CSPI03G20830 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G20830
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	HMG-Y-related protein A
Location	Chr3 : 16869036 .. 16871650 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAGAAAATTAAATTAAAAAAAAAAAAAGAAAAAAAGAAAGGGGAAGAACAGAAATTACTCAAAATCCCCTGTTTGCAAATCTGTGCTCAAATCAAACAGTTAACAGAGCATTTTTTTTTTTTTTTGAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCCGGGTTACTCTTCCCCTTCTCTGTAGGCTTCAGGATAATAAAAAACCTTTCTTTTTTCAATTTTCAATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCCTTTCCTCTTTCTCTCTTCCAGTTTCAGATACCCATCTACCAAAAACAATCATCTGTCCTTTTCTTTTCCTCTTAATTTTTTTTACCTCTAATTTGTTGAATCTATTATGGGTTTATGTGTTATGTCTTAATTTGTTCTTCAATTAGGGTTTCTTGTGATTTGTTTCTGATTTTTGTATCTTGTTTACTGAACTTCTTTTTTTTTTTTTTTTTTTGATTTTTTTCTTCTTGTTATGTTGTAATTTGGTGAACAGGGGAGAGTCCTTTTTTTTTTTTTTTTTTTTTTCTTTCTTCTTTGTGTTTTCTTTCATTTCCTTCTCGAATCTGAGTATTCTTTTTGGAAAAAATATTGGAATGGTTTTTTTTTTTCCCTTTTTCATCGTCACTAAATTTTGATTGATTCAGCTGAGATTTCTCATTTCTCACTGCTGCTTCCTCTATTGTTGGTTTCCATTCTTGTTTTCAATTATTCTTCACTTCCATCATTCTTTAAAAGTGGTTTTGAGTTTTGAATTTTGTTTGAAATAGAAGAGATACATTAATTTTACTGAGATGTTAATGTTATAAAAAAATGAGAAGTGTTAAAAGATTTGAAGATGTTAGATCTGTTGTTAACTGTAAAGTAAGACGGAATCTTAAGTTAAAGTATGACTTGAAAATGTGTTTTATTTCAGATCTCTTTACTTCAAAGAGATAACAAACCATACAAGTTTATTATAAAGGTAATTTGGTTTGAATTCTCTTGAAATGCAAGGAAAGCAGAATTCTGATTCATTGGATATTAAGTTTCTTTTTAGAACTGCAAATCATTGAAATTGATAAAAGTGGATCGTGAAAATGAAAAGAGAAGGTTGAATTGAAGAAACACCATTTTTTTAAGAAGGTGTTTTAAATGATGCAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTTAATTGGTAGTGCCTTGACTCTCTCTCTCACTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCGGTGTTTCAATCCTTCAAACATTTTTCATTGCTTCAAAGATGACACATCACATTGTCTACTCTTTTTCCAAATGTTGTAAGGTGAAGCAACTGAACCAGTTCAGGTGTGCATAAATAGTTGTTATGACTACTCATGGACAGAAATAAAAGGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGTGTGTTGAATTATTTTTGTCAACGGAAACAAGTTGTTGGAATCGTACTAGTTGTACTTTTGAAGAGGATGTGGATTTTAGACTCGTCCAAATAGTAAATGAGTTTAGATCTCATTTAACAGTTCTATTTTGATGAGGTTTTAATTGGATAGATAGGGGTTCATAGGACCATAGAAGATTTTGAAGGATAAAATAGAATTTGAGGTCTCTATGCCAACAAGTAAGTAGTGACAGTGTGATTCGGAATGTGAAGTCAAATGGGGATTTGGCCCACTTTGATGGGTTGTATTGAATGATCGGATTTTATAAAATTAGAGAATGGTTGAGATTCAGTGAGGATTCTGCTTTTGAATGTCTTGGAGATTTTCATCACACTGCTTTATGCTTCAGTGCTTCTGTTCTACTTCTGACTTGTGAGGATCCAAACCATTACTATTTTTCTAAAGTATGGGACCAGACAACATTAGGAATGTGAAATTGGAATTGTAAATTAAAGTCACACA

mRNA sequence

ATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAG

Coding sequence (CDS)

ATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAG

Homology

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BLAST of CSPI03G20830 vs. Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 9.0e-58
Identity = 121/180 (67.22%), Postives = 142/180 (78.89%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPD--ATVLGSHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           N MK SG+L F +NNYMK DP APP+RGRGRPPK K+PLP  +V+S P+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPA-PSGRPRGRPPKVKATLTEVSVQ 180
           PPK PK    K + G+G+PRGRP+K P+S +  AP A  SGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PPKSPK---AKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSVE 175

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BLAST of CSPI03G20830 vs. Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-44
Identity = 101/156 (64.74%), Postives = 118/156 (75.64%), Query Frame = 1


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SG+L F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPR 144
           P+RGRGRPPK K PLP  +V+S P+PRGRPPKDPNAPPK PK    K +  TG+PRGRP+
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPK---AKATPATGRPRGRPK 120

Query: 145 KFPQSASTPAPPAPS-GRPRGRPPKVKATLTEVSVQ 180
           K  +S + P+P A S GRPRGRPPKVK  LTEVSV+
Sbjct: 121 KVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSVE 151

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BLAST of CSPI03G20830 vs. Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-36
Identity = 95/181 (52.49%), Postives = 121/181 (66.85%), Query Frame = 1


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKSK---------SPLPLSSVISS--PKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K         + +  ++V+S+  P+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPKPVQMKVSSGTGKPRGRPRKFPQSAS-TPAPPAPSG------RPRGRPPKVKAT 174
            P  P +P Q KV +G+G+PRGRP K P++ S T A P P+       R RGRPPKVK T
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVKPT 198

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BLAST of CSPI03G20830 vs. Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.4e-34
Identity = 95/186 (51.08%), Postives = 117/186 (62.90%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGDLVFWKNNYMKRD-PTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPN 120
             MK SG+LVF KNNY +   P APP+RGRGRPPK++ P   +    SP   GR      
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGR---GRG 120

Query: 121 APPKPPKPVQMKV---SSGTGKPRGRPRKFPQS--ASTPAP---PAPSG-------RPRG 171
            PPK   P++  V   ++G  KPRGRP K  ++  A++P+P   PAP+G       R RG
Sbjct: 121 RPPKAKSPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRG 180

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BLAST of CSPI03G20830 vs. TrEMBL
Match: A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 8.4e-95
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

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BLAST of CSPI03G20830 vs. TrEMBL
Match: Q42461_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.2e-63
Identity = 129/180 (71.67%), Postives = 149/180 (82.78%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEM+ +A++ALN  +GSNKS ISKYIESTYG LP GH++LL HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           N MK SG+LVF KNNYMK DP APP+RGRGRPPK K PLP  +V+S P+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAP-PAPSGRPRGRPPKVKATLTEVSVQ 180
           PPK PK    KVS+G+G+PRGRP+K  +S +  AP P PSGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PPKSPK---TKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEVSVE 177

[Close]

BLAST of CSPI03G20830 vs. TrEMBL
Match: Q42492_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.2e-62
Identity = 129/180 (71.67%), Postives = 148/180 (82.22%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPY EMI +A+++LN  NGSNKS ISKYIEST G LP GHS+LL HHL
Sbjct: 1   MATEEVNKPPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           N MK SG+LVF KNNYMK DPT+PP+RGRGRPPK K PLP  +V+S P+PRGRPPKDPNA
Sbjct: 61  NKMKESGELVFLKNNYMKPDPTSPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAP-PAPSGRPRGRPPKVKATLTEVSVQ 180
           P K PK    KVS+G+G+PRGRP+K  +SA+  AP P PSGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PTKSPK---AKVSTGSGRPRGRPKKIARSAAVVAPTPGPSGRPRGRPPKVKPQLTEVSVE 177

[Close]

BLAST of CSPI03G20830 vs. TrEMBL
Match: M5XB09_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.9e-60
Identity = 130/186 (69.89%), Postives = 147/186 (79.03%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKP SLPPYPEMI +AIEALN  NGSNKS+ISK+IESTYG+LP GH+SLL+HHL
Sbjct: 1   MATEEVNKPLSLPPYPEMILKAIEALNEKNGSNKSSISKFIESTYGDLPAGHNSLLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           N MK SG+LVFWKNNY K DP APPRRGRGRPPK K  LP  +V+   +PRGRPPKDPNA
Sbjct: 61  NKMKDSGELVFWKNNYTKPDPNAPPRRGRGRPPKPKDSLPPDAVLGPTRPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQ-----SASTPAPPAPSGRPRGRPPKVKATLT- 180
           PPKPPK   +KVSSG+GKPRGRPRK  +     S S        GRPRGRPPKVK +L+ 
Sbjct: 121 PPKPPK---VKVSSGSGKPRGRPRKMAKPTGGLSGSATVTDTMPGRPRGRPPKVKDSLSA 180

[Close]

BLAST of CSPI03G20830 vs. TrEMBL
Match: A0A061ENL6_THECC (High mobility group A isoform 1 OS=Theobroma cacao GN=TCM_019130 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.3e-58
Identity = 126/183 (68.85%), Postives = 145/183 (79.23%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLP YP+MI  AIEALN  NGSNK++ISKYIES YG+LP GH++LL+HHL
Sbjct: 1   MATEEVNKPPSLPSYPQMIVNAIEALNDKNGSNKTSISKYIESQYGDLPAGHTTLLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           N MK +G+L+FWKNNYMK DP APPRRGRGRPPKSK PLP   V+S  +PRGRPPKDPNA
Sbjct: 61  NRMKETGELIFWKNNYMKADPNAPPRRGRGRPPKSKDPLPPGVVLSPARPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSA-----STPAPPAPSGRPRGRPPKVKAT-LT 178
           PPK PKP   KV+SGTGKPRGRPRK  + A     S+      + RPRGRPPKVKA+ LT
Sbjct: 121 PPKSPKP---KVASGTGKPRGRPRKMARPAGGIGGSSTTTMVAAVRPRGRPPKVKASALT 180

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BLAST of CSPI03G20830 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A)

HSP 1 Score: 154.1 bits (388), Expect = 8.4e-38
Identity = 95/181 (52.49%), Postives = 121/181 (66.85%), Query Frame = 1


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKSK---------SPLPLSSVISS--PKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K         + +  ++V+S+  P+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPKPVQMKVSSGTGKPRGRPRKFPQSAS-TPAPPAPSG------RPRGRPPKVKAT 174
            P  P +P Q KV +G+G+PRGRP K P++ S T A P P+       R RGRPPKVK T
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVKPT 198

[Close]

BLAST of CSPI03G20830 vs. TAIR10
Match: AT1G48620.1 (AT1G48620.1 high mobility group A5)

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-13
Identity = 75/195 (38.46%), Postives = 93/195 (47.69%), Query Frame = 1


Query: 3   TQEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 62
           T  V   PS+  PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL
Sbjct: 64  TSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHL 123

Query: 63  NMMKASGDLVFWKNNY-MKRDPTAPPRRGRG---RPPKS------KSPLPLSSVISSPKP 122
             +K SG LV  K +Y +   P  PP         PP+S        PLP   V++S  P
Sbjct: 124 KTLKTSGILVMVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLP-DPVLASSTP 183

Query: 123 ------RGRPPKDPNAPPKPPKPVQMKVS-SGTGKPRGRPRKF----PQSASTPAPPA-- 171
                 RGRPPK      +P      K++   +  P  RP +     PQ    P  P   
Sbjct: 184 QTIKRGRGRPPKAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVKR 243

[Close]

BLAST of CSPI03G20830 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-11
Identity = 63/178 (35.39%), Postives = 84/178 (47.19%), Query Frame = 1


Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNYMKRDPTAPPRR--------------GRGRPPKSKSPLPLSSVISS---PKPRGRPP 132
           K +Y     + PP                 R     S +  P++S  +S    + RGRPP
Sbjct: 126 KKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPP 185

Query: 133 KDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAP-PAP----SGRPRGRPPK 169
           K    P   P+P+Q    +   +  G+P    Q   +P P P P    + R  GRP K
Sbjct: 186 KP--KPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPRK 241

[Close]

BLAST of CSPI03G20830 vs. TAIR10
Match: AT5G08780.1 (AT5G08780.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 1


Query: 6   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKA 65
           +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGDLVFWKNN 76
             +++   NN
Sbjct: 109 KREILCDCNN 118

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BLAST of CSPI03G20830 vs. NCBI nr
Match: gi|449456239|ref|XP_004145857.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830 vs. NCBI nr
Match: gi|659114297|ref|XP_008456999.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis melo])

HSP 1 Score: 349.7 bits (896), Expect = 3.0e-93
Identity = 177/180 (98.33%), Postives = 178/180 (98.89%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSS IS PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180
           PPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of CSPI03G20830 vs. NCBI nr
Match: gi|1181589|dbj|BAA11766.1| (high mobility group protein [Canavalia gladiata])

HSP 1 Score: 250.0 bits (637), Expect = 3.2e-63
Identity = 129/180 (71.67%), Postives = 149/180 (82.78%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEM+ +A++ALN  +GSNKS ISKYIESTYG LP GH++LL HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           N MK SG+LVF KNNYMK DP APP+RGRGRPPK K PLP  +V+S P+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAP-PAPSGRPRGRPPKVKATLTEVSVQ 180
           PPK PK    KVS+G+G+PRGRP+K  +S +  AP P PSGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PPKSPK---TKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEVSVE 177

[Close]

BLAST of CSPI03G20830 vs. NCBI nr
Match: gi|1181591|dbj|BAA11767.1| (high mobility group protein [Canavalia gladiata])

HSP 1 Score: 245.0 bits (624), Expect = 1.0e-61
Identity = 129/180 (71.67%), Postives = 148/180 (82.22%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPY EMI +A+++LN  NGSNKS ISKYIEST G LP GHS+LL HHL
Sbjct: 1   MATEEVNKPPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           N MK SG+LVF KNNYMK DPT+PP+RGRGRPPK K PLP  +V+S P+PRGRPPKDPNA
Sbjct: 61  NKMKESGELVFLKNNYMKPDPTSPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAP-PAPSGRPRGRPPKVKATLTEVSVQ 180
           P K PK    KVS+G+G+PRGRP+K  +SA+  AP P PSGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PTKSPK---AKVSTGSGRPRGRPKKIARSAAVVAPTPGPSGRPRGRPPKVKPQLTEVSVE 177

[Close]

BLAST of CSPI03G20830 vs. NCBI nr
Match: gi|1009126639|ref|XP_015880263.1| (PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba])

HSP 1 Score: 240.4 bits (612), Expect = 2.5e-60
Identity = 130/186 (69.89%), Postives = 143/186 (76.88%), Query Frame = 1


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT EVNK  SLPPYPEMI RAIEALN  NGSNKSTISKYIESTYG LP GHS LL+HHL
Sbjct: 1   MATGEVNKRQSLPPYPEMIIRAIEALNDKNGSNKSTISKYIESTYGELPAGHSQLLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120
           N MK SG+LVFWKNNY K DP APPRRGRGRPPK K PLP  + +   +PRGRPPKDP+A
Sbjct: 61  NRMKESGELVFWKNNYTKADPNAPPRRGRGRPPKPKEPLPPGASLGPMRPRGRPPKDPDA 120

Query: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQ------SASTPAPPAPSGRPRGRPPKVKATLT 180
           PPKP K   +K+SSG+GKPRGRPRK  +      +++T    A  GR RGRPPKVK T T
Sbjct: 121 PPKPTK---LKISSGSGKPRGRPRKMARPTGGLGASTTTMATATGGRGRGRPPKVKPTFT 180

The following BLAST results are available for this feature:

BLAST of CSPI03G20830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGYA_SOYBN	9.0e-58	67.22	HMG-Y-related protein A OS=Glycine max PE=2 SV=1	[more]
HMGYB_SOYBN	1.1e-44	64.74	HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1	[more]
HMGYA_ARATH	1.5e-36	52.49	HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1	[more]
HMGYA_MAIZE	2.4e-34	51.08	HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1	[more]

BLAST of CSPI03G20830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCH9_CUCSA	8.4e-95	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1	[more]
Q42461_CANGL	2.2e-63	71.67	High mobility group protein OS=Canavalia gladiata PE=2 SV=1	[more]
Q42492_CANGL	7.2e-62	71.67	High mobility group protein OS=Canavalia gladiata PE=2 SV=1	[more]
M5XB09_PRUPE	3.9e-60	69.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1	[more]
A0A061ENL6_THECC	1.3e-58	68.85	High mobility group A isoform 1 OS=Theobroma cacao GN=TCM_019130 PE=3 SV=1	[more]

BLAST of CSPI03G20830 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	8.4e-38	52.49	high mobility group A	[more]
AT1G48620.1	4.2e-13	38.46	high mobility group A5	[more]
AT3G18035.1	3.9e-11	35.39	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	2.4e-08	38.57	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of CSPI03G20830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456239\|ref\|XP_004145857.1\|	1.2e-94	100.00	PREDICTED: HMG-Y-related protein A-like [Cucumis sativus]	[more]
gi\|659114297\|ref\|XP_008456999.1\|	3.0e-93	98.33	PREDICTED: HMG-Y-related protein A-like [Cucumis melo]	[more]
gi\|1181589\|dbj\|BAA11766.1\|	3.2e-63	71.67	high mobility group protein [Canavalia gladiata]	[more]
gi\|1181591\|dbj\|BAA11767.1\|	1.0e-61	71.67	high mobility group protein [Canavalia gladiata]	[more]
gi\|1009126639\|ref\|XP_015880263.1\|	2.5e-60	69.89	PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000116	HMGA
IPR005818	Histone_H1/H5_H15
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR017956	AT_hook_DNA-bd_motif
IPR000116	HMGA
IPR005818	Histone_H1/H5_H15
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR017956	AT_hook_DNA-bd_motif

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000785	chromatin
GO:0000786	nucleosome
GO:0005634	nucleus
GO:0000785	chromatin
GO:0000786	nucleosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006334	nucleosome assembly
GO:0006355	regulation of transcription, DNA-templated
GO:0006334	nucleosome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20830.1	CSPI03G20830.1	mRNA
CSPI03G20830.2	CSPI03G20830.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 89..101 score: 7.6E-6coord: 118..129 score: 7.6E-6coord: 132..151 score: 7.
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 1..56 score: 1.
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 1..58 score: 1.6
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 1..63 score: 19
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 1..61 score: 3.7
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 1..70 score: 8.16
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 89..100 score: 1.2E-14coord: 69..79 score: 1.2E-14coord: 141..151 score: 1.2
IPR017956	AT hook, DNA-binding motif	PFAM	PF02178	AT_hook	coord: 91..102 score: 0.09coord: 120..128 score: 0.87coord: 143..153 score: 0.13coord: 70..80 score:
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 91..103 score: 0.79coord: 69..81 score: 3.9coord: 143..155 score: 1.1coord: 120..132 score:
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 1..154 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G20830	Cla013219	Watermelon (97103) v1	cpiwmB236
CSPI03G20830	Csa3G284020	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G20830	MELO3C020191	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G20830	ClCG05G011490	Watermelon (Charleston Gray)	cpiwcgB230
CSPI03G20830	Lsi05G003580	Bottle gourd (USVL1VR-Ls)	cpilsiB203
CSPI03G20830	MELO3C020191.2	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G20830	CsaV3_3G020800	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G20830	Cla97C05G093550	Watermelon (97103) v2	cpiwmbB213
CSPI03G20830	Bhi01G001494	Wax gourd	cpiwgoB303
CSPI03G20830	Cucsa.031270	Cucumber (Gy14) v1	cgycpiB003
CSPI03G20830	Cp4.1LG02g16890	Cucurbita pepo (Zucchini)	cpecpiB550
CSPI03G20830	CsGy3G020430	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G20830	Carg22258	Silver-seed gourd	carcpiB0519

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G20830	Melon (DHL92) v3.6.1	cpimedB229
CSPI03G20830	Silver-seed gourd	carcpiB0520
CSPI03G20830	Silver-seed gourd	carcpiB0798
CSPI03G20830	Watermelon (97103) v2	cpiwmbB224
CSPI03G20830	Wax gourd	cpiwgoB271
CSPI03G20830	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G20830	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G20830	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G20830	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G20830	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G20830	Bottle gourd (USVL1VR-Ls)	cpilsiB210