CsGy3G020430 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G020430
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	HMG-Y-related protein A-like
Location	Chr3 : 17186526 .. 17189276 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATACAAACCGTCAGATCATCATCCACTAGAAGATTCCAGCTGTTCACGATTCACATCAAAATTGCAAAAAGAAAAAGGAAACGAAAAAGAAAAAGAAAAAAGAAAATTAAATTAAAAAAAAAAAAAGAAAAAAAGAAAGGGGAAGAACAGAAATTACTCAAAATCCCCTGTTTGCAAATCTGTGCTCAAATCAAACAGTTAACAGAGCATTTTTTTTTTTTGAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCCGGGTTACTCTTCCCCTTCTCTGTAGGCTTCAGGATAATAAAAAACCTTTCTTTTTTCAATTTTCAATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCCTTTCCTCTTTCTCTCTTCCAGTTTCAGATACCCATCTACCAAAAACAATCATCTGTCCTTTTCTTTTCCTCTTAATTTTTTTTACCTCTAATTTGTTGAATCTATTATGGGTTTATGTGTTATGTCTTAATTTGTTCTTCAATTAGGGTTTCTTGTGATTTGTTTCTGATTTTTGTATCTTGTTTACTGAACTTCTTTTTTTTTTTTTTTTTTTGATTTTTTTCTTCTTGTTATGTTGTAATTTGGTGAACAGGGGAGAGTCCTTTTTTTTTTTTTTTTTTCTTTCTTCTTTGTGTTTTCTTTCATTTCCTTCTCGAATCTGAGTATTCTTTTTGGAAAAAATATTGGAATGGTTTTTTTTTTTCCCTTTTTCATCGTCACTAAATTTTGATTGATTCAGCTGAGATTTCTCATTTCTCACTGCTGCTTCCTCTATTGTTGGTTTCCATTCTTGTTTTCAATTATTCTTCACTTCCATCATTCTTTAAAAGTGGTTTTGAGTTTTGAATTTTGTTTGAAATAGAAGAGATACATTAATTTTACTGAGATGTTAATGTTATAAAAAAATGAGAAGTGTTAAAAGATTTGAAGATGTTAGATCTGTTGTTAACTGTAAAGTAAGACGGAATCTTAAGTTAAAGTATGACTTGAAAATGTGTTTTATTTCAGATCTCTTTACTTCAAAGAGATAACAAACCATACAAGTTTATTATAAAGGTAATTTGGTTTGAATTCTCTTGAAATGCAAGGAAAGCAGAATTCTGATTCATTGGATATTAAGTTTCTTTTTAGAACTGCAAATCATTGAAATTGATAAAAGTGGATCGTGAAAATGAAAAGAGAAGGTTGAATTGAAGAAACACCATTTTTTTAAGAAGGTGTTTTAAATGATGCAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTTAATTGGTAGTGCCTTGACTCTCTCTCTCACTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCGGTGTTTCAATCCTTCAAACATTTTTCATTGCTTCAAAGATGACACATCACATTGTCTACTCTTTTTCCAAATGTTGTAAGGTGAAGCAACTGAACCAGTTCAGGTGTGCATAAATAGTTGTTATGACTACTCATGGACAGAAATAAAAGGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGTGTGTTGAATTATTTTTGTCAACGGAAACAAGTTGTTGGAATCGTACTAGTTGTACTTTTGAAGAGGATGTGGATTTTAGACTCGTCCAAATAGTAAATGAGTTTAGATCTCATTTAACAGTTCTATTTTGATGAGGTTTTAATTGGATAGATAGGGGTTCATAGGACCATAGAAGATTTTGAAGGATAAAATAGAATTTGAGGTCTCTATGCCAACAAGTAAGTAGTGACAGTGTGATTCGGAATGTGAAGTCAAATGGGGATTTGGCCCACTTTGATGGGTTGTATTGAATGATCGGATTTTATAAAATTAGAGAATGGTTGAGATTCAGTGAGGATTCTGCTTTTGAATGTCTTGGAGATTTTCATCACACTGCTTTATGCTTCAGTGCTTCTGTTCTACTTCTGACTTGTGAGGATCCAAACCATTACTATTTTTCTAAAGTATGGGACCAGACAACATTAGGAATGTGAAATTGGAATTGTAAATTAAAGTCACACAAAGACAGAGACATATGATTAATAGATGCCATTATTGATTACATACTT

mRNA sequence

AAATACAAACCGTCAGATCATCATCCACTAGAAGATTCCAGCTGTTCACGATTCACATCAAAATTGCAAAAAGAAAAAGGAAACGAAAAAGAAAAAGAAAAAAGAAAATTAAATTAAAAAAAAAAAAAGAAAAAAAGAAAGGGGAAGAACAGAAATTACTCAAAATCCCCTGTTTGCAAATCTGTGCTCAAATCAAACAGTTAACAGAGCATTTTTTTTTTTTGAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCCGGGTTACTCTTCCCCTTCTCTGTAGGCTTCAGGATAATAAAAAACCTTTCTTTTTTCAATTTTCAATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTTAATTGGTAGTGCCTTGACTCTCTCTCTCACTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCGGTGTTTCAATCCTTCAAACATTTTTCATTGCTTCAAAGATGACACATCACATTGTCTACTCTTTTTCCAAATGTTGTAAGGTGAAGCAACTGAACCAGTTCAGGTGTGCATAAATAGTTGTTATGACTACTCATGGACAGAAATAAAAGGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGTGTGTTGAATTATTTTTGTCAACGGAAACAAGTTGTTGGAATCGTACTAGTTGTACTTTTGAAGAGGATGTGGATTTTAGACTCGTCCAAATAGTAAATGAGTTTAGATCTCATTTAACAGTTCTATTTTGATGAGGTTTTAATTGGATAGATAGGGGTTCATAGGACCATAGAAGATTTTGAAGGATAAAATAGAATTTGAGGTCTCTATGCCAACAAGTAAGTAGTGACAGTGTGATTCGGAATGTGAAGTCAAATGGGGATTTGGCCCACTTTGATGGGTTGTATTGAATGATCGGATTTTATAAAATTAGAGAATGGTTGAGATTCAGTGAGGATTCTGCTTTTGAATGTCTTGGAGATTTTCATCACACTGCTTTATGCTTCAGTGCTTCTGTTCTACTTCTGACTTGTGAGGATCCAAACCATTACTATTTTTCTAAAGTATGGGACCAGACAACATTAGGAATGTGAAATTGGAATTGTAAATTAAAGTCACACAAAGACAGAGACATATGATTAATAGATGCCATTATTGATTACATACTT

Coding sequence (CDS)

ATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAG

Protein sequence

MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

Homology

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BLAST of CsGy3G020430 vs. NCBI nr
Match: XP_004145857.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus] >KGN57766.1 hypothetical protein Csa_3G284020 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 1.5e-56
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKXXXXXXXXXXX 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKXXXXXXXXXXX
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXXKVKATLTEVSVQQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXXKVKATLTEVSVQQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXXKVKATLTEVSVQQ 180

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BLAST of CsGy3G020430 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo])

HSP 1 Score: 218.0 bits (554), Expect = 2.6e-53
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSP 109
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSS IS P
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 108

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BLAST of CsGy3G020430 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.2 bits (526), Expect = 4.6e-50
Identity = 100/109 (91.74%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPK 110
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PK
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPK 109

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BLAST of CsGy3G020430 vs. NCBI nr
Match: XP_022143283.1 (HMG-Y-related protein A-like [Momordica charantia])

HSP 1 Score: 200.7 bits (509), Expect = 4.3e-48
Identity = 100/108 (92.59%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT  VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATGGVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSP 109
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP S+V SSP
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLP-SNVASSP 107

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BLAST of CsGy3G020430 vs. NCBI nr
Match: PON55570.1 (High mobility group protein HMGA [Parasponia andersonii] >PON89055.1 High mobility group protein HMGA [Trema orientalis])

HSP 1 Score: 177.9 bits (450), Expect = 3.0e-41
Identity = 84/105 (80.00%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMI RAIEALN +NGSNKS+ISKYIESTYG+LP GHS+LL+HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVI 106
           N MK SG+LVFWKNNY K DP APPRRGRGRPPK K PLP  +V+
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPKVPLPPGAVL 105

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BLAST of CsGy3G020430 vs. TAIR10
Match: AT1G14900.1 (high mobility group A)

HSP 1 Score: 98.6 bits (244), Expect = 4.2e-21
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 11 SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
          SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22 SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71 FWKNNYMKRDPTAP 85
            KNNYMK DP AP
Sbjct: 82 MVKNNYMKPDPDAP 95

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BLAST of CsGy3G020430 vs. TAIR10
Match: AT1G48620.1 (high mobility group A5)

HSP 1 Score: 74.7 bits (182), Expect = 6.4e-14
Identity = 53/144 (36.81%), Postives = 67/144 (46.53%), Query Frame = 0


Query: 3   TQEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 62
           T  V   PS+  PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL
Sbjct: 64  TSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHL 123

Query: 63  NMMKASGDLVFWKNNYM---------------------------KRDPTAPP-------- 104
             +K SG LV  K +Y                            +  P   P        
Sbjct: 124 KTLKTSGILVMVKKSYKXXXXXXXXXXXXVAPSLEPPRSDFIVNENQPLPDPVLASSTPQ 183

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BLAST of CsGy3G020430 vs. TAIR10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-13
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNYMKRDPTAPP 86
           K +Y     + PP
Sbjct: 126 KKSYKIAGSSTPP 138

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BLAST of CsGy3G020430 vs. TAIR10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 6   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKA 65
           +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGDLVFWKNN 76
             +++   NN
Sbjct: 109 KREILCDCNN 118

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BLAST of CsGy3G020430 vs. Swiss-Prot
Match: sp|Q00423|HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-33
Identity = 71/105 (67.62%), Postives = 84/105 (80.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVI 106
           N MK SG+L F +NNYMK DP APP+RGRGRPPK K+PLP  +V+
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVV 103

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BLAST of CsGy3G020430 vs. Swiss-Prot
Match: sp|Q9FYS5|HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.6e-24
Identity = 56/89 (62.92%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
          MAT E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1  MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61 NMMKASGDLVFWKNNYMKRD-PTAPPRRG 89
            MK SG+LVF KNNY +   P APP+RG
Sbjct: 61 ARMKESGELVFLKNNYFRAGAPDAPPKRG 89

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BLAST of CsGy3G020430 vs. Swiss-Prot
Match: sp|Q10370|HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20
Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SG+L F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKSKSPLP 101
           P+RGRGRPPK K PLP
Sbjct: 61  PKRGRGRPPKPKVPLP 74

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BLAST of CsGy3G020430 vs. Swiss-Prot
Match: sp|Q43386|HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.5e-20
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 11 SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
          SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22 SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71 FWKNNYMKRDPTAP 85
            KNNYMK DP AP
Sbjct: 82 MVKNNYMKPDPDAP 95

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BLAST of CsGy3G020430 vs. TrEMBL
Match: tr|A0A0A0LCH9|A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 9.7e-57
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKXXXXXXXXXXX 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKXXXXXXXXXXX
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXXKVKATLTEVSVQQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXXKVKATLTEVSVQQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXXKVKATLTEVSVQQ 180

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BLAST of CsGy3G020430 vs. TrEMBL
Match: tr|A0A1S3C432|A0A1S3C432_CUCME (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.7e-53
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSP 109
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSS IS P
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 108

[Close]

BLAST of CsGy3G020430 vs. TrEMBL
Match: tr|A0A2P5EU67|A0A2P5EU67_9ROSA (High mobility group protein HMGA OS=Trema orientalis OX=63057 GN=TorRG33x02_151300 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.0e-41
Identity = 84/105 (80.00%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMI RAIEALN +NGSNKS+ISKYIESTYG+LP GHS+LL+HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVI 106
           N MK SG+LVFWKNNY K DP APPRRGRGRPPK K PLP  +V+
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPKVPLPPGAVL 105

[Close]

BLAST of CsGy3G020430 vs. TrEMBL
Match: tr|A0A2P5C3B6|A0A2P5C3B6_PARAD (High mobility group protein HMGA OS=Parasponia andersonii OX=3476 GN=PanWU01x14_187500 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.0e-41
Identity = 84/105 (80.00%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMI RAIEALN +NGSNKS+ISKYIESTYG+LP GHS+LL+HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVI 106
           N MK SG+LVFWKNNY K DP APPRRGRGRPPK K PLP  +V+
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPKVPLPPGAVL 105

[Close]

BLAST of CsGy3G020430 vs. TrEMBL
Match: tr|A0A0B0PVF4|A0A0B0PVF4_GOSAR (HMG-Y-related A OS=Gossypium arboreum OX=29729 GN=F383_33941 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 81/109 (74.31%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVN PPSLP YP++I  AIEALN  NGSNK++ISKYIES YG+LP GHSSLL+HHL
Sbjct: 1   MATEEVNNPPSLPSYPQLIINAIEALNDKNGSNKTSISKYIESKYGDLPAGHSSLLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPK 110
           N+MK SG+LVFWKNNYMK DP APPRRGRGRPPK K PLP   V+SS +
Sbjct: 61  NIMKESGELVFWKNNYMKADPNAPPRRGRGRPPKPKVPLPPGMVLSSAR 109

The following BLAST results are available for this feature:

BLAST of CsGy3G020430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145857.1	1.5e-56	100.00	PREDICTED: HMG-Y-related protein A-like [Cucumis sativus] >KGN57766.1 hypothetic...	[more]
XP_008456999.1	2.6e-53	98.15	PREDICTED: HMG-Y-related protein A-like [Cucumis melo]	[more]
XP_022935331.1	4.6e-50	91.74	HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ...	[more]
XP_022143283.1	4.3e-48	92.59	HMG-Y-related protein A-like [Momordica charantia]	[more]
PON55570.1	3.0e-41	80.00	High mobility group protein HMGA [Parasponia andersonii] >PON89055.1 High mobili...	[more]

BLAST of CsGy3G020430 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	4.2e-21	62.16	high mobility group A	[more]
AT1G48620.1	6.4e-14	36.81	high mobility group A5	[more]
AT3G18035.1	9.3e-13	49.32	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	2.4e-08	38.57	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of CsGy3G020430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q00423\|HMGYA_SOYBN	1.6e-33	67.62	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q9FYS5\|HMGYA_MAIZE	8.6e-24	62.92	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]
sp\|Q10370\|HMGYB_SOYBN	2.0e-20	67.11	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q43386\|HMGYA_ARATH	7.5e-20	62.16	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]

BLAST of CsGy3G020430 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCH9\|A0A0A0LCH9_CUCSA	9.7e-57	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1	[more]
tr\|A0A1S3C432\|A0A1S3C432_CUCME	1.7e-53	98.15	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
tr\|A0A2P5EU67\|A0A2P5EU67_9ROSA	2.0e-41	80.00	High mobility group protein HMGA OS=Trema orientalis OX=63057 GN=TorRG33x02_1513...	[more]
tr\|A0A2P5C3B6\|A0A2P5C3B6_PARAD	2.0e-41	80.00	High mobility group protein HMGA OS=Parasponia andersonii OX=3476 GN=PanWU01x14_...	[more]
tr\|A0A0B0PVF4\|A0A0B0PVF4_GOSAR	1.8e-39	74.31	HMG-Y-related A OS=Gossypium arboreum OX=29729 GN=F383_33941 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0000785	chromatin
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR031059	HMGA_plant
IPR036388	WH-like_DNA-bd_sf
IPR005818	Histone_H1/H5_H15
IPR017956	AT_hook_DNA-bd_motif
IPR000116	HMGA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G020430.1	CsGy3G020430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 106..118 score: 43.96 coord: 149..168 score: 41.43 coord: 135..146 score: 33.33
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 158..168 score: 68.56 coord: 86..96 score: 68.18 coord: 106..117 score: 56.94
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 160..172 e-value: 1.1 score: 15.1 coord: 86..98 e-value: 3.9 score: 11.9 coord: 137..149 e-value: 1.1 score: 15.1 coord: 108..120 e-value: 0.79 score: 15.8
IPR017956	AT hook, DNA-binding motif	PFAM	PF02178	AT_hook	coord: 87..97 e-value: 1.4 score: 8.9 coord: 108..119 e-value: 0.11 score: 12.4 coord: 160..170 e-value: 0.15 score: 11.9 coord: 137..145 e-value: 1.0 score: 9.4
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 9..75 e-value: 2.8E-22 score: 90.0
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 13..73 e-value: 2.5E-9 score: 37.3
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 11..80 score: 21.829
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 6..80 e-value: 2.2E-10 score: 42.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..128
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 4..179
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF49	SUBFAMILY NOT NAMED	coord: 4..179
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 8..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G020430	Cla013219	Watermelon (97103) v1	cgybwmB223
CsGy3G020430	Csa3G284020	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G020430	MELO3C020191	Melon (DHL92) v3.5.1	cgybmeB212
CsGy3G020430	ClCG05G011490	Watermelon (Charleston Gray)	cgybwcgB208
CsGy3G020430	CSPI03G20830	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G020430	Lsi05G003580	Bottle gourd (USVL1VR-Ls)	cgyblsiB190
CsGy3G020430	MELO3C020191.2	Melon (DHL92) v3.6.1	cgybmedB216
CsGy3G020430	CsaV3_3G020800	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G020430	Cla97C05G093550	Watermelon (97103) v2	cgybwmbB201
CsGy3G020430	Bhi01G001494	Wax gourd	cgybwgoB290
CsGy3G020430	Carg22258	Silver-seed gourd	carcgybB0488

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G020430	Cucurbita maxima (Rimu)	cgybcmaB308
CsGy3G020430	Cucurbita maxima (Rimu)	cgybcmaB368
CsGy3G020430	Cucurbita moschata (Rifu)	cgybcmoB281
CsGy3G020430	Cucurbita moschata (Rifu)	cgybcmoB339
CsGy3G020430	Cucurbita pepo (Zucchini)	cgybcpeB380
CsGy3G020430	Cucurbita pepo (Zucchini)	cgybcpeB397
CsGy3G020430	Bottle gourd (USVL1VR-Ls)	cgyblsiB199
CsGy3G020430	Watermelon (Charleston Gray)	cgybwcgB217
CsGy3G020430	Watermelon (97103) v1	cgybwmB232
CsGy3G020430	Silver-seed gourd	carcgybB0489
CsGy3G020430	Silver-seed gourd	carcgybB0757
CsGy3G020430	Watermelon (97103) v2	cgybwmbB209
CsGy3G020430	Wax gourd	cgybwgoB259