MELO3C020191.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020191.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	HMG-Y-related protein A-like
Location	chr06 : 17182508 .. 17184889 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAGAAAAAATAAAATAAAATAAAAAAATGAAAGGGGAAGAACAGAAATTACTCAAAATCCCCTGTTTGCAAATCTGTGCTCAAATCAAACAGTTAACAGAGCATTTTTTTTTTGGAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCTGGGTTACTCTTCCCCTTCTCTGTAGGCTTCAGGATAATAAAAAACCTTTCTTTTTTCAATTTTCAATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCCTCTCCTCTTTCTCTCTTCCATTTTCAGATACCCATCTGCCAAAAACAATCATCTGTCCTTTTTTTTTCATCTTAATTTGTTTTACCTCTAATTTGTTGAATCTATTCTGGGTTTATGTGTTATGTCTTAATTTGTTCTTCAATTAGGGTTTCTTGTGATTTGTTTCTGATATTTTGTATCTTGTTCACTGAATTTCGTTTTTTTGTTTGATTTTTTTGTTGTTGTTATGTTGTGATTTGGTGAACGGGGAAAAACCCATTTCCTTATGTTTTCTTTCATTTCCTTCTCGAATCTGCGTGTTTTAATGGAAAAAATTATTGGAATGCTTTTTTTTTTTTTTTCCTTTTTCATTGTCACTAAATTTTGATTGATTCAGCTGAGCTTTCCTCATTTCTCACTGCTGCTTCCTCTATTGTTTGTTTCCATTCTTGTTTTCGATTATTCTTCACTTCCACCATTCTTTAGAAGCGGTTTTGAGTTTTGAATTTTGTTTGAAATACATACATTATTTTTACTGAGATGTTAATGTTATAAAAAAAAAAGAAGTGTTATAAGATTTTAAGATGTGAGATCTGTTGTTAACTGTAAGATAAGACGGAATCTTAAGTTAAAGTATGATTTGAAGATGTATTTGATTTCAGATCTCTTTACTTCAAAGAGATAACAAACCATACACGTTTATTAGAAATGTAATTTGGTTTGAATTCTCTTGAAATGCTGGGAAAGCAGAATTCTGATTCATTGGATATTAAGTTTTTTTTTTAGATCTGCAAATCATTGAAGTTGATGAAAGTGGATCGTGAAAATGAAAAGAGAAAGGTTGAATTGAAGAAACACCAATTTTTTTTAAAAGGTGTTTTAAATAATGCAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCGAACAAGTCCACAATATCAAAGTACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCTCCCCGACGAGGTCGTGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGCAATATCCCCACCAAAGCCGAGAGGCCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGACCAAGGAAATTCCCTCAGTCAGCAACCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACGGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTTAATTGGTAGTGCCTTGACTCTCCCTCTCTCTCACTCTCTTATTTGTCTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCAGTGTTTCGATCCTTCAAACATTTTTCAATGCTTCAAACATGACACATCACATTGTCTACTCTTTTTCCAAGTGTTGTAAGGTGAAGCAATTGAATCAGTTAAGGTGTGCATAAATAGTTGTTATGACTACTCATGGACAGAAATAAAAAGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCTATTGGTTGTATGTTGAATTATTTTTGTCAACGGAAACAAGTTTGTTGGAATCGTACTAGTTGTACTTTTTGAAGAGGATGTGGATTTTAGACTCATCCAAATTGTAAATGAGTTTAGATCTCTTTTAACAGTTCTATTTTGATTTAGTTTTAATTGGACAGATAGGGGTTCATAGGACCATTGAGGTCTGGAGGATTTTGTAGGATAAAATAGAATTTGAGGTCTCTATGCCAACAAGTAACTAGTGACAGTGATTCAGAATGTGAAGTCAAATGGAGATTTGGCCCACTTTGAAGGGTTGTATTGAATGATCAGCTTTTA

mRNA sequence

GAAAAGAAAAAATAAAATAAAATAAAAAAATGAAAGGGGAAGAACAGAAATTACTCAAAATCCCCTGTTTGCAAATCTGTGCTCAAATCAAACAGTTAACAGAGCATTTTTTTTTTGGAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCTGGGTTACTCTTCCCCTTCTCTGTAGGCTTCAGGATAATAAAAAACCTTTCTTTTTTCAATTTTCAATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCGAACAAGTCCACAATATCAAAGTACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCTCCCCGACGAGGTCGTGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGCAATATCCCCACCAAAGCCGAGAGGCCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGACCAAGGAAATTCCCTCAGTCAGCAACCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACGGAAGTTAGTGTTCAACAATAGATTGTTGCAGTGCAGTTAATTGGTAGTGCCTTGACTCTCCCTCTCTCTCACTCTCTTATTTGTCTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGTAGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTCTTCAGTGTTTCGATCCTTCAAACATTTTTCAATGCTTCAAACATGACACATCACATTGTCTACTCTTTTTCCAAGTGTTGTAAGGTGAAGCAATTGAATCAGTTAAGGTGTGCATAAATAGTTGTTATGACTACTCATGGACAGAAATAAAAAGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCTATTGGTTGTATGTTGAATTATTTTTGTCAACGGAAACAAGTTTGTTGGAATCGTACTAGTTGTACTTTTTGAAGAGGATGTGGATTTTAGACTCATCCAAATTGTAAATGAGTTTAGATCTCTTTTAACAGTTCTATTTTGATTTAGTTTTAATTGGACAGATAGGGGTTCATAGGACCATTGAGGTCTGGAGGATTTTGTAGGATAAAATAGAATTTGAGGTCTCTATGCCAACAAGTAACTAGTGACAGTGATTCAGAATGTGAAGTCAAATGGAGATTTGGCCCACTTTGAAGGGTTGTATTGAATGATCAGCTTTTA

Coding sequence (CDS)

ATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCGAACAAGTCCACAATATCAAAGTACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCTCCCCGACGAGGTCGTGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGCAATATCCCCACCAAAGCCGAGAGGCCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGACCAAGGAAATTCCCTCAGTCAGCAACCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACGGAAGTTAGTGTTCAACAATAG

Protein sequence

MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

Homology

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BLAST of MELO3C020191.2 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 1.8e-54
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 109
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 108

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BLAST of MELO3C020191.2 vs. NCBI nr
Match: XP_004145857.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus] >KGN57766.1 hypothetical protein Csa_3G284020 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 4.4e-53
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 109
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSS IS P
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSP 108

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BLAST of MELO3C020191.2 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 1.0e-49
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 109
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  S +SPP
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPP 108

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BLAST of MELO3C020191.2 vs. NCBI nr
Match: XP_022143283.1 (HMG-Y-related protein A-like [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 1.1e-48
Identity = 99/108 (91.67%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT  VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATGGVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 109
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP + A SPP
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPSNVASSPP 108

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BLAST of MELO3C020191.2 vs. NCBI nr
Match: PON55570.1 (High mobility group protein HMGA [Parasponia andersonii] >PON89055.1 High mobility group protein HMGA [Trema orientalis])

HSP 1 Score: 175.3 bits (443), Expect = 1.9e-40
Identity = 83/100 (83.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMI RAIEALN +NGSNKS+ISKYIESTYG+LP GHS+LL+HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP 101
           N MK SG+LVFWKNNY K DP APPRRGRGRPPK K PLP
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPKVPLP 100

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BLAST of MELO3C020191.2 vs. TAIR10
Match: AT1G14900.1 (high mobility group A)

HSP 1 Score: 98.6 bits (244), Expect = 4.2e-21
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 11 SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
          SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22 SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71 FWKNNYMKRDPTAP 85
            KNNYMK DP AP
Sbjct: 82 MVKNNYMKPDPDAP 95

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BLAST of MELO3C020191.2 vs. TAIR10
Match: AT1G48620.1 (high mobility group A5)

HSP 1 Score: 74.7 bits (182), Expect = 6.4e-14
Identity = 53/144 (36.81%), Postives = 67/144 (46.53%), Query Frame = 0


Query: 3   TQEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 62
           T  V   PS+  PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL
Sbjct: 64  TSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHL 123

Query: 63  NMMKASGDLVFWKNNYM---------------------------KRDPTAPP-------- 104
             +K SG LV  K +Y                            +  P   P        
Sbjct: 124 KTLKTSGILVMVKKSYKXXXXXXXXXXXXVAPSLEPPRSDFIVNENQPLPDPVLASSTPQ 183

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BLAST of MELO3C020191.2 vs. TAIR10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 70.9 bits (172), Expect = 9.3e-13
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNYMKRDPTAPP 86
           K +Y     + PP
Sbjct: 126 KKSYKIAGSSTPP 138

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BLAST of MELO3C020191.2 vs. TAIR10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 6   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKA 65
           +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGDLVFWKNN 76
             +++   NN
Sbjct: 109 KREILCDCNN 118

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BLAST of MELO3C020191.2 vs. Swiss-Prot
Match: sp|Q00423|HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.9e-33
Identity = 70/105 (66.67%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAI 106
           N MK SG+L F +NNYMK DP APP+RGRGRPPK K+PLP  + +
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVV 103

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BLAST of MELO3C020191.2 vs. Swiss-Prot
Match: sp|Q9FYS5|HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 56/89 (62.92%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
          MAT E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1  MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61 NMMKASGDLVFWKNNYMKRD-PTAPPRRG 89
            MK SG+LVF KNNY +   P APP+RG
Sbjct: 61 ARMKESGELVFLKNNYFRAGAPDAPPKRG 89

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BLAST of MELO3C020191.2 vs. Swiss-Prot
Match: sp|Q10370|HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-20
Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SG+L F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKSKSPLP 101
           P+RGRGRPPK K PLP
Sbjct: 61  PKRGRGRPPKPKVPLP 74

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BLAST of MELO3C020191.2 vs. Swiss-Prot
Match: sp|Q43386|HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.5e-20
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 11 SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
          SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22 SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71 FWKNNYMKRDPTAP 85
            KNNYMK DP AP
Sbjct: 82 MVKNNYMKPDPDAP 95

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BLAST of MELO3C020191.2 vs. TrEMBL
Match: tr|A0A1S3C432|A0A1S3C432_CUCME (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.2e-54
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 109
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 108

[Close]

BLAST of MELO3C020191.2 vs. TrEMBL
Match: tr|A0A0A0LCH9|A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.9e-53
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPP 109
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSS IS P
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSP 108

[Close]

BLAST of MELO3C020191.2 vs. TrEMBL
Match: tr|A0A2P5EU67|A0A2P5EU67_9ROSA (High mobility group protein HMGA OS=Trema orientalis OX=63057 GN=TorRG33x02_151300 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 83/100 (83.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMI RAIEALN +NGSNKS+ISKYIESTYG+LP GHS+LL+HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP 101
           N MK SG+LVFWKNNY K DP APPRRGRGRPPK K PLP
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPKVPLP 100

[Close]

BLAST of MELO3C020191.2 vs. TrEMBL
Match: tr|A0A2P5C3B6|A0A2P5C3B6_PARAD (High mobility group protein HMGA OS=Parasponia andersonii OX=3476 GN=PanWU01x14_187500 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 83/100 (83.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMI RAIEALN +NGSNKS+ISKYIESTYG+LP GHS+LL+HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP 101
           N MK SG+LVFWKNNY K DP APPRRGRGRPPK K PLP
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPKVPLP 100

[Close]

BLAST of MELO3C020191.2 vs. TrEMBL
Match: tr|A0A0B0PVF4|A0A0B0PVF4_GOSAR (HMG-Y-related A OS=Gossypium arboreum OX=29729 GN=F383_33941 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.0e-38
Identity = 79/106 (74.53%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVN PPSLP YP++I  AIEALN  NGSNK++ISKYIES YG+LP GHSSLL+HHL
Sbjct: 1   MATEEVNNPPSLPSYPQLIINAIEALNDKNGSNKTSISKYIESKYGDLPAGHSSLLSHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAIS 107
           N+MK SG+LVFWKNNYMK DP APPRRGRGRPPK K PLP    +S
Sbjct: 61  NIMKESGELVFWKNNYMKADPNAPPRRGRGRPPKPKVPLPPGMVLS 106

The following BLAST results are available for this feature:

BLAST of MELO3C020191.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456999.1	1.8e-54	100.00	PREDICTED: HMG-Y-related protein A-like [Cucumis melo]	[more]
XP_004145857.1	4.4e-53	98.15	PREDICTED: HMG-Y-related protein A-like [Cucumis sativus] >KGN57766.1 hypothetic...	[more]
XP_022935331.1	1.0e-49	91.67	HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ...	[more]
XP_022143283.1	1.1e-48	91.67	HMG-Y-related protein A-like [Momordica charantia]	[more]
PON55570.1	1.9e-40	83.00	High mobility group protein HMGA [Parasponia andersonii] >PON89055.1 High mobili...	[more]

BLAST of MELO3C020191.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	4.2e-21	62.16	high mobility group A	[more]
AT1G48620.1	6.4e-14	36.81	high mobility group A5	[more]
AT3G18035.1	9.3e-13	49.32	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	2.4e-08	38.57	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of MELO3C020191.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q00423\|HMGYA_SOYBN	5.9e-33	66.67	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q9FYS5\|HMGYA_MAIZE	1.1e-23	62.92	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]
sp\|Q10370\|HMGYB_SOYBN	2.6e-20	67.11	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q43386\|HMGYA_ARATH	7.5e-20	62.16	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]

BLAST of MELO3C020191.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C432\|A0A1S3C432_CUCME	1.2e-54	100.00	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
tr\|A0A0A0LCH9\|A0A0A0LCH9_CUCSA	2.9e-53	98.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1	[more]
tr\|A0A2P5EU67\|A0A2P5EU67_9ROSA	1.3e-40	83.00	High mobility group protein HMGA OS=Trema orientalis OX=63057 GN=TorRG33x02_1513...	[more]
tr\|A0A2P5C3B6\|A0A2P5C3B6_PARAD	1.3e-40	83.00	High mobility group protein HMGA OS=Parasponia andersonii OX=3476 GN=PanWU01x14_...	[more]
tr\|A0A0B0PVF4\|A0A0B0PVF4_GOSAR	2.0e-38	74.53	HMG-Y-related A OS=Gossypium arboreum OX=29729 GN=F383_33941 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0000785	chromatin
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR031059	HMGA_plant
IPR036388	WH-like_DNA-bd_sf
IPR005818	Histone_H1/H5_H15
IPR017956	AT_hook_DNA-bd_motif
IPR000116	HMGA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000785	chromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020191.2.1	MELO3C020191.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 149..168 score: 43.57 coord: 135..146 score: 33.33 coord: 106..118 score: 43.96
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 158..168 score: 68.56 coord: 86..96 score: 68.18 coord: 106..117 score: 61.46
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 160..172 e-value: 1.1 score: 15.1 coord: 86..98 e-value: 3.9 score: 11.9 coord: 137..149 e-value: 1.1 score: 15.1 coord: 108..120 e-value: 0.79 score: 15.8
IPR017956	AT hook, DNA-binding motif	PFAM	PF02178	AT_hook	coord: 87..97 e-value: 1.4 score: 8.9 coord: 108..119 e-value: 0.11 score: 12.4 coord: 160..170 e-value: 0.15 score: 11.9 coord: 137..145 e-value: 1.0 score: 9.4
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 9..75 e-value: 2.8E-22 score: 90.0
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 13..73 e-value: 2.5E-9 score: 37.3
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 11..80 score: 21.829
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 6..80 e-value: 2.2E-10 score: 42.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..180
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 4..179
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF49	SUBFAMILY NOT NAMED	coord: 4..179
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 8..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020191.2	Csa3G284020	Cucumber (Chinese Long) v2	cumedB239
MELO3C020191.2	CSPI03G20830	Wild cucumber (PI 183967)	cpimedB240
MELO3C020191.2	Cucsa.031270	Cucumber (Gy14) v1	cgymedB003
MELO3C020191.2	CmoCh14G008380	Cucurbita moschata (Rifu)	cmomedB259
MELO3C020191.2	Lsi05G003580	Bottle gourd (USVL1VR-Ls)	lsimedB406
MELO3C020191.2	Cp4.1LG03g05980	Cucurbita pepo (Zucchini)	cpemedB692
MELO3C020191.2	CsGy3G020430	Cucumber (Gy14) v2	cgybmedB216
MELO3C020191.2	Cla013219	Watermelon (97103) v1	medwmB462
MELO3C020191.2	ClCG05G011490	Watermelon (Charleston Gray)	medwcgB431
MELO3C020191.2	Cla97C05G093550	Watermelon (97103) v2	medwmbB437
MELO3C020191.2	Bhi01G001494	Wax gourd	medwgoB540
MELO3C020191.2	CsaV3_3G020800	Cucumber (Chinese Long) v3	cucmedB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020191.2	Watermelon (97103) v2	medwmbB424
MELO3C020191.2	Wax gourd	medwgoB546
MELO3C020191.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C020191.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C020191.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C020191.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C020191.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C020191.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C020191.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C020191.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C020191.2	Watermelon (97103) v1	medwmB448
MELO3C020191.2	Silver-seed gourd	carmedB0489