Cp4.1LG02g16890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g16890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHMG-Y-related A
LocationCp4.1LG02 : 12457394 .. 12458805 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATAATAATAAAAAGAAGAAATTTCTCAAAAATCCCTTTTTCAAATCTGTTCTAAATCCAAACAGTTTTGCAGTCAATTTGGTTCCTCTCTAATCTCTACCAGCTGCTTTCTGCAGGCTTCAGGGAAATAAAAGCTTTGTTTTTCAAATTTCAATGGCGACTGAAGAGCTGCCTCCTTACCCTCAGGTTCATTCATGATTTGTTCTTCATTTTATTGTTTTTTTTTCTCTTAATTCTTCGTGGGTTTCGTCCTACTGCCTCTAATTTCTTGAATCTGCTTCTGGGTTTGTGCGTTTGCACCTTAATTTGTTCTTGATTCAGAGTTTCTCGTGATTCTTTTTGTTGTTGTTCTGTGATGATTTGATGAACAGGGGAAATTTCTACTTTCATTTTTGGATTTGATTTGAAATGATAAGGGATTTGATGTTAATTTTTTGACGATTTGTAGATGTTAGATCTGTTCTTAAGTTTCTTTCTAGATCTACAAATCATGAAAGGAAAAAGGATGAATCAAAACACCATTTGTGATGGAAATGCTTTGAATATTGCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGACAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCGACATATGAGAACTTACCAACTGGGCATTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGCGGAGAGCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCGCGGCGGGGGCGTGGCAGGCCTCCCAAGCCAAAGGAGCAGAGGGAGCCCCCTATTGCAGCAAAGGCAGTGAAGATGAAGGTATCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGCCAGTGGCCACAACAGCTCTGCCACCACCGAGCGGTAGGCCTAGAGGTCGACCGCCTAAGGTGAAGGCTCTGTTGACTGAAGTTAGCGTAATATAATAGATAGATTGTTGCAGTGTGCAGTGCAGTGTTGATTGGTAGTGCCATGACTCGCTCTCTCTGTTGCTGTGTGAGCTGTTGTAGTTGTAATTGTTGTAAAATGTGGTGTACTGGCTTGTGAGGGCTCACGTCTAATCATCCTTCATTAGCGTTTCAAACCTTAAAAGTTCAAACACGACACATCCACTAGTAGATATTGTCTGTTTTAGTTTGATATGTATAGCCGTCTCATGGTTTTAAAACGCGTTTGATAGGGAGAGATTTCAGTACTATTATAAGAATGTTTCATACCCTTTTCTAACTTACGTGAGATCTCATAATCTTAGGGGCCAGAGTTCTTGTTGGCACACTACTCGGTGCCTGACTTTGATACTATTTGTAACAGTTTAAATCTACTTCTAGTCGATCTTGTTCGCTTTAGCTTGTTACGT

mRNA sequence

AAATAATAATAAAAAGAAGAAATTTCTCAAAAATCCCTTTTTCAAATCTGTTCTAAATCCAAACAGTTTTGCAGTCAATTTGGTTCCTCTCTAATCTCTACCAGCTGCTTTCTGCAGGCTTCAGGGAAATAAAAGCTTTGTTTTTCAAATTTCAATGGCGACTGAAGAGCTGCCTCCTTACCCTCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGACAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCGACATATGAGAACTTACCAACTGGGCATTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGCGGAGAGCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCGCGGCGGGGGCGTGGCAGGCCTCCCAAGCCAAAGGAGCAGAGGGAGCCCCCTATTGCAGCAAAGGCAGTGAAGATGAAGGTATCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGCCAGTGGCCACAACAGCTCTGCCACCACCGAGCGGTAGGCCTAGAGGTCGACCGCCTAAGGTGAAGGCTCTGTTGACTGAAGTTAGCGTAATATAATAGATAGATTGTTGCAGTGTGCAGTGCAGTGTTGATTGGTAGTGCCATGACTCGCTCTCTCTGTTGCTGTGTGAGCTGTTGTAGTTGTAATTGTTGTAAAATGTGGTGTACTGGCTTGTGAGGGCTCACGTCTAATCATCCTTCATTAGCGTTTCAAACCTTAAAAGTTCAAACACGACACATCCACTAGTAGATATTGTCTGTTTTAGTTTGATATGTATAGCCGTCTCATGGTTTTAAAACGCGTTTGATAGGGAGAGATTTCAGTACTATTATAAGAATGTTTCATACCCTTTTCTAACTTACGTGAGATCTCATAATCTTAGGGGCCAGAGTTCTTGTTGGCACACTACTCGGTGCCTGACTTTGATACTATTTGTAACAGTTTAAATCTACTTCTAGTCGATCTTGTTCGCTTTAGCTTGTTACGT

Coding sequence (CDS)

ATGGCGACTGAAGAGCTGCCTCCTTACCCTCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGACAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCGACATATGAGAACTTACCAACTGGGCATTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGCGGAGAGCTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCGCGGCGGGGGCGTGGCAGGCCTCCCAAGCCAAAGGAGCAGAGGGAGCCCCCTATTGCAGCAAAGGCAGTGAAGATGAAGGTATCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGCCAGTGGCCACAACAGCTCTGCCACCACCGAGCGGTAGGCCTAGAGGTCGACCGCCTAAGGTGAAGGCTCTGTTGACTGAAGTTAGCGTAATATAA

Protein sequence

MATEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRGRPRKLPQPVATTALPPPSGRPRGRPPKVKALLTEVSVI
Homology
[Close]
BLAST of Cp4.1LG02g16890 vs. Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.7e-38
Identity = 94/176 (53.41%), Postives = 114/176 (64.77%), Query Frame = 1 

Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MI++ +EALN  NGSNKS ISKYIE+TY  LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPD--ATVLGSHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQ-----------------REPPI 120
           N MK SGEL F +NNYMK DP+A P+RGRGRPPKPK                   ++P  
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQ-PVATTALPPPSGRPRGRPPKVKALLTEVSV 153
             K+ K K + G+G+PRGRP+K+P+ P         SGRPRGRPPKVK  LTEVSV
Sbjct: 121 PPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSV 174

[Close]
BLAST of Cp4.1LG02g16890 vs. Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-31
Identity = 79/142 (55.63%), Postives = 93/142 (65.49%), Query Frame = 1 

Query: 6   LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
           LPPYPQMI+ AIE+LN  NG NK+TI+K+IEST + LP  H +LL+ HLN MK +G+L+ 
Sbjct: 23  LPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIM 82

Query: 66  WKNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRGRPRKLPQPVA 125
            KNNYMK DP A P+RGRGRPPK K Q E   AA AV       T  PR R R  P+P  
Sbjct: 83  VKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRP-PKPKD 142

Query: 126 TTALPPP-----SGRPRGRPPK 143
            +  P       SGRPRGRPPK
Sbjct: 143 PSEPPQEKVITGSGRPRGRPPK 163

[Close]
BLAST of Cp4.1LG02g16890 vs. Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-29
Identity = 79/151 (52.32%), Postives = 95/151 (62.91%), Query Frame = 1 

Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      +PPYP+MIL AIE L+  +GSNKS ISKYIE  Y +LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGELVFWKNNYMKRD-PSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKP 120
             MK SGELVF KNNY +   P A P+RGRGRPPK ++   P  A K+      S TG+ 
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKS-----PSSTGRG 120

Query: 121 RGRPRKLPQPVATTALPPPSG--RPRGRPPK 143
           RGRP K   P+        +G  +PRGRPPK
Sbjct: 121 RGRPPKAKSPLEAAVKQATAGMPKPRGRPPK 146

[Close]
BLAST of Cp4.1LG02g16890 vs. Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.7e-29
Identity = 78/152 (51.32%), Postives = 95/152 (62.50%), Query Frame = 1 

Query: 19  ALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFWKNNYMKRDPSAA 78
           ALN  +GSNKS ISKYIE+TY  LP    ++L  HLN MK SGEL F +NNYMK DP+A 
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 79  PRRGRGRPPKPK-----------------EQREPPIAAKAVKMKVSSGTGKPRGRPRKLP 138
           P+RGRGRPPKPK                   ++P    K+ K K +  TG+PRGRP+K+ 
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPKAKATPATGRPRGRPKKVA 120

Query: 139 Q-PVATTALPPPSGRPRGRPPKVKALLTEVSV 153
           + P   +     +GRPRGRPPKVK  LTEVSV
Sbjct: 121 RSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSV 150

[Close]
BLAST of Cp4.1LG02g16890 vs. Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 49/157 (31.21%), Postives = 77/157 (49.04%), Query Frame = 1 

Query: 3   TEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGE 62
           T   P + +MI  AI  L    GS++  I+K++E  ++ LP+    LL  HL  + ASG+
Sbjct: 48  TSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGK 107

Query: 63  LVFWKNNYMKRDPSAAPRRGRGRPPK-PKEQREPPIAAKAVKMKVSSGTGKPRGRPRKLP 122
           LV  KN++      AAP     + P  PK    P +AAK    K+ +   KP+ + +   
Sbjct: 108 LVKVKNSFKLPSARAAPAPALAKKPTIPK----PKVAAKPKTAKIGA---KPKAKAKVAA 167

Query: 123 QPVATT---ALPPPSGRPR----GRPPKVKALLTEVS 152
           +  ATT   A   P+ +P+    G+P  V A   +V+
Sbjct: 168 KTKATTKTVAKKIPAAKPKAKTAGKPKTVAAKPAKVA 197

[Close]
BLAST of Cp4.1LG02g16890 vs. TrEMBL
Match: A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-57
Identity = 127/178 (71.35%), Postives = 134/178 (75.28%), Query Frame = 1 

Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNSDNGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPK--------------------PKEQRE 120
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK                    PK+   
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPIAAKAVKMKVSSGTGKPRGRPRKLPQPVATTALPPPSGRPRGRPPKVKALLTEVSV 153
           PP   K V+MKVSSGTGKPRGRPRK PQ  +T A P PSGRPRGRPPKVKA LTEVSV
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]
BLAST of Cp4.1LG02g16890 vs. TrEMBL
Match: M5XB09_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.8e-43
Identity = 107/181 (59.12%), Postives = 124/181 (68.51%), Query Frame = 1 

Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MIL+AIEALN  NGSNKS+ISK+IESTY +LP GH+SLL+ HL
Sbjct: 1   MATEEVNKPLSLPPYPEMILKAIEALNEKNGSNKSSISKFIESTYGDLPAGHNSLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQ-----------------REPPI 120
           N MK SGELVFWKNNY K DP+A PRRGRGRPPKPK+                  ++P  
Sbjct: 61  NKMKDSGELVFWKNNYTKPDPNAPPRRGRGRPPKPKDSLPPDAVLGPTRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQPV-----ATTALPPPSGRPRGRPPKVK-ALLTEVS 153
             K  K+KVSSG+GKPRGRPRK+ +P      + T      GRPRGRPPKVK +L  EVS
Sbjct: 121 PPKPPKVKVSSGSGKPRGRPRKMAKPTGGLSGSATVTDTMPGRPRGRPPKVKDSLSAEVS 180

[Close]
BLAST of Cp4.1LG02g16890 vs. TrEMBL
Match: Q42461_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.8e-43
Identity = 102/176 (57.95%), Postives = 122/176 (69.32%), Query Frame = 1 

Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+M+++A++ALN  +GSNKS ISKYIESTY  LP GH++LL  HL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPK-----------------EQREPPI 120
           N MK SGELVF KNNYMK DP+A P+RGRGRPPKPK                   ++P  
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQ-PVATTALPPPSGRPRGRPPKVKALLTEVSV 153
             K+ K KVS+G+G+PRGRP+K+ + P A    P PSGRPRGRPPKVK  LTEVSV
Sbjct: 121 PPKSPKTKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEVSV 176

[Close]
BLAST of Cp4.1LG02g16890 vs. TrEMBL
Match: Q42492_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.9e-41
Identity = 101/176 (57.39%), Postives = 119/176 (67.61%), Query Frame = 1 

Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPY +MI +A+++LN  NGSNKS ISKYIEST   LP GHS+LL  HL
Sbjct: 1   MATEEVNKPPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPK-----------------EQREPPI 120
           N MK SGELVF KNNYMK DP++ P+RGRGRPPKPK                   ++P  
Sbjct: 61  NKMKESGELVFLKNNYMKPDPTSPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQPVATTA-LPPPSGRPRGRPPKVKALLTEVSV 153
             K+ K KVS+G+G+PRGRP+K+ +  A  A  P PSGRPRGRPPKVK  LTEVSV
Sbjct: 121 PTKSPKAKVSTGSGRPRGRPKKIARSAAVVAPTPGPSGRPRGRPPKVKPQLTEVSV 176

[Close]
BLAST of Cp4.1LG02g16890 vs. TrEMBL
Match: W9SBR8_9ROSA (HMG-Y-related protein A OS=Morus notabilis GN=L484_027189 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.9e-41
Identity = 103/178 (57.87%), Postives = 119/178 (66.85%), Query Frame = 1 

Query: 6   LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
           LPPYP++ILRAIEALN  NGSNKS+ISKYIESTY +LP GHS+LL+ HLN MK +GELVF
Sbjct: 36  LPPYPEIILRAIEALNDQNGSNKSSISKYIESTYGDLPAGHSALLSHHLNRMKETGELVF 95

Query: 66  WKNNYMKRDPSAAPRRGRGRPPK----------------------PKEQREPPIAAKAVK 125
           WKNNY+K DP+A PRRGRGRPPK                      PK+   PP   K  K
Sbjct: 96  WKNNYLKPDPNAPPRRGRGRPPKDPNAQPKSPSSYSGPARPRGRPPKDPNAPP---KPPK 155

Query: 126 MKVSSGTGKPRGRPRKLPQPV-------ATTALPPPSGRP--RGRPPKVKALLTEVSV 153
           MK++S +GKPRGRPRK+ +P        A  A    SG+P  RGRPPKVK  LTEVSV
Sbjct: 156 MKLASDSGKPRGRPRKMAKPTGGFGGSGAAAAAAVSSGKPRGRGRPPKVKTQLTEVSV 210

[Close]
BLAST of Cp4.1LG02g16890 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A)

HSP 1 Score: 137.5 bits (345), Expect = 6.9e-33
Identity = 79/142 (55.63%), Postives = 93/142 (65.49%), Query Frame = 1 

Query: 6   LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
           LPPYPQMI+ AIE+LN  NG NK+TI+K+IEST + LP  H +LL+ HLN MK +G+L+ 
Sbjct: 23  LPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIM 82

Query: 66  WKNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRGRPRKLPQPVA 125
            KNNYMK DP A P+RGRGRPPK K Q E   AA AV       T  PR R R  P+P  
Sbjct: 83  VKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRP-PKPKD 142

Query: 126 TTALPPP-----SGRPRGRPPK 143
            +  P       SGRPRGRPPK
Sbjct: 143 PSEPPQEKVITGSGRPRGRPPK 163

[Close]
BLAST of Cp4.1LG02g16890 vs. TAIR10
Match: AT1G48620.1 (AT1G48620.1 high mobility group A5)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-14
Identity = 52/138 (37.68%), Postives = 65/138 (47.10%), Query Frame = 1 

Query: 7   PPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFW 66
           PPY  MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLT HL  +K SG LV  
Sbjct: 76  PPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMV 135

Query: 67  KNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRGRPRKLPQPVAT 126
           K +Y         +     PP P     P +        V+          + LP PV  
Sbjct: 136 KKSY---------KLASTPPPPPPTSVAPSLEPPRSDFIVNEN--------QPLPDPVLA 195

Query: 127 TALPPPSGRPRGRPPKVK 145
           ++ P    R RGRPPK K
Sbjct: 196 SSTPQTIKRGRGRPPKAK 196

[Close]
BLAST of Cp4.1LG02g16890 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-11
Identity = 49/140 (35.00%), Postives = 63/140 (45.00%), Query Frame = 1 

Query: 7   PPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFW 66
           PPY +MI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLT HL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 67  KNNYMKRDPSAAPRRGRGRPPKPKEQREPPIAAKAVKMKVSSGTGKPRGR--PRKLPQPV 126
           K +Y                 K      PP +        + G   PR          P+
Sbjct: 126 KKSY-----------------KIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPM 185

Query: 127 ATTALPPPSGRPRGRPPKVK 145
           A+ +   P  R RGRPPK K
Sbjct: 186 ASGSASQPLKRGRGRPPKPK 188

[Close]
BLAST of Cp4.1LG02g16890 vs. TAIR10
Match: AT5G08780.1 (AT5G08780.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-07
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 1 

Query: 3   TEELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGE 62
           T + P Y  MI  AI  LN + G+++  IS++I+S Y+NLP  H++LL+ HL  +    E
Sbjct: 52  TPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKRE 111

Query: 63  LVFWKNN 70
           ++   NN
Sbjct: 112 ILCDCNN 118

[Close]
BLAST of Cp4.1LG02g16890 vs. NCBI nr
Match: gi|449456239|ref|XP_004145857.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-57
Identity = 127/178 (71.35%), Postives = 134/178 (75.28%), Query Frame = 1 

Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNSDNGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPK--------------------PKEQRE 120
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK                    PK+   
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPIAAKAVKMKVSSGTGKPRGRPRKLPQPVATTALPPPSGRPRGRPPKVKALLTEVSV 153
           PP   K V+MKVSSGTGKPRGRPRK PQ  +T A P PSGRPRGRPPKVKA LTEVSV
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]
BLAST of Cp4.1LG02g16890 vs. NCBI nr
Match: gi|659114297|ref|XP_008456999.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 127/178 (71.35%), Postives = 133/178 (74.72%), Query Frame = 1 

Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNSDNGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPK--------------------PKEQRE 120
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK                    PK+   
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPIAAKAVKMKVSSGTGKPRGRPRKLPQPVATTALPPPSGRPRGRPPKVKALLTEVSV 153
           PP   K V+MKVSSGTGKPRGRPRK PQ   T A P PSGRPRGRPPKVKA LTEVSV
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]
BLAST of Cp4.1LG02g16890 vs. NCBI nr
Match: gi|1009126639|ref|XP_015880263.1| (PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba])

HSP 1 Score: 189.1 bits (479), Expect = 5.7e-45
Identity = 104/172 (60.47%), Postives = 116/172 (67.44%), Query Frame = 1 

Query: 4   EELPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGEL 63
           + LPPYP+MI+RAIEALN  NGSNKSTISKYIESTY  LP GHS LL+ HLN MK SGEL
Sbjct: 10  QSLPPYPEMIIRAIEALNDKNGSNKSTISKYIESTYGELPAGHSQLLSHHLNRMKESGEL 69

Query: 64  VFWKNNYMKRDPSAAPRRGRGRPPKPKEQ-----------------REPPIAAKAVKMKV 123
           VFWKNNY K DP+A PRRGRGRPPKPKE                  ++P    K  K+K+
Sbjct: 70  VFWKNNYTKADPNAPPRRGRGRPPKPKEPLPPGASLGPMRPRGRPPKDPDAPPKPTKLKI 129

Query: 124 SSGTGKPRGRPRKLPQPV------ATTALPPPSGRPRGRPPKVKALLTEVSV 153
           SSG+GKPRGRPRK+ +P        TT      GR RGRPPKVK   TEVSV
Sbjct: 130 SSGSGKPRGRPRKMARPTGGLGASTTTMATATGGRGRGRPPKVKPTFTEVSV 181

[Close]
BLAST of Cp4.1LG02g16890 vs. NCBI nr
Match: gi|595926770|ref|XP_007215046.1| (hypothetical protein PRUPE_ppa012096mg [Prunus persica])

HSP 1 Score: 183.0 bits (463), Expect = 4.1e-43
Identity = 107/181 (59.12%), Postives = 124/181 (68.51%), Query Frame = 1 

Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MIL+AIEALN  NGSNKS+ISK+IESTY +LP GH+SLL+ HL
Sbjct: 1   MATEEVNKPLSLPPYPEMILKAIEALNEKNGSNKSSISKFIESTYGDLPAGHNSLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQ-----------------REPPI 120
           N MK SGELVFWKNNY K DP+A PRRGRGRPPKPK+                  ++P  
Sbjct: 61  NKMKDSGELVFWKNNYTKPDPNAPPRRGRGRPPKPKDSLPPDAVLGPTRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQPV-----ATTALPPPSGRPRGRPPKVK-ALLTEVS 153
             K  K+KVSSG+GKPRGRPRK+ +P      + T      GRPRGRPPKVK +L  EVS
Sbjct: 121 PPKPPKVKVSSGSGKPRGRPRKMAKPTGGLSGSATVTDTMPGRPRGRPPKVKDSLSAEVS 180

[Close]
BLAST of Cp4.1LG02g16890 vs. NCBI nr
Match: gi|1181589|dbj|BAA11766.1| (high mobility group protein [Canavalia gladiata])

HSP 1 Score: 182.2 bits (461), Expect = 6.9e-43
Identity = 102/176 (57.95%), Postives = 122/176 (69.32%), Query Frame = 1 

Query: 1   MATEE------LPPYPQMILRAIEALNSDNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+M+++A++ALN  +GSNKS ISKYIESTY  LP GH++LL  HL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPK-----------------EQREPPI 120
           N MK SGELVF KNNYMK DP+A P+RGRGRPPKPK                   ++P  
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 AAKAVKMKVSSGTGKPRGRPRKLPQ-PVATTALPPPSGRPRGRPPKVKALLTEVSV 153
             K+ K KVS+G+G+PRGRP+K+ + P A    P PSGRPRGRPPKVK  LTEVSV
Sbjct: 121 PPKSPKTKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEVSV 176

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g16890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HMGYA_SOYBN6.7e-3853.41HMG-Y-related protein A OS=Glycine max PE=2 SV=1[more]
HMGYA_ARATH1.2e-3155.63HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1[more]
HMGYA_MAIZE2.5e-2952.32HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1[more]
HMGYB_SOYBN5.7e-2951.32HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1[more]
H1_EUPES1.4e-0631.21Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
BLAST of Cp4.1LG02g16890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCH9_CUCSA1.2e-5771.35Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1[more]
M5XB09_PRUPE2.8e-4359.12Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1[more]
Q42461_CANGL4.8e-4357.95High mobility group protein OS=Canavalia gladiata PE=2 SV=1[more]
Q42492_CANGL5.9e-4157.39High mobility group protein OS=Canavalia gladiata PE=2 SV=1[more]
W9SBR8_9ROSA5.9e-4157.87HMG-Y-related protein A OS=Morus notabilis GN=L484_027189 PE=3 SV=1[more]
BLAST of Cp4.1LG02g16890 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14900.16.9e-3355.63 high mobility group A[more]
AT1G48620.14.2e-1437.68 high mobility group A5[more]
AT3G18035.13.3e-1135.00 winged-helix DNA-binding transcription factor family protein[more]
AT5G08780.18.5e-0738.81 winged-helix DNA-binding transcription factor family protein[more]
BLAST of Cp4.1LG02g16890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449456239|ref|XP_004145857.1|1.7e-5771.35PREDICTED: HMG-Y-related protein A-like [Cucumis sativus][more]
gi|659114297|ref|XP_008456999.1|2.2e-5771.35PREDICTED: HMG-Y-related protein A-like [Cucumis melo][more]
gi|1009126639|ref|XP_015880263.1|5.7e-4560.47PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba][more]
gi|595926770|ref|XP_007215046.1|4.1e-4359.12hypothetical protein PRUPE_ppa012096mg [Prunus persica][more]
gi|1181589|dbj|BAA11766.1|6.9e-4357.95high mobility group protein [Canavalia gladiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0000785chromatin
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
IPR011991Winged helix-turn-helix DNA-binding domain
IPR005818Histone_H1/H5_H15
IPR000116HMGA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0000785 chromatin
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g16890.1Cp4.1LG02g16890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000116High mobility group protein HMGAPRINTSPR00930HIGHMOBLTYIYcoord: 123..142
score: 2.6E-5coord: 109..120
score: 2.6E-5coord: 78..90
score: 2.
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 7..67
score: 7.3
IPR005818Linker histone H1/H5, domain H15SMARTSM00526h15plus2coord: 3..69
score: 2.5
IPR005818Linker histone H1/H5, domain H15PROFILEPS51504H15coord: 5..74
score: 20
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 3..80
score: 2.0
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 3..81
score: 4.79
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 132..142
score: 2.1E-12coord: 109..120
score: 2.1E-12coord: 80..90
score: 2.1
IPR017956AT hook, DNA-binding motifPFAMPF02178AT_hookcoord: 81..88
score: 4.5coord: 134..144
score: 0.064coord: 111..119
score:
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 80..92
score: 19.0coord: 134..146
score: 0.64coord: 111..123
score:
NoneNo IPR availablePANTHERPTHR11467HISTONE H1/H5coord: 6..153
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g16890Cucsa.031270Cucumber (Gy14) v1cgycpeB0008
Cp4.1LG02g16890CmaCh14G008230Cucurbita maxima (Rimu)cmacpeB279
Cp4.1LG02g16890CmaCh01G003760Cucurbita maxima (Rimu)cmacpeB491
Cp4.1LG02g16890CmoCh14G008380Cucurbita moschata (Rifu)cmocpeB241
Cp4.1LG02g16890CmoCh01G003930Cucurbita moschata (Rifu)cmocpeB449
Cp4.1LG02g16890Cla013219Watermelon (97103) v1cpewmB568
Cp4.1LG02g16890ClCG05G011490Watermelon (Charleston Gray)cpewcgB518
Cp4.1LG02g16890CSPI03G20830Wild cucumber (PI 183967)cpecpiB550
Cp4.1LG02g16890Lsi05G003580Bottle gourd (USVL1VR-Ls)cpelsiB470
Cp4.1LG02g16890Carg22258Silver-seed gourdcarcpeB0672
Cp4.1LG02g16890Carg07460Silver-seed gourdcarcpeB1072
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g16890Cp4.1LG03g05980Cucurbita pepo (Zucchini)cpecpeB449
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g16890Wild cucumber (PI 183967)cpecpiB552
Cp4.1LG02g16890Cucumber (Chinese Long) v2cpecuB547
Cp4.1LG02g16890Melon (DHL92) v3.5.1cpemeB529
Cp4.1LG02g16890Cucumber (Gy14) v2cgybcpeB380
Cp4.1LG02g16890Melon (DHL92) v3.6.1cpemedB630
Cp4.1LG02g16890Cucumber (Chinese Long) v3cpecucB0686
Cp4.1LG02g16890Wax gourdcpewgoB0673