CmoCh14G008380 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G008380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Winged-helix DNA-binding transcription factor family protein, putative isoform 1
Location	Cmo_Chr14 : 4363609 .. 4365290 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGTGCTCAAATCAAACAGTTACAGAGCAAAATTTCGTTCGAACAGCAGTAGTAGGTTCCTCTCTCTCTATCTCTAGCTGCTTTCGGAGTGACTCTTCACCTTCTTTCTCTGTTGTCTTCACGGAAATTAAAGCTTCTGTTTCACTCTTCAATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCGTTTTCCTCTCTATTTCCCGCAATTTCTGATATTCATCAACCAAAAATGATGATATGTTCTGTTTTTTCTCTCTTAATTTTTTGCTCCTCTTCGTCTCACTACCTCTAATTTGTTGAATCTATTATGGATTTGTGTGTTAATCTGTTCTTGAATTAGGGTTTCTTCTGATTTTGTGTCTTGTTTACTGAATTTTGTTGTTCTCTGGTGATTTGGTTAACAGGAGAAAATCCTTGTTTCCTTGTGTTTTCTTGCATTTTCTTCTCTAATCTGAGCGTTTGTTTTTCGGAAAAAACATGAAACGTTGATTATTCATCGGAGATTTTTCATTTCTTTAGCTCTTGTTAGAGATGACATGAATGTGCTTCTGGTTCACTGCAGTTTCTTCGATGATTTGTTTCTGATCTTATTTTGAATGATTCTTCAGTTCCATCATCCTGAATGAAATGGTTTTGAGGTTTGAATTTTGTTTGAGTCAGAAGAGATTTGAGATTAATGCCATTAACTGAATTTGCTGGAAACAAGTTCATTTGAAATGTGCTTCGATTTGAATTCTCTTGAAATGCTGAGAAAGAAGAATCCTGATTGATTTGGCTATCAAGTTTCAATTTAGATCTGCGAATCATTGAAGCTGATAAAAGTGGATCATGAAAATGAAAGGAAAAGGTTGAATTGAAACACCATTTTTGAACGAGGGGCGTTTTAAATGTTGCAGATGATATTTAGGGCTATTGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCAAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCGCCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACAGAAGTTAGCGTTCAACAATAGATTGTTGCAGTGCAGTGTTAATTGGTAGTATCTTGACTCTTTCTCTATCTCACTCGTATCTCTCTCTCTCTTTGTTGCTGTGTGGGGAGTTGTAGTTGTAGTGTTAGTTTTAGTTTGATGTGGGTGTGGGTGTAATTCATGTAAAATGTGTAGTGGTTTGTGAGTCTCTGTTGCTTTCTAATTTACGAAGTGAACATTGACCTGTGCTAATCATAATTTGTTCAGTGTTTCAATCCTTAAACATCTTTATTACTTCA

mRNA sequence

TCTGTGCTCAAATCAAACAGTTACAGAGCAAAATTTCGTTCGAACAGCAGTAGTAGGTTCCTCTCTCTCTATCTCTAGCTGCTTTCGGAGTGACTCTTCACCTTCTTTCTCTGTTGTCTTCACGGAAATTAAAGCTTCTGTTTCACTCTTCAATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCAAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCGCCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACAGAAGTTAGCGTTCAACAATAGATTGTTGCAGTGCAGTGTTAATTGGTAGTATCTTGACTCTTTCTCTATCTCACTCGTATCTCTCTCTCTCTTTGTTGCTGTGTGGGGAGTTGTAGTTGTAGTGTTAGTTTTAGTTTGATGTGGGTGTGGGTGTAATTCATGTAAAATGTGTAGTGGTTTGTGAGTCTCTGTTGCTTTCTAATTTACGAAGTGAACATTGACCTGTGCTAATCATAATTTGTTCAGTGTTTCAATCCTTAAACATCTTTATTACTTCA

Coding sequence (CDS)

ATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCAAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCGCCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACAGAAGTTAGCGTTCAACAATAG

Homology

[Close]

BLAST of CmoCh14G008380 vs. Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.9e-57
Identity = 125/183 (68.31%), Postives = 141/183 (77.05%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPD--ATVLGSHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           N MK SGEL F +NNYMK DP APP+RGRGRPPK K PLPPG+V+SPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPR-PATPPAPPVPSGRPRGRPPKVKGPLTEV 180
           PPK PK       K + G+G+PRGRP+K PR PA      V SGRPRGRPPKVK  LTEV
Sbjct: 121 PPKSPK------AKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEV 175

Query: 181 SVQ 183
           SV+
Sbjct: 181 SVE 175

[Close]

BLAST of CmoCh14G008380 vs. Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.0e-45
Identity = 106/159 (66.67%), Postives = 120/159 (75.47%), Query Frame = 1


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SGEL F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSSGTGKPRG 144
           P+RGRGRPPK KVPLPPG+V+SPP+PRGRPPKDPNAPPK PK       K +  TG+PRG
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPK------AKATPATGRPRG 120

Query: 145 RPRKFPR-PATPPAPPVPSGRPRGRPPKVKGPLTEVSVQ 183
           RP+K  R PA P    V +GRPRGRPPKVK  LTEVSV+
Sbjct: 121 RPKKVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSVE 151

[Close]

BLAST of CmoCh14G008380 vs. Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-32
Identity = 89/174 (51.15%), Postives = 110/174 (63.22%), Query Frame = 1


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKLKV----PLPPGSVLSPPKPRGRPPKDPNAPPKPPK 130
             KNNYMK DP APP+RGRGRPPK K          +V++       PP+    PPKP  
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKD 141

Query: 131 PPKPVQMKVSSGTGKPRGRPRKFPRPAT-------PPAPPVPSGRPRGRPPKVK 174
           P +P Q KV +G+G+PRGRP K PR  +       P A      R RGRPPKVK
Sbjct: 142 PSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of CmoCh14G008380 vs. Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.6e-32
Identity = 93/186 (50.00%), Postives = 108/186 (58.06%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGELVFWKNNYMKRD-PTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPN 120
             MK SGELVF KNNY +   P APP+RGRGRPPK + P  P      P   GR      
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGR---GRG 120

Query: 121 APPKPPKPPKPVQMKVSSGTGKPRGRPRK--------FPRPATPPAP----PVPSGRPRG 174
            PPK   P +    + ++G  KPRGRP K         P P+  PAP      P  R RG
Sbjct: 121 RPPKAKSPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRG 180

[Close]

BLAST of CmoCh14G008380 vs. TrEMBL
Match: A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.8e-82
Identity = 164/183 (89.62%), Postives = 169/183 (92.35%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
              PPKPPKPVQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 ---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVS 180

Query: 181 VQQ 184
           VQQ
Sbjct: 181 VQQ 180

[Close]

BLAST of CmoCh14G008380 vs. TrEMBL
Match: Q42461_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.0e-64
Identity = 136/183 (74.32%), Postives = 151/183 (82.51%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEM+ +A++ALN  +GSNKS ISKYIESTYG LP GH++LL HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           N MK SGELVF KNNYMK DP APP+RGRGRPPK KVPLPPG+VLSPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPR-PATPPAPPVPSGRPRGRPPKVKGPLTEV 180
           PPK PK       KVS+G+G+PRGRP+K  R PA     PVPSGRPRGRPPKVK  LTEV
Sbjct: 121 PPKSPK------TKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEV 177

Query: 181 SVQ 183
           SV+
Sbjct: 181 SVE 177

[Close]

BLAST of CmoCh14G008380 vs. TrEMBL
Match: Q42492_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.5e-62
Identity = 135/183 (73.77%), Postives = 149/183 (81.42%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPY EMI +A+++LN  NGSNKS ISKYIEST G LP GHS+LL HHL
Sbjct: 1   MATEEVNKPPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           N MK SGELVF KNNYMK DPT+PP+RGRGRPPK KVPLPPG+VLSPP+PRGRPPKDPNA
Sbjct: 61  NKMKESGELVFLKNNYMKPDPTSPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAP-PVPSGRPRGRPPKVKGPLTEV 180
           P K PK       KVS+G+G+PRGRP+K  R A   AP P PSGRPRGRPPKVK  LTEV
Sbjct: 121 PTKSPK------AKVSTGSGRPRGRPKKIARSAAVVAPTPGPSGRPRGRPPKVKPQLTEV 177

Query: 181 SVQ 183
           SV+
Sbjct: 181 SVE 177

[Close]

BLAST of CmoCh14G008380 vs. TrEMBL
Match: A0A067KDV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13448 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60
Identity = 135/194 (69.59%), Postives = 151/194 (77.84%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAAEEVN+PPSLPPYPEMI  AIEALN  NGSNK++ISKYIES YG LP  H++LLTHHL
Sbjct: 1   MAAEEVNRPPSLPPYPEMILAAIEALNEQNGSNKTSISKYIESKYGELPASHTTLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           N MK +GELVFWKNNYMK DP+APPRRGRGRPPK K P PPG++L+P +PRGRPPKDPNA
Sbjct: 61  NRMKDTGELVFWKNNYMKPDPSAPPRRGRGRPPKPKDPSPPGAILAPARPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRP-------ATPPAPPVP----SGRPRGRP 180
           PPKP K     Q   S+G+GKPRGRPRK  RP       +T  A  VP    +GRPRGRP
Sbjct: 121 PPKPMK-----QKVTSTGSGKPRGRPRKMARPTGGMSGTSTTTATTVPMATGTGRPRGRP 180

Query: 181 PKVKGP-LTEVSVQ 183
           PKVK P +TEVSVQ
Sbjct: 181 PKVKNPSVTEVSVQ 189

[Close]

BLAST of CmoCh14G008380 vs. TrEMBL
Match: M5XB09_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.4e-59
Identity = 133/189 (70.37%), Postives = 147/189 (77.78%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKP SLPPYPEMI +AIEALN  NGSNKS+ISK+IESTYG+LP GH+SLL+HHL
Sbjct: 1   MATEEVNKPLSLPPYPEMILKAIEALNEKNGSNKSSISKFIESTYGDLPAGHNSLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           N MK SGELVFWKNNY K DP APPRRGRGRPPK K  LPP +VL P +PRGRPPKDPNA
Sbjct: 61  NKMKDSGELVFWKNNYTKPDPNAPPRRGRGRPPKPKDSLPPDAVLGPTRPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRP-----ATPPAPPVPSGRPRGRPPKVKGP 180
           PPKPPK      +KVSSG+GKPRGRPRK  +P      +        GRPRGRPPKVK  
Sbjct: 121 PPKPPK------VKVSSGSGKPRGRPRKMAKPTGGLSGSATVTDTMPGRPRGRPPKVKDS 180

Query: 181 LT-EVSVQQ 184
           L+ EVSV+Q
Sbjct: 181 LSAEVSVEQ 183

[Close]

BLAST of CmoCh14G008380 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-33
Identity = 89/174 (51.15%), Postives = 110/174 (63.22%), Query Frame = 1


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKLKV----PLPPGSVLSPPKPRGRPPKDPNAPPKPPK 130
             KNNYMK DP APP+RGRGRPPK K          +V++       PP+    PPKP  
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKD 141

Query: 131 PPKPVQMKVSSGTGKPRGRPRKFPRPAT-------PPAPPVPSGRPRGRPPKVK 174
           P +P Q KV +G+G+PRGRP K PR  +       P A      R RGRPPKVK
Sbjct: 142 PSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of CmoCh14G008380 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-11
Identity = 69/197 (35.03%), Postives = 92/197 (46.70%), Query Frame = 1


Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNYMKRDPTAPP--------RRGRGRP-PKLKV-------PLPPGSVLSPPK-PRGRPP 132
           K +Y     + PP           +G   P+ ++       P+  GS   P K  RGRPP
Sbjct: 126 KKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPP 185

Query: 133 KDPNAPPKPPKPPKPVQMKVSSGTGKPRGRP----RKFPRPATPPAPPVPS-----GRPR 182
           K     PKP   P+P+Q    +   +  G+P    ++   P   P P   S     GRPR
Sbjct: 186 K-----PKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPR 245

[Close]

BLAST of CmoCh14G008380 vs. TAIR10
Match: AT1G48620.1 (AT1G48620.1 high mobility group A5)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-09
Identity = 54/148 (36.49%), Postives = 65/148 (43.92%), Query Frame = 1


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           S PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL  +K SG LV
Sbjct: 74  SHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILV 133

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKP 130
             K +Y       PP              PP SV    +P   P  D       P P   
Sbjct: 134 MVKKSYKLASTPPPP--------------PPTSVAPSLEP---PRSDFIVNENQPLPDPV 193

Query: 131 VQMKVSSGTGKPRGRPRKFPRPATPPAP 159
           +         + RGRP K       P P
Sbjct: 194 LASSTPQTIKRGRGRPPKAKPDVVQPQP 204

[Close]

BLAST of CmoCh14G008380 vs. TAIR10
Match: AT5G08780.1 (AT5G08780.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-08
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1


Query: 6   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKA 65
           +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGELVFWKNN 76
             E++   NN
Sbjct: 109 KREILCDCNN 118

[Close]

BLAST of CmoCh14G008380 vs. NCBI nr
Match: gi|659114297|ref|XP_008456999.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis melo])

HSP 1 Score: 315.8 bits (808), Expect = 4.8e-83
Identity = 165/183 (90.16%), Postives = 169/183 (92.35%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  S +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
              PPKPPKPVQMKVSSGTGKPRGRPRKFP+ AT PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 ---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVS 180

Query: 181 VQQ 184
           VQQ
Sbjct: 181 VQQ 180

[Close]

BLAST of CmoCh14G008380 vs. NCBI nr
Match: gi|449456239|ref|XP_004145857.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 4.1e-82
Identity = 164/183 (89.62%), Postives = 169/183 (92.35%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180
              PPKPPKPVQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVS
Sbjct: 121 ---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVS 180

Query: 181 VQQ 184
           VQQ
Sbjct: 181 VQQ 180

[Close]

BLAST of CmoCh14G008380 vs. NCBI nr
Match: gi|1181589|dbj|BAA11766.1| (high mobility group protein [Canavalia gladiata])

HSP 1 Score: 253.4 bits (646), Expect = 2.9e-64
Identity = 136/183 (74.32%), Postives = 151/183 (82.51%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEM+ +A++ALN  +GSNKS ISKYIESTYG LP GH++LL HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           N MK SGELVF KNNYMK DP APP+RGRGRPPK KVPLPPG+VLSPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPR-PATPPAPPVPSGRPRGRPPKVKGPLTEV 180
           PPK PK       KVS+G+G+PRGRP+K  R PA     PVPSGRPRGRPPKVK  LTEV
Sbjct: 121 PPKSPK------TKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEV 177

Query: 181 SVQ 183
           SV+
Sbjct: 181 SVE 177

[Close]

BLAST of CmoCh14G008380 vs. NCBI nr
Match: gi|1181591|dbj|BAA11767.1| (high mobility group protein [Canavalia gladiata])

HSP 1 Score: 245.4 bits (625), Expect = 8.0e-62
Identity = 135/183 (73.77%), Postives = 149/183 (81.42%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPY EMI +A+++LN  NGSNKS ISKYIEST G LP GHS+LL HHL
Sbjct: 1   MATEEVNKPPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           N MK SGELVF KNNYMK DPT+PP+RGRGRPPK KVPLPPG+VLSPP+PRGRPPKDPNA
Sbjct: 61  NKMKESGELVFLKNNYMKPDPTSPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAP-PVPSGRPRGRPPKVKGPLTEV 180
           P K PK       KVS+G+G+PRGRP+K  R A   AP P PSGRPRGRPPKVK  LTEV
Sbjct: 121 PTKSPK------AKVSTGSGRPRGRPKKIARSAAVVAPTPGPSGRPRGRPPKVKPQLTEV 177

Query: 181 SVQ 183
           SV+
Sbjct: 181 SVE 177

[Close]

BLAST of CmoCh14G008380 vs. NCBI nr
Match: gi|1021550172|ref|XP_016166478.1| (PREDICTED: HMG-Y-related protein A-like [Arachis ipaensis])

HSP 1 Score: 240.4 bits (612), Expect = 2.6e-60
Identity = 131/186 (70.43%), Postives = 145/186 (77.96%), Query Frame = 1


Query: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEMI +A++ LN  NGSNKS IS+YIESTYG LP GH++LL HHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIMKALDGLNEPNGSNKSAISRYIESTYGELPEGHTTLLNHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120
           N MK SGELVF KNNYMK D +APP+RGRGRPPK K PLPPG+VLSPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELVFLKNNYMKPDASAPPKRGRGRPPKAKEPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSG----RPRGRPPKVKGPL 180
           PPK PK       K S G+G+PRGRP+K PR A PP P   S     R RGRPPKVK  L
Sbjct: 121 PPKSPK------AKPSGGSGRPRGRPKKIPRTAAPPPPSTLSAPSTPRGRGRPPKVKPQL 180

Query: 181 TEVSVQ 183
           TEVSV+
Sbjct: 181 TEVSVE 180

The following BLAST results are available for this feature:

BLAST of CmoCh14G008380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGYA_SOYBN	5.9e-57	68.31	HMG-Y-related protein A OS=Glycine max PE=2 SV=1	[more]
HMGYB_SOYBN	4.0e-45	66.67	HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1	[more]
HMGYA_ARATH	2.3e-32	51.15	HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1	[more]
HMGYA_MAIZE	6.6e-32	50.00	HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1	[more]

BLAST of CmoCh14G008380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCH9_CUCSA	2.8e-82	89.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1	[more]
Q42461_CANGL	2.0e-64	74.32	High mobility group protein OS=Canavalia gladiata PE=2 SV=1	[more]
Q42492_CANGL	5.5e-62	73.77	High mobility group protein OS=Canavalia gladiata PE=2 SV=1	[more]
A0A067KDV9_JATCU	3.0e-60	69.59	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13448 PE=3 SV=1	[more]
M5XB09_PRUPE	4.4e-59	70.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1	[more]

BLAST of CmoCh14G008380 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	1.3e-33	51.15	high mobility group A	[more]
AT3G18035.1	6.8e-11	35.03	winged-helix DNA-binding transcription factor family protein	[more]
AT1G48620.1	2.9e-09	36.49	high mobility group A5	[more]
AT5G08780.1	1.4e-08	40.00	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of CmoCh14G008380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114297\|ref\|XP_008456999.1\|	4.8e-83	90.16	PREDICTED: HMG-Y-related protein A-like [Cucumis melo]	[more]
gi\|449456239\|ref\|XP_004145857.1\|	4.1e-82	89.62	PREDICTED: HMG-Y-related protein A-like [Cucumis sativus]	[more]
gi\|1181589\|dbj\|BAA11766.1\|	2.9e-64	74.32	high mobility group protein [Canavalia gladiata]	[more]
gi\|1181591\|dbj\|BAA11767.1\|	8.0e-62	73.77	high mobility group protein [Canavalia gladiata]	[more]
gi\|1021550172\|ref\|XP_016166478.1\|	2.6e-60	70.43	PREDICTED: HMG-Y-related protein A-like [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000116	HMGA
IPR005818	Histone_H1/H5_H15
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR017956	AT_hook_DNA-bd_motif

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000785	chromatin
GO:0000786	nucleosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006334	nucleosome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G008380.1	CmoCh14G008380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 152..171 score: 2.0E-5coord: 138..149 score: 2.0E-5coord: 106..118 score: 2.
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 13..73 score: 2.
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 9..75 score: 2.5
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 11..80 score: 21
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 8..78 score: 1.3
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 8..87 score: 5.99
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 161..171 score: 3.4E-15coord: 106..117 score: 3.4E-15coord: 86..96 score: 3.4
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 108..120 score: 0.79coord: 140..152 score: 10.0coord: 163..175 score: 3.5coord: 86..98 score:
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 1..173 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G008380	CmaCh14G008230	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G008380	CmaCh01G003760	Cucurbita maxima (Rimu)	cmacmoB462
CmoCh14G008380	Cla013219	Watermelon (97103) v1	cmowmB232
CmoCh14G008380	MELO3C020191	Melon (DHL92) v3.5.1	cmomeB229
CmoCh14G008380	ClCG05G011490	Watermelon (Charleston Gray)	cmowcgB220
CmoCh14G008380	Lsi05G003580	Bottle gourd (USVL1VR-Ls)	cmolsiB237
CmoCh14G008380	Cp4.1LG03g05980	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G008380	Cp4.1LG02g16890	Cucurbita pepo (Zucchini)	cmocpeB241
CmoCh14G008380	MELO3C020191.2	Melon (DHL92) v3.6.1	cmomedB259
CmoCh14G008380	Cla97C05G093550	Watermelon (97103) v2	cmowmbB244
CmoCh14G008380	Bhi01G001494	Wax gourd	cmowgoB0332
CmoCh14G008380	Carg22258	Silver-seed gourd	carcmoB0650
CmoCh14G008380	Carg07460	Silver-seed gourd	carcmoB1031

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G008380	CmoCh01G003930	Cucurbita moschata (Rifu)	cmocmoB203

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G008380	Wax gourd	cmowgoB0307
CmoCh14G008380	Wild cucumber (PI 183967)	cmocpiB232
CmoCh14G008380	Cucumber (Chinese Long) v2	cmocuB229
CmoCh14G008380	Melon (DHL92) v3.5.1	cmomeB231
CmoCh14G008380	Cucumber (Gy14) v2	cgybcmoB281
CmoCh14G008380	Melon (DHL92) v3.6.1	cmomedB261
CmoCh14G008380	Cucumber (Chinese Long) v3	cmocucB0272