CmaCh14G008230 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATCTGTGCTCAAATCAAACAGTTACAGAGCAAAATTTCGTTCGAACAGCAGTAGTAGCTTCCTCTCTCTCTATCTCTAGCTGCTTTCGGAGTGACTCTTCACCTTCTTTCTCTGTTGGCTTCACAGAAATTAAAGCTTCTTTTTCAATCTTCAATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCGTTTTCCTCTCTATCTCCCGCAATTTCTGATATCCATCAACGAAAAATGATGATATGTTCTGTTTTTTCTCTCTTAATTTTTACTCGTCTTCGTCTCACTGCCTCCTATTTGTTGAATCTATTATGGATTTGTGTGTTAATCTGTTCTTGAATTAGGGTTTCTTCTGATTTTGTGTCTTGTTTACTGAATTTTGTTGTTCTCTGGTGATTTGGTTAACAGGAGAAAATCCTTGTTTCCTTGTGTTTTCTTGCATTTTCTTCTCTAATCTGAGCGTTTGTTTTTCGAAAAAAACACGAAACGTTGATTATTCACCGGAGTTTTTTTCATTTTCTTTAGCTCTTGTTAGAGATGAGATGAATGTGCTTCTGGTTGACTGCAGTTTCTTCAATGATGTGTTTCTGATCTTATTTTGAATGATTCTTCAGTTCCATCATCCTTAATGAAATGGTTTTGAGTTTTGAATTTTGTTTGAATCAGAAGAGATTTGAGATTAATGCCATTTAACTGAATTTGCTGGAAACAAGTTCATTTGAAATGTGCTTCGATTTGAATTCTCTTGAAGTGCTGAGAAAGAAGAATCCTGATTGATTTGGCTATCAAGTTTCAATTTAGATCTGCAAATCATTGAAGCTGATAAAAGTGGATCATGAAAATTAAAGGAAAAGGTTGAAATTGAAACACCATTTTTGAACGAGGGGCGTTTTAAATGTTGCAGATGATATTTAGGGCTATCGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCAAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCCCCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACTGAAGTTAGCGTTCAACAATAGATTGTTGCAGTGCCGTGTTAATTGGTAGTATCTTGACTCTTCCTCTATCTCACTCGTATCTATCTCTCTCTTTGTTGCTGTGTGGGGAGTTGTAGTTGTAGTGTTAGTTTTAGTTTGATGTGGGTGTGGGTGTAATTCATGTAAAATGTGTAGTGGTTTGTGAGTCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTGTTCAGTGTTTCAATCCTTAAAACATCTTTATTTCTTCAAA AATCTGTGCTCAAATCAAACAGTTACAGAGCAAAATTTCGTTCGAACAGCAGTAGTAGCTTCCTCTCTCTCTATCTCTAGCTGCTTTCGGAGTGACTCTTCACCTTCTTTCTCTGTTGGCTTCACAGAAATTAAAGCTTCTTTTTCAATCTTCAATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATCGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCAAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCCCCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACTGAAGTTAGCGTTCAACAATAGATTGTTGCAGTGCCGTGTTAATTGGTAGTATCTTGACTCTTCCTCTATCTCACTCGTATCTATCTCTCTCTTTGTTGCTGTGTGGGGAGTTGTAGTTGTAGTGTTAGTTTTAGTTTGATGTGGGTGTGGGTGTAATTCATGTAAAATGTGTAGTGGTTTGTGAGTCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGTGCTAATCATAATTTGTTCAGTGTTTCAATCCTTAAAACATCTTTATTTCTTCAAA ATGGCGGCCGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATCGAGGCATTGAATAGTGACAATGGTTCAAACAAATCCACCATATCAAAGTACATTGAATCAACATATGGGAACTTACCAACTGGGCATTCATCTTTGCTAACGCACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCACCTCCCCGGCGGGGACGTGGCAGGCCTCCAAAACTGAAGGTGCCTCTGCCGCCTGGTTCTGTTTTATCCCCGCCGAAGCCAAGAGGCCGCCCGCCTAAGGACCCGAATGCGCCTCCAAAACCTCCCAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCGAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCCCCCCAGCTCCTCCGGTACCGAGTGGGAGGCCCAGAGGTCGACCTCCCAAGGTGAAGGGTCCATTGACTGAAGTTAGCGTTCAACAATAG MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVSVQQ
BLAST of CmaCh14G008230 vs. Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 5.9e-57 Identity = 125/183 (68.31%), Postives = 141/183 (77.05%), Query Frame = 1
BLAST of CmaCh14G008230 vs. Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 4.0e-45 Identity = 106/159 (66.67%), Postives = 120/159 (75.47%), Query Frame = 1
BLAST of CmaCh14G008230 vs. Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 2.3e-32 Identity = 89/174 (51.15%), Postives = 110/174 (63.22%), Query Frame = 1
BLAST of CmaCh14G008230 vs. Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 6.6e-32 Identity = 93/186 (50.00%), Postives = 108/186 (58.06%), Query Frame = 1
BLAST of CmaCh14G008230 vs. TrEMBL
Match: A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 2.8e-82 Identity = 164/183 (89.62%), Postives = 169/183 (92.35%), Query Frame = 1
BLAST of CmaCh14G008230 vs. TrEMBL
Match: Q42461_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 2.0e-64 Identity = 136/183 (74.32%), Postives = 151/183 (82.51%), Query Frame = 1
BLAST of CmaCh14G008230 vs. TrEMBL
Match: Q42492_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 5.5e-62 Identity = 135/183 (73.77%), Postives = 149/183 (81.42%), Query Frame = 1
BLAST of CmaCh14G008230 vs. TrEMBL
Match: A0A067KDV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13448 PE=3 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60 Identity = 135/194 (69.59%), Postives = 151/194 (77.84%), Query Frame = 1
BLAST of CmaCh14G008230 vs. TrEMBL
Match: M5XB09_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 4.4e-59 Identity = 133/189 (70.37%), Postives = 147/189 (77.78%), Query Frame = 1
BLAST of CmaCh14G008230 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A) HSP 1 Score: 140.2 bits (352), Expect = 1.3e-33 Identity = 89/174 (51.15%), Postives = 110/174 (63.22%), Query Frame = 1
BLAST of CmaCh14G008230 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein) HSP 1 Score: 64.7 bits (156), Expect = 6.8e-11 Identity = 69/197 (35.03%), Postives = 92/197 (46.70%), Query Frame = 1
BLAST of CmaCh14G008230 vs. TAIR10
Match: AT1G48620.1 (AT1G48620.1 high mobility group A5) HSP 1 Score: 59.3 bits (142), Expect = 2.9e-09 Identity = 54/148 (36.49%), Postives = 65/148 (43.92%), Query Frame = 1
BLAST of CmaCh14G008230 vs. TAIR10
Match: AT5G08780.1 (AT5G08780.1 winged-helix DNA-binding transcription factor family protein) HSP 1 Score: 57.0 bits (136), Expect = 1.4e-08 Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
BLAST of CmaCh14G008230 vs. NCBI nr
Match: gi|659114297|ref|XP_008456999.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis melo]) HSP 1 Score: 315.8 bits (808), Expect = 4.8e-83 Identity = 165/183 (90.16%), Postives = 169/183 (92.35%), Query Frame = 1
BLAST of CmaCh14G008230 vs. NCBI nr
Match: gi|449456239|ref|XP_004145857.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus]) HSP 1 Score: 312.8 bits (800), Expect = 4.1e-82 Identity = 164/183 (89.62%), Postives = 169/183 (92.35%), Query Frame = 1
BLAST of CmaCh14G008230 vs. NCBI nr
Match: gi|1181589|dbj|BAA11766.1| (high mobility group protein [Canavalia gladiata]) HSP 1 Score: 253.4 bits (646), Expect = 2.9e-64 Identity = 136/183 (74.32%), Postives = 151/183 (82.51%), Query Frame = 1
BLAST of CmaCh14G008230 vs. NCBI nr
Match: gi|1181591|dbj|BAA11767.1| (high mobility group protein [Canavalia gladiata]) HSP 1 Score: 245.4 bits (625), Expect = 8.0e-62 Identity = 135/183 (73.77%), Postives = 149/183 (81.42%), Query Frame = 1
BLAST of CmaCh14G008230 vs. NCBI nr
Match: gi|1021550172|ref|XP_016166478.1| (PREDICTED: HMG-Y-related protein A-like [Arachis ipaensis]) HSP 1 Score: 240.4 bits (612), Expect = 2.6e-60 Identity = 131/186 (70.43%), Postives = 145/186 (77.96%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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