CmaCh01G003760 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G003760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	High mobility group protein
Location	Cma_Chr01 : 1891217 .. 1892516 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAAATAAAAAGAAGAAATTTCTCAAAACTCCCTTTTTCAAATCAGTTCTAAATCGAAACAGTTTTGCAGTCAATTTGGTTCCTCTCTCTATCTCTACCAGCTGCTTTCTGTAGGCTTCAGGGAAATAAAAGCTTTGTTTTTCAAATTTCAATGGCGACTGAAGAGCTGCCTCCTTACCCTCAGGTTCATTCATGATTTGTTCTTCATTTTGTTGATTTTTTTCTCTTAATTCTTCGTGGGTTTCGTCCTACTACCTCTAATTTCTTGAATCTGCTTCTGGGTCTGTGCGTTTGCCCCTTGATTTGTTCTTGAATCAGAGTTTCTCGTGATTCTTTTTGTTGTTGTTCTGTGATGATTTGATGAACAGGGGAAATTTCTACTCTCGTTCTTGGATTTGATTTGAAATGACAAGGGATTTGATGCTAATTTTTTTGAAGATTTGTAGATGTTAGATCTGTTCTCAAGTTTCTTTCTAGATCTGCAAATCATGAAAGGAAAAGGATGAATCAAAACACCATTTGTGATGGAAATGCTATGAATATTGCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGGCAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCAACATATGAGAACTTACCAACTGGGCACTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGTGGAGAGCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCGCGGCGGGGGCGTGGCAGGCCTCCCAAGCCAAAGGAGCAGAGGGAGCCCCCCAATGCAACCAAGGCAGTGAAGATGAAGGTGTCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGCCAGTGACCACAACAGCTCTGCCACCACCGAGCGGGAGGCCCAGAGGTCGACCGCCTAAGGTGAAGGCTCTATTGACTGAAGTTAGCGTTCTGTAATAGATAGATTGTTGCAGTGTGCAGTGCAGTGTTAATTGGTAGTGCCATGACTCGCTCTCTCTGTTGCTGTGTGAGCTGTTGTAGTTGTAATTGATGTAAAATGTGGTGTAGTGGTTTGTGTGGGCTCAAGTTGACCTCTGCTAATCATCCTTTCTTTAGTGTTTTCAAACCTTAAAACTTCAAACACGACTCATCTACTAGTAGATATTGTCTGTTTTAACTTGATATGTATAGCCGTCTCATTGTTTTAAAACGTACCCTTTCTAACTTATGTGAGATCTTATAATCTATTCTCTTGGGGGCCAGAGTCTTTATTTGCA

mRNA sequence

CAAAAAAATAAAAAGAAGAAATTTCTCAAAACTCCCTTTTTCAAATCAGTTCTAAATCGAAACAGTTTTGCAGTCAATTTGGTTCCTCTCTCTATCTCTACCAGCTGCTTTCTGTAGGCTTCAGGGAAATAAAAGCTTTGTTTTTCAAATTTCAATGGCGACTGAAGAGCTGCCTCCTTACCCTCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGGCAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCAACATATGAGAACTTACCAACTGGGCACTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGTGGAGAGCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCGCGGCGGGGGCGTGGCAGGCCTCCCAAGCCAAAGGAGCAGAGGGAGCCCCCCAATGCAACCAAGGCAGTGAAGATGAAGGTGTCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGCCAGTGACCACAACAGCTCTGCCACCACCGAGCGGGAGGCCCAGAGGTCGACCGCCTAAGGTGAAGGCTCTATTGACTGAAGTTAGCGTTCTGTAATAGATAGATTGTTGCAGTGTGCAGTGCAGTGTTAATTGGTAGTGCCATGACTCGCTCTCTCTGTTGCTGTGTGAGCTGTTGTAGTTGTAATTGATGTAAAATGTGGTGTAGTGGTTTGTGTGGGCTCAAGTTGACCTCTGCTAATCATCCTTTCTTTAGTGTTTTCAAACCTTAAAACTTCAAACACGACTCATCTACTAGTAGATATTGTCTGTTTTAACTTGATATGTATAGCCGTCTCATTGTTTTAAAACGTACCCTTTCTAACTTATGTGAGATCTTATAATCTATTCTCTTGGGGGCCAGAGTCTTTATTTGCA

Coding sequence (CDS)

ATGGCGACTGAAGAGCTGCCTCCTTACCCTCAGATGATATTAAGGGCTATTGAAGCATTGAACAGTGGCAATGGCTCAAACAAGTCCACGATATCAAAGTACATTGAATCAACATATGAGAACTTACCAACTGGGCACTCATCTTTGCTCACGCTCCATTTGAACATGATGAAGGCCAGTGGAGAGCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCCTCGGCTGCTCCGCGGCGGGGGCGTGGCAGGCCTCCCAAGCCAAAGGAGCAGAGGGAGCCCCCCAATGCAACCAAGGCAGTGAAGATGAAGGTGTCATCTGGGACAGGGAAGCCAAGAGGACGACCGAGGAAGTTGCCTCAGCCAGTGACCACAACAGCTCTGCCACCACCGAGCGGGAGGCCCAGAGGTCGACCGCCTAAGGTGAAGGCTCTATTGACTGAAGTTAGCGTTCTGTAA

Protein sequence

MATEELPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREPPNATKAVKMKVSSGTGKPRGRPRKLPQPVTTTALPPPSGRPRGRPPKVKALLTEVSVL

Homology

[Close]

BLAST of CmaCh01G003760 vs. Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-38
Identity = 97/176 (55.11%), Postives = 115/176 (65.34%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MI++ +EALN  NGSNKS ISKYIE+TY  LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPD--ATVLGSHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREP----------------PNA 120
           N MK SGEL F +NNYMK DP+A P+RGRGRPPKPK    P                PNA
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 T-KAVKMKVSSGTGKPRGRPRKLPQ-PVTTTALPPPSGRPRGRPPKVKALLTEVSV 153
             K+ K K + G+G+PRGRP+K+P+ P         SGRPRGRPPKVK  LTEVSV
Sbjct: 121 PPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSV 174

[Close]

BLAST of CmaCh01G003760 vs. Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.6e-31
Identity = 82/173 (47.40%), Postives = 104/173 (60.12%), Query Frame = 1


Query: 6   LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
           LPPYPQMI+ AIE+LN  NG NK+TI+K+IEST + LP  H +LL+ HLN MK +G+L+ 
Sbjct: 23  LPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIM 82

Query: 66  WKNNYMKRDPSAAPRRGRGRPPKPKEQRE---------------------------PPNA 125
            KNNYMK DP A P+RGRGRPPK K Q E                           P + 
Sbjct: 83  VKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKDP 142

Query: 126 TKAVKMKVSSGTGKPRGRPRKLPQPVT-TTALPPPSG------RPRGRPPKVK 145
           ++  + KV +G+G+PRGRP K P+  + T A P P+       R RGRPPKVK
Sbjct: 143 SEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of CmaCh01G003760 vs. Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.3e-29
Identity = 79/151 (52.32%), Postives = 95/151 (62.91%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      +PPYP+MIL AIE L+  +GSNKS ISKYIE  Y +LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGELVFWKNNYMKRD-PSAAPRRGRGRPPKPKEQREPPNATKAVKMKVSSGTGKP 120
             MK SGELVF KNNY +   P A P+RGRGRPPK ++   P  A K+      S TG+ 
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKS-----PSSTGRG 120

Query: 121 RGRPRKLPQPVTTTALPPPSG--RPRGRPPK 143
           RGRP K   P+        +G  +PRGRPPK
Sbjct: 121 RGRPPKAKSPLEAAVKQATAGMPKPRGRPPK 146

[Close]

BLAST of CmaCh01G003760 vs. Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.3e-29
Identity = 81/152 (53.29%), Postives = 96/152 (63.16%), Query Frame = 1


Query: 19  ALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFWKNNYMKRDPSAA 78
           ALN  +GSNKS ISKYIE+TY  LP    ++L  HLN MK SGEL F +NNYMK DP+A 
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 79  PRRGRGRPPKPKEQREP----------------PNAT-KAVKMKVSSGTGKPRGRPRKLP 138
           P+RGRGRPPKPK    P                PNA  K+ K K +  TG+PRGRP+K+ 
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPKAKATPATGRPRGRPKKVA 120

Query: 139 Q-PVTTTALPPPSGRPRGRPPKVKALLTEVSV 153
           + P   +     +GRPRGRPPKVK  LTEVSV
Sbjct: 121 RSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSV 150

[Close]

BLAST of CmaCh01G003760 vs. TrEMBL
Match: A0A0A0LCH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.5e-57
Identity = 126/178 (70.79%), Postives = 133/178 (74.72%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNS NGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPK--------------------PKEQRE 120
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK                    PK+   
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPNATKAVKMKVSSGTGKPRGRPRKLPQPVTTTALPPPSGRPRGRPPKVKALLTEVSV 153
           PP   K V+MKVSSGTGKPRGRPRK PQ  +T A P PSGRPRGRPPKVKA LTEVSV
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]

BLAST of CmaCh01G003760 vs. TrEMBL
Match: M5XB09_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.2e-43
Identity = 110/181 (60.77%), Postives = 125/181 (69.06%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MIL+AIEALN  NGSNKS+ISK+IESTY +LP GH+SLL+ HL
Sbjct: 1   MATEEVNKPLSLPPYPEMILKAIEALNEKNGSNKSSISKFIESTYGDLPAGHNSLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREP----------------PNA 120
           N MK SGELVFWKNNY K DP+A PRRGRGRPPKPK+   P                PNA
Sbjct: 61  NKMKDSGELVFWKNNYTKPDPNAPPRRGRGRPPKPKDSLPPDAVLGPTRPRGRPPKDPNA 120

Query: 121 T-KAVKMKVSSGTGKPRGRPRKLPQPV-----TTTALPPPSGRPRGRPPKVK-ALLTEVS 153
             K  K+KVSSG+GKPRGRPRK+ +P      + T      GRPRGRPPKVK +L  EVS
Sbjct: 121 PPKPPKVKVSSGSGKPRGRPRKMAKPTGGLSGSATVTDTMPGRPRGRPPKVKDSLSAEVS 180

[Close]

BLAST of CmaCh01G003760 vs. TrEMBL
Match: Q42461_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-42
Identity = 104/176 (59.09%), Postives = 122/176 (69.32%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+M+++A++ALN  +GSNKS ISKYIESTY  LP GH++LL  HL
Sbjct: 1   MATEEVNKPPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREP----------------PNA 120
           N MK SGELVF KNNYMK DP+A P+RGRGRPPKPK    P                PNA
Sbjct: 61  NKMKDSGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 T-KAVKMKVSSGTGKPRGRPRKLPQ-PVTTTALPPPSGRPRGRPPKVKALLTEVSV 153
             K+ K KVS+G+G+PRGRP+K+ + P      P PSGRPRGRPPKVK  LTEVSV
Sbjct: 121 PPKSPKTKVSTGSGRPRGRPKKIARSPAAVAPTPVPSGRPRGRPPKVKPQLTEVSV 176

[Close]

BLAST of CmaCh01G003760 vs. TrEMBL
Match: Q42492_CANGL (High mobility group protein OS=Canavalia gladiata PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.5e-41
Identity = 104/176 (59.09%), Postives = 120/176 (68.18%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPY +MI +A+++LN  NGSNKS ISKYIEST   LP GHS+LL  HL
Sbjct: 1   MATEEVNKPPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREP----------------PNA 120
           N MK SGELVF KNNYMK DP++ P+RGRGRPPKPK    P                PNA
Sbjct: 61  NKMKESGELVFLKNNYMKPDPTSPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNA 120

Query: 121 -TKAVKMKVSSGTGKPRGRPRKLPQPVTTTA-LPPPSGRPRGRPPKVKALLTEVSV 153
            TK+ K KVS+G+G+PRGRP+K+ +     A  P PSGRPRGRPPKVK  LTEVSV
Sbjct: 121 PTKSPKAKVSTGSGRPRGRPKKIARSAAVVAPTPGPSGRPRGRPPKVKPQLTEVSV 176

[Close]

BLAST of CmaCh01G003760 vs. TrEMBL
Match: A0A067KDV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13448 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.5e-41
Identity = 111/188 (59.04%), Postives = 125/188 (66.49%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MA EE      LPPYP+MIL AIEALN  NGSNK++ISKYIES Y  LP  H++LLT HL
Sbjct: 1   MAAEEVNRPPSLPPYPEMILAAIEALNEQNGSNKTSISKYIESKYGELPASHTTLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREP----------------PNA 120
           N MK +GELVFWKNNYMK DPSA PRRGRGRPPKPK+   P                PNA
Sbjct: 61  NRMKDTGELVFWKNNYMKPDPSAPPRRGRGRPPKPKDPSPPGAILAPARPRGRPPKDPNA 120

Query: 121 T-KAVKMKV-SSGTGKPRGRPRKLPQPV-------TTTALPPP----SGRPRGRPPKVK- 153
             K +K KV S+G+GKPRGRPRK+ +P        TTTA   P    +GRPRGRPPKVK 
Sbjct: 121 PPKPMKQKVTSTGSGKPRGRPRKMARPTGGMSGTSTTTATTVPMATGTGRPRGRPPKVKN 180

[Close]

BLAST of CmaCh01G003760 vs. TAIR10
Match: AT1G14900.1 (AT1G14900.1 high mobility group A)

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-32
Identity = 82/173 (47.40%), Postives = 104/173 (60.12%), Query Frame = 1


Query: 6   LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVF 65
           LPPYPQMI+ AIE+LN  NG NK+TI+K+IEST + LP  H +LL+ HLN MK +G+L+ 
Sbjct: 23  LPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIM 82

Query: 66  WKNNYMKRDPSAAPRRGRGRPPKPKEQRE---------------------------PPNA 125
            KNNYMK DP A P+RGRGRPPK K Q E                           P + 
Sbjct: 83  VKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKDP 142

Query: 126 TKAVKMKVSSGTGKPRGRPRKLPQPVT-TTALPPPSG------RPRGRPPKVK 145
           ++  + KV +G+G+PRGRP K P+  + T A P P+       R RGRPPKVK
Sbjct: 143 SEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of CmaCh01G003760 vs. TAIR10
Match: AT1G48620.1 (AT1G48620.1 high mobility group A5)

HSP 1 Score: 74.7 bits (182), Expect = 5.5e-14
Identity = 53/138 (38.41%), Postives = 64/138 (46.38%), Query Frame = 1


Query: 7   PPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFW 66
           PPY  MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLT HL  +K SG LV  
Sbjct: 76  PPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMV 135

Query: 67  KNNYMKRDPSAAPRRGRGRPPKPKEQREPPNATKAVKMKVSSGTGKPRGRPRKLPQPVTT 126
           K +Y        P      P       EPP +   V               + LP PV  
Sbjct: 136 KKSYKLASTPPPP-----PPTSVAPSLEPPRSDFIV------------NENQPLPDPVLA 195

Query: 127 TALPPPSGRPRGRPPKVK 145
           ++ P    R RGRPPK K
Sbjct: 196 SSTPQTIKRGRGRPPKAK 196

[Close]

BLAST of CmaCh01G003760 vs. TAIR10
Match: AT3G18035.1 (AT3G18035.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-10
Identity = 48/140 (34.29%), Postives = 62/140 (44.29%), Query Frame = 1


Query: 7   PPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGELVFW 66
           PPY +MI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLT HL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 67  KNNYMKRDPSAAPRRGRGRPPKPKEQREPPNATKAVKMKVSSGTGKPRGR--PRKLPQPV 126
           K +Y                 K      PP +        + G   PR          P+
Sbjct: 126 KKSY-----------------KIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPM 185

Query: 127 TTTALPPPSGRPRGRPPKVK 145
            + +   P  R RGRPPK K
Sbjct: 186 ASGSASQPLKRGRGRPPKPK 188

[Close]

BLAST of CmaCh01G003760 vs. TAIR10
Match: AT5G08780.1 (AT5G08780.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 3   TEELPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGE 62
           T + P Y  MI  AI  LN   G+++  IS++I+S Y+NLP  H++LL+ HL  +    E
Sbjct: 52  TPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKRE 111

Query: 63  LVFWKNN 70
           ++   NN
Sbjct: 112 ILCDCNN 118

[Close]

BLAST of CmaCh01G003760 vs. NCBI nr
Match: gi|659114297|ref|XP_008456999.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 127/178 (71.35%), Postives = 133/178 (74.72%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNS NGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPK--------------------PKEQRE 120
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK                    PK+   
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPNATKAVKMKVSSGTGKPRGRPRKLPQPVTTTALPPPSGRPRGRPPKVKALLTEVSV 153
           PP   K V+MKVSSGTGKPRGRPRK PQ  TT A P PSGRPRGRPPKVKA LTEVSV
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]

BLAST of CmaCh01G003760 vs. NCBI nr
Match: gi|449456239|ref|XP_004145857.1| (PREDICTED: HMG-Y-related protein A-like [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 6.4e-57
Identity = 126/178 (70.79%), Postives = 133/178 (74.72%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MAT+E      LPPYP+MI RAIEALNS NGSNKSTISKYIESTY NLPTGHSSLLT HL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPK--------------------PKEQRE 120
           NMMKASG+LVFWKNNYMKRDP+A PRRGRGRPPK                    PK+   
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPNATKAVKMKVSSGTGKPRGRPRKLPQPVTTTALPPPSGRPRGRPPKVKALLTEVSV 153
           PP   K V+MKVSSGTGKPRGRPRK PQ  +T A P PSGRPRGRPPKVKA LTEVSV
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSV 178

[Close]

BLAST of CmaCh01G003760 vs. NCBI nr
Match: gi|1009126639|ref|XP_015880263.1| (PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba])

HSP 1 Score: 189.9 bits (481), Expect = 3.3e-45
Identity = 105/172 (61.05%), Postives = 117/172 (68.02%), Query Frame = 1


Query: 4   EELPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHLNMMKASGEL 63
           + LPPYP+MI+RAIEALN  NGSNKSTISKYIESTY  LP GHS LL+ HLN MK SGEL
Sbjct: 10  QSLPPYPEMIIRAIEALNDKNGSNKSTISKYIESTYGELPAGHSQLLSHHLNRMKESGEL 69

Query: 64  VFWKNNYMKRDPSAAPRRGRGRPPKPKEQ-----------------REPPNATKAVKMKV 123
           VFWKNNY K DP+A PRRGRGRPPKPKE                  ++P    K  K+K+
Sbjct: 70  VFWKNNYTKADPNAPPRRGRGRPPKPKEPLPPGASLGPMRPRGRPPKDPDAPPKPTKLKI 129

Query: 124 SSGTGKPRGRPRKLPQPV------TTTALPPPSGRPRGRPPKVKALLTEVSV 153
           SSG+GKPRGRPRK+ +P       TTT      GR RGRPPKVK   TEVSV
Sbjct: 130 SSGSGKPRGRPRKMARPTGGLGASTTTMATATGGRGRGRPPKVKPTFTEVSV 181

[Close]

BLAST of CmaCh01G003760 vs. NCBI nr
Match: gi|595926770|ref|XP_007215046.1| (hypothetical protein PRUPE_ppa012096mg [Prunus persica])

HSP 1 Score: 183.3 bits (464), Expect = 3.1e-43
Identity = 110/181 (60.77%), Postives = 125/181 (69.06%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MIL+AIEALN  NGSNKS+ISK+IESTY +LP GH+SLL+ HL
Sbjct: 1   MATEEVNKPLSLPPYPEMILKAIEALNEKNGSNKSSISKFIESTYGDLPAGHNSLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREP----------------PNA 120
           N MK SGELVFWKNNY K DP+A PRRGRGRPPKPK+   P                PNA
Sbjct: 61  NKMKDSGELVFWKNNYTKPDPNAPPRRGRGRPPKPKDSLPPDAVLGPTRPRGRPPKDPNA 120

Query: 121 T-KAVKMKVSSGTGKPRGRPRKLPQPV-----TTTALPPPSGRPRGRPPKVK-ALLTEVS 153
             K  K+KVSSG+GKPRGRPRK+ +P      + T      GRPRGRPPKVK +L  EVS
Sbjct: 121 PPKPPKVKVSSGSGKPRGRPRKMAKPTGGLSGSATVTDTMPGRPRGRPPKVKDSLSAEVS 180

[Close]

BLAST of CmaCh01G003760 vs. NCBI nr
Match: gi|645246124|ref|XP_008229206.1| (PREDICTED: HMG-Y-related protein A-like [Prunus mume])

HSP 1 Score: 182.2 bits (461), Expect = 6.9e-43
Identity = 109/181 (60.22%), Postives = 125/181 (69.06%), Query Frame = 1


Query: 1   MATEE------LPPYPQMILRAIEALNSGNGSNKSTISKYIESTYENLPTGHSSLLTLHL 60
           MATEE      LPPYP+MIL+AIEALN  NGSNKS+ISK+IESTY +LP GH+SLL+ HL
Sbjct: 1   MATEEVNKPLSLPPYPEMILKAIEALNEKNGSNKSSISKFIESTYGDLPAGHNSLLSHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPSAAPRRGRGRPPKPKEQREP----------------PNA 120
           N MK SGEL+FWKNNY K DP+A PRRGRGRPPKPK+   P                PNA
Sbjct: 61  NKMKDSGELLFWKNNYTKPDPNAPPRRGRGRPPKPKDSLPPDAVLGPTRPRGRPPKDPNA 120

Query: 121 T-KAVKMKVSSGTGKPRGRPRKLPQPV-----TTTALPPPSGRPRGRPPKVK-ALLTEVS 153
             K  K+KVSSG+GKPRGRPRK+ +P      + T      GRPRGRPPKVK +L  EVS
Sbjct: 121 PPKPPKVKVSSGSGKPRGRPRKMAKPTGGLSGSATVTDTMPGRPRGRPPKVKDSLSAEVS 180

The following BLAST results are available for this feature:

BLAST of CmaCh01G003760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGYA_SOYBN	5.1e-38	55.11	HMG-Y-related protein A OS=Glycine max PE=2 SV=1	[more]
HMGYA_ARATH	3.6e-31	47.40	HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1	[more]
HMGYA_MAIZE	3.3e-29	52.32	HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1	[more]
HMGYB_SOYBN	3.3e-29	53.29	HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1	[more]

BLAST of CmaCh01G003760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCH9_CUCSA	4.5e-57	70.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284020 PE=3 SV=1	[more]
M5XB09_PRUPE	2.2e-43	60.77	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012096mg PE=3 SV=1	[more]
Q42461_CANGL	1.4e-42	59.09	High mobility group protein OS=Canavalia gladiata PE=2 SV=1	[more]
Q42492_CANGL	4.5e-41	59.09	High mobility group protein OS=Canavalia gladiata PE=2 SV=1	[more]
A0A067KDV9_JATCU	4.5e-41	59.04	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13448 PE=3 SV=1	[more]

BLAST of CmaCh01G003760 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14900.1	2.0e-32	47.40	high mobility group A	[more]
AT1G48620.1	5.5e-14	38.41	high mobility group A5	[more]
AT3G18035.1	2.2e-10	34.29	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	1.9e-06	38.81	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of CmaCh01G003760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114297\|ref\|XP_008456999.1\|	2.2e-57	71.35	PREDICTED: HMG-Y-related protein A-like [Cucumis melo]	[more]
gi\|449456239\|ref\|XP_004145857.1\|	6.4e-57	70.79	PREDICTED: HMG-Y-related protein A-like [Cucumis sativus]	[more]
gi\|1009126639\|ref\|XP_015880263.1\|	3.3e-45	61.05	PREDICTED: HMG-Y-related protein A-like [Ziziphus jujuba]	[more]
gi\|595926770\|ref\|XP_007215046.1\|	3.1e-43	60.77	hypothetical protein PRUPE_ppa012096mg [Prunus persica]	[more]
gi\|645246124\|ref\|XP_008229206.1\|	6.9e-43	60.22	PREDICTED: HMG-Y-related protein A-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000116	HMGA
IPR005818	Histone_H1/H5_H15
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR017956	AT_hook_DNA-bd_motif

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000785	chromatin
GO:0000786	nucleosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0006334	nucleosome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G003760.1	CmaCh01G003760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 123..142 score: 1.1E-5coord: 109..120 score: 1.1E-5coord: 78..90 score: 1.
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 7..67 score: 8.0
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 3..69 score: 3.9
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 5..74 score: 2
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 3..80 score: 1.9
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 3..81 score: 5.33
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 132..142 score: 2.1E-12coord: 109..120 score: 2.1E-12coord: 80..90 score: 2.1
IPR017956	AT hook, DNA-binding motif	PFAM	PF02178	AT_hook	coord: 81..88 score: 4.5coord: 134..144 score: 0.064coord: 111..119 score:
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 80..92 score: 19.0coord: 134..146 score: 0.64coord: 111..123 score:
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 6..150 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G003760	Cucsa.031270	Cucumber (Gy14) v1	cgycmaB0011
CmaCh01G003760	Cla013219	Watermelon (97103) v1	cmawmB434
CmaCh01G003760	ClCG05G011490	Watermelon (Charleston Gray)	cmawcgB407
CmaCh01G003760	CmoCh01G003930	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G003760	CmoCh14G008380	Cucurbita moschata (Rifu)	cmacmoB462
CmaCh01G003760	Lsi05G003580	Bottle gourd (USVL1VR-Ls)	cmalsiB440
CmaCh01G003760	Cp4.1LG03g05980	Cucurbita pepo (Zucchini)	cmacpeB494
CmaCh01G003760	Cp4.1LG02g16890	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G003760	Cla97C05G093550	Watermelon (97103) v2	cmawmbB473
CmaCh01G003760	Bhi01G001494	Wax gourd	cmawgoB0562
CmaCh01G003760	Carg22258	Silver-seed gourd	carcmaB0669
CmaCh01G003760	Carg07460	Silver-seed gourd	carcmaB1059

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh01G003760	CmaCh14G008230	Cucurbita maxima (Rimu)	cmacmaB255

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G003760	Cucumber (Chinese Long) v3	cmacucB0547
CmaCh01G003760	Wild cucumber (PI 183967)	cmacpiB458
CmaCh01G003760	Cucumber (Chinese Long) v2	cmacuB455
CmaCh01G003760	Melon (DHL92) v3.5.1	cmameB431
CmaCh01G003760	Cucumber (Gy14) v2	cgybcmaB368
CmaCh01G003760	Melon (DHL92) v3.6.1	cmamedB496