Carg07460 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07460
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	HMG-Y-related protein A-like
Location	Cucurbita_argyrosperma_scaffold_019 : 986627 .. 987975 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTGGTTCCTCTCTCTATCTCTACCAGCTGCTTTCTGTAGGCTTCAGGGAAATAAAAGCTTTGTTTTTCAATTTCAATGGCGACTGAAGAGCTTCCTCCTTACCCTCAGGTTCATTCATGATTTGTTCTTCATTTTGTTGCTTTTTTTTCTCTTAATTCTTCGTGGGTTTCGTCCTACTACCTTTAATTTCTTGAATCTGCTTCTGGGTTTGTGCGTTTGCACCTTAATTTGTTCTTGAATCAGAGTTTCTCGTGATTCTTTTTGTTGTTGTTCTGTGATGATTTGATGAACAGGGGAAATTTCTACTTTCGTTTTTGGATTTGATTTGAAATGATTAGAGATTTGATGTTAATTTTTTGAAGATTTGTAGATGTTAGATCTGTTCTTAAGTTTCTTTCTAGATCTACAAATCATGAAAGGAAAAAGGATGAATCAAAACACCATTTGTGATGGAAATGCTTTGAATATTGCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGACAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCGACATATGAGAACTTACCAACTGGGCACTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGCGGAGAGCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCCCGGCGGGGGCGTGGCAGGCCTCCCAAGCCAAAGGAGCATAGGGACTCCCCCATTGCAGCAAAGGCAGTGAAGATGAAGGTATCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGTCAGTGACCACAACAGCTCTGCCACCACCGAGCGGGAGGCCCAGAGGTCGACCGCCTAAGGTGAAGGCTCTGTTGACTGAAGTTAGCGTTCTATAATAGATAGGTTGTTGCAGTGTGCAGTGCAGTGTTAATTGGTAGTGCCATGACTCGCTCTCTCTGTTGCTGTGTGAGCTGTTAGAGTTGTAATTGTTGTAAAATGCGGTGGTGTGGTTTGTGAGGGCTCACGTTCAAACACGACACATCCACCGATAGATATTGTCTGTTTTAGCTTGATATGTATAGCCGTCTCATGGTTTTAAAATCGCGTATGATAGGGAGAGATTTCAGTACTATTACAAGGAATGCTTCGTACCCCTTTCTAACTCATTTGAGATCTCATAATCCACCTTCTTGGAGGACTAGAGTCCCTGTTGACACATTGTTCAGTGCTTGACTCTAACACCATTTGTAACCGTCCAAACTTGTCATTAGCGGATATTGTTTGCTTTAGCTTGTTACGTATTACCATAGTCTTGCGATTTTAAAATGCATTTATTATGG

mRNA sequence

AATTTGGTTCCTCTCTCTATCTCTACCAGCTGCTTTCTGTAGGCTTCAGGGAAATAAAAGCTTTGTTTTTCAATTTCAATGGCGACTGAAGAGCTTCCTCCTTACCCTCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGACAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCGACATATGAGAACTTACCAACTGGGCACTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGCGGAGAGCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCCCGGCGGGGGCGTGGCAGGCCTCCCAAGCCAAAGGAGCATAGGGACTCCCCCATTGCAGCAAAGGCAGTGAAGATGAAGGTATCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGTCAGTGACCACAACAGCTCTGCCACCACCGAGCGGGAGGCCCAGAGGTCGACCGCCTAAGGTGAAGGCTCTGTTGACTGAAGTTAGCGTTCTATAATAGATAGGTTGTTGCAGTGTGCAGTGCAGTGTTAATTGGTAGTGCCATGACTCGCTCTCTCTGTTGCTGTGTGAGCTGTTAGAGTTGTAATTGTTGTAAAATGCGGTGGTGTGGTTTGTGAGGGCTCACGTTCAAACACGACACATCCACCGATAGATATTGTCTGTTTTAGCTTGATATGTATAGCCGTCTCATGGTTTTAAAATCGCGTATGATAGGGAGAGATTTCAGTACTATTACAAGGAATGCTTCGTACCCCTTTCTAACTCATTTGAGATCTCATAATCCACCTTCTTGGAGGACTAGAGTCCCTGTTGACACATTGTTCAGTGCTTGACTCTAACACCATTTGTAACCGTCCAAACTTGTCATTAGCGGATATTGTTTGCTTTAGCTTGTTACGTATTACCATAGTCTTGCGATTTTAAAATGCATTTATTATGG

Coding sequence (CDS)

ATGGCGACTGAAGAGCTTCCTCCTTACCCTCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGACAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCGACATATGAGAACTTACCAACTGGGCACTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGCGGAGAGCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCCCGGCGGGGGCGTGGCAGGCCTCCCAAGCCAAAGGAGCATAGGGACTCCCCCATTGCAGCAAAGGCAGTGAAGATGAAGGTATCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGTCAGTGACCACAACAGCTCTGCCACCACCGAGCGGGAGGCCCAGAGGTCGACCGCCTAAGGTGAAGGCTCTGTTGACTGAAGTTAGCGTTCTATAA

Protein sequence

MATEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEHRDSPIAAKAVKMKVSSGTGKPRGRPRKLPQSVTTTALPPPSGRPRGRPPKVKALLTEVSVL

Homology

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BLAST of Carg07460 vs. NCBI nr
Match: XP_022948333.1 (HMG-Y-related protein A-like [Cucurbita moschata])

HSP 1 Score: 258.1 bits (658), Expect = 1.9e-65
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MATEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKAS 60
           MATEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKAS
Sbjct: 1   MATEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKAS 60

Query: 61  GELVFWKNNYMKRDPSAAPRRGRGRPPKPKEHRDSPIAAKAVKMKVSSGTGKPRGRPRKL 120
           GELVFWKNNYMKRDPSAAPRRGRGRPPKPKE R+ PIAAKAVKMKVSSGTGKPRGRPRKL
Sbjct: 61  GELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRGRPRKL 120

Query: 121 PQSVTTTALPXXXXXXXXXXXXXXXXLTEVSVL 154
           PQSVTTTALPXXXXXXXXXXXXXXXXLTEVSVL
Sbjct: 121 PQSVTTTALPXXXXXXXXXXXXXXXXLTEVSVL 153

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BLAST of Carg07460 vs. NCBI nr
Match: XP_023525091.1 (HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-61
Identity = 140/153 (91.50%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MATEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKAS 60
           MATEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKAS
Sbjct: 1   MATEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKAS 60

Query: 61  GELVFWKNNYMKRDPSAAPRRGRGRPPKPKEHRDSPIAAKAVKMKVSSGTGKPRGRPRKL 120
           GELVFWKNNYMKRDPSAAPRRGRGRPPKPKE R+ PIAAKAVKMKVSSGTGKPR   RKL
Sbjct: 61  GELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRXXXRKL 120

Query: 121 PQSVTTTALPXXXXXXXXXXXXXXXXLTEVSVL 154
           PQ V TTALP XXXXXXXXXXXX   LTEVSV+
Sbjct: 121 PQPVATTALPPXXXXXXXXXXXXKALLTEVSVI 153

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BLAST of Carg07460 vs. NCBI nr
Match: XP_022998677.1 (HMG-Y-related protein A-like [Cucurbita maxima])

HSP 1 Score: 241.1 bits (614), Expect = 2.4e-60
Identity = 141/153 (92.16%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MATEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKAS 60
           MATEELPPYPQMILRAIEALNS NGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKAS
Sbjct: 1   MATEELPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKAS 60

Query: 61  GELVFWKNNYMKRDPSAAPRRGRGRPPKPKEHRDSPIAAKAVKMKVSSGTGKPRGRPRKL 120
           GELVFWKNNYMKRDPSAAPRRGRGRPPKPKE R+ P A KAVKMKVSSGTGKPR   RKL
Sbjct: 61  GELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREPPNATKAVKMKVSSGTGKPRXXXRKL 120

Query: 121 PQSVTTTALPXXXXXXXXXXXXXXXXLTEVSVL 154
           PQ VTTTALP XXXXXXXXXXXXXX LTEVSVL
Sbjct: 121 PQPVTTTALPPXXXXXXXXXXXXXXLLTEVSVL 153

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BLAST of Carg07460 vs. NCBI nr
Match: XP_022143283.1 (HMG-Y-related protein A-like [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 4.9e-37
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 6   LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
           LPPYP+MI RAIEALNSDNGSNKSTISKYIESTY NLPTGHSSLLT HLNMMKASGELVF
Sbjct: 12  LPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVF 71

Query: 66  WKNNYMKRDPSAAPRRGRGRPPKPKEHRDSPIAA 100
           WKNNYMKRDP+A PRRGRGRPPKPK    S +A+
Sbjct: 72  WKNNYMKRDPTAPPRRGRGRPPKPKVPLPSNVAS 105

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BLAST of Carg07460 vs. NCBI nr
Match: XP_004145857.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus] >KGN57766.1 hypothetical protein Csa_3G284020 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 5.5e-36
Identity = 84/108 (77.78%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNSDNGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEHRDSPIAAKAV 103
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK K    SP+   +V
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSK----SPLPLSSV 104

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BLAST of Carg07460 vs. TAIR10
Match: AT1G14900.1 (high mobility group A)

HSP 1 Score: 97.8 bits (242), Expect = 6.0e-21
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 6  LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
          LPPYPQMI+ AIE+LN  NG NK+TI+K+IEST + LP  H +LL+ HLN MK +G+L+ 
Sbjct: 23 LPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIM 82

Query: 66 WKNNYMKRDPSA 78
           KNNYMK DP A
Sbjct: 83 VKNNYMKPDPDA 94

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BLAST of Carg07460 vs. TAIR10
Match: AT1G48620.1 (high mobility group A5)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-11
Identity = 50/140 (35.71%), Postives = 65/140 (46.43%), Query Frame = 0


Query: 7   PPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFW 66
           PPY  MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLT HL  +K SG LV  
Sbjct: 76  PPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMV 135

Query: 67  KNNYMKRD-----------PSAAPRRG----RGRPPKPKEHRDSPIAAKAVKMKVSSGTG 126
           K +Y               PS  P R         P P      P+ A +    +  G G
Sbjct: 136 KKSYKXXXXXXXXXXXXVAPSLEPPRSDFIVNENQPLP-----DPVLASSTPQTIKRGRG 195

Query: 127 K-PRGRPRKL-PQSVTTTAL 130
           + P+ +P  + PQ +T   L
Sbjct: 196 RPPKAKPDVVQPQPLTNGKL 210

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BLAST of Carg07460 vs. TAIR10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-11
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 7   PPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFW 66
           PPY +MI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLT HL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 67  KNNYMKRDPSAAP 80
           K +Y     S  P
Sbjct: 126 KKSYKIAGSSTPP 138

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BLAST of Carg07460 vs. TAIR10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-07
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 3   TEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGE 62
           T + P Y  MI  AI  LN + G+++  IS++I+S Y+NLP  H++LL+ HL  +    E
Sbjct: 52  TPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKRE 111

Query: 63  LVFWKNN 70
           ++   NN
Sbjct: 112 ILCDCNN 118

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BLAST of Carg07460 vs. TAIR10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 24/58 (41.38%), Postives = 32/58 (55.17%), Query Frame = 0


Query: 7   PPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELV 65
           P Y +MI  AI  L    GS++  I K+IE   + LP     LL L+L  + ASG+LV
Sbjct: 63  PTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLV 120

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BLAST of Carg07460 vs. Swiss-Prot
Match: sp|Q00423|HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 1  MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
          MATEE      LPPYP+MI++ +EALN  NGSNKS ISKYIE+TY  LP   +++L  HL
Sbjct: 1  MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61 NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPK 91
          N MK SGEL F +NNYMK DP+A P+RGRGRPPKPK
Sbjct: 61 NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPK 94

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BLAST of Carg07460 vs. Swiss-Prot
Match: sp|Q43386|HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-19
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 6  LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
          LPPYPQMI+ AIE+LN  NG NK+TI+K+IEST + LP  H +LL+ HLN MK +G+L+ 
Sbjct: 23 LPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIM 82

Query: 66 WKNNYMKRDPSA 78
           KNNYMK DP A
Sbjct: 83 VKNNYMKPDPDA 94

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BLAST of Carg07460 vs. Swiss-Prot
Match: sp|Q9FYS5|HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-19
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
          MAT+E      +PPYP+MIL AIE L+  +GSNKS ISKYIE  Y +LP  H+SLLT HL
Sbjct: 1  MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61 NMMKASGELVFWKNNYMKRD-PSAAPRRG 83
            MK SGELVF KNNY +   P A P+RG
Sbjct: 61 ARMKESGELVFLKNNYFRAGAPDAPPKRG 89

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BLAST of Carg07460 vs. Swiss-Prot
Match: sp|Q10370|HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.0e-18
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 19 ALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFWKNNYMKRDPSAA 78
          ALN  +GSNKS ISKYIE+TY  LP    ++L  HLN MK SGEL F +NNYMK DP+A 
Sbjct: 1  ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 79 PRRGRGRPPKPK 91
          P+RGRGRPPKPK
Sbjct: 61 PKRGRGRPPKPK 70

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BLAST of Carg07460 vs. Swiss-Prot
Match: sp|P40267|H1_SOLPN (Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.4e-04
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 7   PPYPQMILRAIEALNSDNGSNKSTISKYIESTY-ENLPTGHSSLLTLHLNMMKASGELVF 66
           PPY QMI  A+ ALN   GS+   ++KY+E  + + LP     +L L L    A G+L+ 
Sbjct: 50  PPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIK 109

Query: 67  WKNNY 71
            K +Y
Sbjct: 110 IKASY 114

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BLAST of Carg07460 vs. TrEMBL
Match: tr|A0A0A0LCH9|A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.6e-36
Identity = 84/108 (77.78%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNSDNGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEHRDSPIAAKAV 103
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK K    SP+   +V
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSK----SPLPLSSV 104

[Close]

BLAST of Carg07460 vs. TrEMBL
Match: tr|A0A1S3C432|A0A1S3C432_CUCME (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.7e-36
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
          MAT+E      LPPYP+MI RAIEALNSDNGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61 NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPK 91
          NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK K
Sbjct: 61 NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSK 96

[Close]

BLAST of Carg07460 vs. TrEMBL
Match: tr|A0A2P5EU67|A0A2P5EU67_9ROSA (High mobility group protein HMGA OS=Trema orientalis OX=63057 GN=TorRG33x02_151300 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.0e-35
Identity = 91/148 (61.49%), Postives = 103/148 (69.59%), Query Frame = 0


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MI+RAIEALN +NGSNKS+ISKYIESTY +LP GHS+LL+ HL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEHRDSPIAAKAV------------ 120
           N MK SGELVFWKNNY K DP+A PRRGRGRPPKPK     P+   AV            
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPK----VPLPPGAVLXXXXXXXXXXX 120

[Close]

BLAST of Carg07460 vs. TrEMBL
Match: tr|A0A2P5C3B6|A0A2P5C3B6_PARAD (High mobility group protein HMGA OS=Parasponia andersonii OX=3476 GN=PanWU01x14_187500 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.0e-35
Identity = 91/148 (61.49%), Postives = 103/148 (69.59%), Query Frame = 0


Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MI+RAIEALN +NGSNKS+ISKYIESTY +LP GHS+LL+ HL
Sbjct: 1   MATEEVNKPPSLPPYPEMIIRAIEALNDENGSNKSSISKYIESTYGDLPAGHSALLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEHRDSPIAAKAV------------ 120
           N MK SGELVFWKNNY K DP+A PRRGRGRPPKPK     P+   AV            
Sbjct: 61  NRMKDSGELVFWKNNYSKPDPNAPPRRGRGRPPKPK----VPLPPGAVLXXXXXXXXXXX 120

[Close]

BLAST of Carg07460 vs. TrEMBL
Match: tr|A0A1S2YD86|A0A1S2YD86_CICAR (HMG-Y-related protein A-like OS=Cicer arietinum OX=3827 GN=LOC101502366 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.3e-33
Identity = 79/131 (60.31%), Postives = 93/131 (70.99%), Query Frame = 0


Query: 6   LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
           +P YP+MILRAIEALN +NGSNKS+ISKYIESTY  LP GH +LL LHL  M+ SGELVF
Sbjct: 13  IPSYPEMILRAIEALNEENGSNKSSISKYIESTYGGLPHGHRALLNLHLARMRDSGELVF 72

Query: 66  WKNNYMKRDPSAAPRRGRGRPPKPKE--------------HRDSPIAAKAVKMKVSSGTG 123
           WKNNY KRD +A PRRGRGRPPK KE               R   + +  +K+K S G+G
Sbjct: 73  WKNNYTKRDLNAPPRRGRGRPPKSKEPFQSGTIYSPPKPKGRPPNVTSGPMKVKASVGSG 132

The following BLAST results are available for this feature:

BLAST of Carg07460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948333.1	1.9e-65	98.04	HMG-Y-related protein A-like [Cucurbita moschata]	[more]
XP_023525091.1	1.3e-61	91.50	HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998677.1	2.4e-60	92.16	HMG-Y-related protein A-like [Cucurbita maxima]	[more]
XP_022143283.1	4.9e-37	86.17	HMG-Y-related protein A-like [Momordica charantia]	[more]
XP_004145857.1	5.5e-36	77.78	PREDICTED: HMG-Y-related protein A-like [Cucumis sativus] >KGN57766.1 hypothetic...	[more]

BLAST of Carg07460 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	6.0e-21	62.50	high mobility group A	[more]
AT1G48620.1	1.1e-11	35.71	high mobility group A5	[more]
AT3G18035.1	4.3e-11	46.58	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	8.5e-07	38.81	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	3.0e-04	41.38	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of Carg07460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q00423\|HMGYA_SOYBN	1.7e-25	64.58	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q43386\|HMGYA_ARATH	1.1e-19	62.50	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
sp\|Q9FYS5\|HMGYA_MAIZE	1.1e-19	59.55	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]
sp\|Q10370\|HMGYB_SOYBN	6.0e-18	66.67	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|P40267\|H1_SOLPN	8.4e-04	38.46	Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1	[more]

BLAST of Carg07460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCH9\|A0A0A0LCH9_CUCSA	3.6e-36	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1	[more]
tr\|A0A1S3C432\|A0A1S3C432_CUCME	4.7e-36	84.38	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
tr\|A0A2P5EU67\|A0A2P5EU67_9ROSA	4.0e-35	61.49	High mobility group protein HMGA OS=Trema orientalis OX=63057 GN=TorRG33x02_1513...	[more]
tr\|A0A2P5C3B6\|A0A2P5C3B6_PARAD	4.0e-35	61.49	High mobility group protein HMGA OS=Parasponia andersonii OX=3476 GN=PanWU01x14_...	[more]
tr\|A0A1S2YD86\|A0A1S2YD86_CICAR	8.3e-33	60.31	HMG-Y-related protein A-like OS=Cicer arietinum OX=3827 GN=LOC101502366 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0000785	chromatin
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR031059	HMGA_plant
IPR036388	WH-like_DNA-bd_sf
IPR005818	Histone_H1/H5_H15
IPR000116	HMGA
IPR017956	AT_hook_DNA-bd_motif

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07460-RA	Carg07460-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 132..142 score: 68.56 coord: 109..120 score: 46.18 coord: 80..90 score: 69.32
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 111..123 e-value: 5.2 score: 11.2 coord: 80..92 e-value: 54.0 score: 5.5 coord: 134..146 e-value: 0.64 score: 16.3
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 109..120 score: 33.33 coord: 123..142 score: 40.0 coord: 78..90 score: 53.85
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 3..69 e-value: 2.5E-19 score: 80.2
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 7..67 e-value: 6.1E-10 score: 39.2
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 5..74 score: 20.779
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 2..79 e-value: 3.8E-10 score: 41.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..153
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 4..152
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF49	SUBFAMILY NOT NAMED	coord: 4..152
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 3..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07460	Cla013219	Watermelon (97103) v1	carwmB0760
Carg07460	MELO3C020191	Melon (DHL92) v3.5.1	carmeB0757
Carg07460	ClCG05G011490	Watermelon (Charleston Gray)	carwcgB0739
Carg07460	Cucsa.031270	Cucumber (Gy14) v1	carcgyB0854
Carg07460	CmaCh14G008230	Cucurbita maxima (Rimu)	carcmaB1057
Carg07460	CmaCh01G003760	Cucurbita maxima (Rimu)	carcmaB1059
Carg07460	CmoCh14G008380	Cucurbita moschata (Rifu)	carcmoB1031
Carg07460	CmoCh01G003930	Cucurbita moschata (Rifu)	carcmoB1033
Carg07460	Lsi05G003580	Bottle gourd (USVL1VR-Ls)	carlsiB700
Carg07460	Cp4.1LG03g05980	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07460	Cp4.1LG02g16890	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07460	Cla97C05G093550	Watermelon (97103) v2	carwmbB0795
Carg07460	Bhi01G001494	Wax gourd	carwgoB0896

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07460	Carg22258	Silver-seed gourd	carcarB471

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07460	Cucumber (Gy14) v2	carcgybB0757
Carg07460	Wild cucumber (PI 183967)	carcpiB0798
Carg07460	Cucumber (Chinese Long) v2	carcuB0780
Carg07460	Cucumber (Chinese Long) v3	carcucB0801
Carg07460	Melon (DHL92) v3.5.1	carmeB0756
Carg07460	Melon (DHL92) v3.6.1	carmedB0771