNY K DP APPRRGRGRPPK KVPLPPG+VL
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPKVPLPPGAVL 105

[Close]
BLAST of Carg22258 vs. TrEMBL
Match: tr|A0A2P5C3B6|A0A2P5C3B6_PARAD (High mobility group protein HMGA OS=Parasponia andersonii OX=3476 GN=PanWU01x14_187500 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.6e-44
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEMI RAIEALN +NGSNKS+ISKYIESTYG+LP GHS+LL+HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVL 106
           N MK SGELVFWKNNY K DP APPRRGRGRPPK KVPLPPG+VL
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPKVPLPPGAVL 105

[Close]
BLAST of Carg22258 vs. TrEMBL
Match: tr|A0A0B0PVF4|A0A0B0PVF4_GOSAR (HMG-Y-related A OS=Gossypium arboreum OX=29729 GN=F383_33941 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 89/113 (78.76%), Postives = 97/113 (85.84%), Query Frame = 0 

Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVN PPSLP YP++I  AIEALN  NGSNK++ISKYIES YG+LP GHSSLL+HHL
Sbjct: 1   MATEEVNNPPSLPSYPQLIINAIEALNDKNGSNKTSISKYIESKYGDLPAGHSSLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGR 114
           N+MK SGELVFWKNNYMK DP APPRRGRGRPPK KVPLPPG VLS  +PRGR
Sbjct: 61  NIMKESGELVFWKNNYMKADPNAPPRRGRGRPPKPKVPLPPGMVLSSARPRGR 113

The following BLAST results are available for this feature:
BLAST of Carg22258 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935331.14.3e-64100.00HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ... [more]
XP_004145857.11.8e-4991.74PREDICTED: HMG-Y-related protein A-like [Cucumis sativus] >KGN57766.1 hypothetic... [more]
XP_008456999.12.3e-4991.67PREDICTED: HMG-Y-related protein A-like [Cucumis melo][more]
XP_022143283.14.4e-4891.67HMG-Y-related protein A-like [Momordica charantia][more]
PON55570.11.5e-4384.76High mobility group protein HMGA [Parasponia andersonii] >PON89055.1 High mobili... [more]
BLAST of Carg22258 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14900.12.5e-2162.16high mobility group A[more]
AT1G48620.15.6e-1336.43high mobility group A5[more]
AT3G18035.17.2e-1349.32winged-helix DNA-binding transcription factor family protein[more]
AT5G08780.11.4e-0840.00winged-helix DNA-binding transcription factor family protein[more]
BLAST of Carg22258 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q00423|HMGYA_SOYBN1.4e-3470.48HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1[more]
sp|Q9FYS5|HMGYA_MAIZE1.1e-2362.92HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1[more]
sp|Q10370|HMGYB_SOYBN1.3e-2269.62HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1[more]
sp|Q43386|HMGYA_ARATH4.5e-2062.16HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1[more]
BLAST of Carg22258 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCH9|A0A0A0LCH9_CUCSA1.2e-4991.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1[more]
tr|A0A1S3C432|A0A1S3C432_CUCME1.5e-4991.67HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1[more]
tr|A0A2P5EU67|A0A2P5EU67_9ROSA9.6e-4484.76High mobility group protein HMGA OS=Trema orientalis OX=63057 GN=TorRG33x02_1513... [more]
tr|A0A2P5C3B6|A0A2P5C3B6_PARAD9.6e-4484.76High mobility group protein HMGA OS=Parasponia andersonii OX=3476 GN=PanWU01x14_... [more]
tr|A0A0B0PVF4|A0A0B0PVF4_GOSAR1.6e-4378.76HMG-Y-related A OS=Gossypium arboreum OX=29729 GN=F383_33941 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0000785chromatin
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR031059HMGA_plant
IPR036388WH-like_DNA-bd_sf
IPR005818Histone_H1/H5_H15
IPR000116HMGA
IPR017956AT_hook_DNA-bd_motif
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0000785 chromatin
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22258-RACarg22258-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 161..171
score: 68.56
coord: 106..117
score: 61.46
coord: 86..96
score: 68.18
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 163..175
e-value: 3.5
score: 12.2
coord: 86..98
e-value: 13.0
score: 8.9
coord: 140..152
e-value: 10.0
score: 9.6
coord: 108..120
e-value: 0.79
score: 15.8
IPR000116High mobility group protein HMGAPRINTSPR00930HIGHMOBLTYIYcoord: 152..171
score: 42.86
coord: 138..149
score: 33.33
coord: 106..118
score: 43.96
IPR005818Linker histone H1/H5, domain H15SMARTSM00526h15plus2coord: 9..75
e-value: 2.5E-22
score: 90.2
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 13..73
e-value: 1.7E-9
score: 37.8
IPR005818Linker histone H1/H5, domain H15PROSITEPS51504H15coord: 11..80
score: 21.778
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3DG3DSA:1.10.10.10coord: 6..80
e-value: 1.6E-10
score: 43.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..168
NoneNo IPR availablePANTHERPTHR11467HISTONE H1/H5coord: 4..182
IPR031059High mobility group protein HMGA, plantPANTHERPTHR11467:SF49SUBFAMILY NOT NAMEDcoord: 4..182
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 8..87