Lsi05G001840 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G001840
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMaternal effect embryo arrest 9
Locationchr05 : 2639341 .. 2639784 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCTCATCTCCCAGTTTACCTTCCTCTCCGATCAAGCTCTAAACGACAAGAATTTCGATCCCTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCTTACAAGTCCTGGGCCGCCATTGAGCTCCAACACCAGAACGAGGTTCAAGACGCCGAGATCGCCATGCAGCAGGCTGAGGATTATCTCGATTCCGTCATGGAAGACGCCATGGATGAGTTCAGACGGTTCGAGGAGGAGTTCGATCGGATGGCTGAAGCTGAACTCCAGGAACTCCTTGACAAATCTGAGAAGGCTCGCAAGATGGGCAGTTTGATGGAGAAGGCTGCGGCGGTTGCTTCCAAGAGGTACATGGAAGCAGCCATGAATTCCGCCACCGCTTCCATGAGATCCGCCTGGAAGGCTATTTCCTCCAATAAGGTTCATCCTTCTTGA

mRNA sequence

ATGGAAGCTCTCATCTCCCAGTTTACCTTCCTCTCCGATCAAGCTCTAAACGACAAGAATTTCGATCCCTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCTTACAAGTCCTGGGCCGCCATTGAGCTCCAACACCAGAACGAGGTTCAAGACGCCGAGATCGCCATGCAGCAGGCTGAGGATTATCTCGATTCCGTCATGGAAGACGCCATGGATGAGTTCAGACGGTTCGAGGAGGAGTTCGATCGGATGGCTGAAGCTGAACTCCAGGAACTCCTTGACAAATCTGAGAAGGCTCGCAAGATGGGCAGTTTGATGGAGAAGGCTGCGGCGGTTGCTTCCAAGAGGTACATGGAAGCAGCCATGAATTCCGCCACCGCTTCCATGAGATCCGCCTGGAAGGCTATTTCCTCCAATAAGGTTCATCCTTCTTGA

Coding sequence (CDS)

ATGGAAGCTCTCATCTCCCAGTTTACCTTCCTCTCCGATCAAGCTCTAAACGACAAGAATTTCGATCCCTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCTTACAAGTCCTGGGCCGCCATTGAGCTCCAACACCAGAACGAGGTTCAAGACGCCGAGATCGCCATGCAGCAGGCTGAGGATTATCTCGATTCCGTCATGGAAGACGCCATGGATGAGTTCAGACGGTTCGAGGAGGAGTTCGATCGGATGGCTGAAGCTGAACTCCAGGAACTCCTTGACAAATCTGAGAAGGCTCGCAAGATGGGCAGTTTGATGGAGAAGGCTGCGGCGGTTGCTTCCAAGAGGTACATGGAAGCAGCCATGAATTCCGCCACCGCTTCCATGAGATCCGCCTGGAAGGCTATTTCCTCCAATAAGGTTCATCCTTCTTGA

Protein sequence

MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRYMEAAMNSATASMRSAWKAISSNKVHPS
BLAST of Lsi05G001840 vs. TrEMBL
Match: A0A0A0LAB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214020 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.2e-68
Identity = 144/147 (97.96%), Postives = 147/147 (100.00%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALISQFTFLSDQAL+DKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ
Sbjct: 1   MEALISQFTFLSDQALHDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+LLDKSEKARKMGSLMEKAA+VASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

BLAST of Lsi05G001840 vs. TrEMBL
Match: A0A061DZ26_THECC (Maternal effect embryo arrest 9 OS=Theobroma cacao GN=TCM_006389 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-52
Identity = 112/147 (76.19%), Postives = 132/147 (89.80%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEAL+SQFTFLSDQAL DKNFDPSTIEDLMKLFEIE+YK+WAA+EL+ + EV++AE  MQ
Sbjct: 1   MEALLSQFTFLSDQALQDKNFDPSTIEDLMKLFEIESYKAWAAMELEQEEEVKEAETTMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVME AMDEFRRFEEE +R ++AEL  L + +E+ARKMG+LMEK A +ASK+Y
Sbjct: 61  QAEDYLDSVMESAMDEFRRFEEEMERRSKAELNGLEETAERARKMGNLMEKGATIASKKY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAA+NSATASM+SAWK +SSNKVHPS
Sbjct: 121 MEAAVNSATASMKSAWKGLSSNKVHPS 147

BLAST of Lsi05G001840 vs. TrEMBL
Match: A0A0D2Q5V4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G001000 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.5e-52
Identity = 111/147 (75.51%), Postives = 134/147 (91.16%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEAL+S+FTFLSDQAL DKNFDPS IEDLMKLFEIE+YK+WAA+EL+ + EV++AE +MQ
Sbjct: 1   MEALLSEFTFLSDQALQDKNFDPSNIEDLMKLFEIESYKAWAAMELEQEEEVKEAETSMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAE YLDSVME AMDEFRR EEE +RMA+AEL++L D ++KARKMG+LMEKAAA+ASK+Y
Sbjct: 61  QAEGYLDSVMEAAMDEFRRLEEEMERMAKAELKDLEDTADKARKMGNLMEKAAAIASKKY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           +EAA+NSATASM+SAWK +SS KVHPS
Sbjct: 121 VEAALNSATASMKSAWKGLSSKKVHPS 147

BLAST of Lsi05G001840 vs. TrEMBL
Match: A0A067KV72_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05035 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 7.1e-52
Identity = 112/147 (76.19%), Postives = 129/147 (87.76%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEAL+S FT LSDQAL DKNFDPS IEDLMKLFEIEAYKSWAA+EL+ + EV++AEIAM 
Sbjct: 1   MEALLSHFTLLSDQALQDKNFDPSAIEDLMKLFEIEAYKSWAAMELEQEKEVEEAEIAMN 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           +AEDYLDSVME AMDEFRRFEEE +RMA+AEL  L   ++ ARK+G LMEKAA +ASKRY
Sbjct: 61  KAEDYLDSVMESAMDEFRRFEEEMERMAKAELDSLEQTADNARKVGKLMEKAATIASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           +EAA+NSATASM+SAWK ISSNK+HPS
Sbjct: 121 IEAAVNSATASMKSAWKGISSNKIHPS 147

BLAST of Lsi05G001840 vs. TrEMBL
Match: A0A0L9VGM3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g271600 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.9e-51
Identity = 108/147 (73.47%), Postives = 131/147 (89.12%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEAL+SQFTFLS+QAL DKNFDPSTIEDLMKLFEIE+YK+WAA EL+   EV++AE  MQ
Sbjct: 1   MEALLSQFTFLSEQALQDKNFDPSTIEDLMKLFEIESYKAWAAAELEQDREVEEAEAGMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           +AE+YLDSVME AMDEFRRFEEE +RMA+ E++ L+  +E+ARKMG+LMEK A+VASK+Y
Sbjct: 61  EAEEYLDSVMETAMDEFRRFEEELERMAKDEMENLVQTAERARKMGNLMEKGASVASKKY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           +EAA+NSATASM+SAWK +SS KVHPS
Sbjct: 121 IEAALNSATASMKSAWKGLSSGKVHPS 147

BLAST of Lsi05G001840 vs. TAIR10
Match: AT1G60870.1 (AT1G60870.1 maternal effect embryo arrest 9)

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-40
Identity = 90/147 (61.22%), Postives = 116/147 (78.91%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALI  FT LSDQAL DK FDPS IEDLM+LFE+++YK+WAA+E + Q E+++AE +++
Sbjct: 1   MEALIHHFTLLSDQALVDKTFDPSRIEDLMRLFEVDSYKAWAALESEQQQELEEAEESLR 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           +AE  LD  ME  M+E+RR  EE +RM  AEL+EL +K+E AR+ G+LMEKAA VA+KR+
Sbjct: 61  EAELELDRDMEWGMEEYRRTLEEMERMEAAELKELEEKAETARRTGNLMEKAATVAAKRH 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           + AAM SA ASMRSAWK  + NKVHPS
Sbjct: 121 IAAAMGSAAASMRSAWKTAAGNKVHPS 147

BLAST of Lsi05G001840 vs. NCBI nr
Match: gi|449464480|ref|XP_004149957.1| (PREDICTED: uncharacterized protein LOC101218253 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 4.6e-68
Identity = 144/147 (97.96%), Postives = 147/147 (100.00%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEALISQFTFLSDQAL+DKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ
Sbjct: 1   MEALISQFTFLSDQALHDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+LLDKSEKARKMGSLMEKAA+VASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

BLAST of Lsi05G001840 vs. NCBI nr
Match: gi|1009150402|ref|XP_015893000.1| (PREDICTED: uncharacterized protein LOC107427163 [Ziziphus jujuba])

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-54
Identity = 113/147 (76.87%), Postives = 135/147 (91.84%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           ME+L+SQFT LS++AL DKNFDPST+EDLMKLFEIEAYKSWAA+ELQHQNEV++AE+AMQ
Sbjct: 1   MESLLSQFTILSNEALQDKNFDPSTVEDLMKLFEIEAYKSWAAMELQHQNEVKEAEVAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVME AMDEFRRFEEE +RMA+ EL  L++ +E AR+MG+ MEKAA +ASKRY
Sbjct: 61  QAEDYLDSVMESAMDEFRRFEEEMERMAKTELNSLVETAEGARRMGNFMEKAATIASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           +EAA+NSATASM+SAWK +S+NKVHPS
Sbjct: 121 IEAALNSATASMKSAWKGLSTNKVHPS 147

BLAST of Lsi05G001840 vs. NCBI nr
Match: gi|590683028|ref|XP_007041500.1| (Maternal effect embryo arrest 9 [Theobroma cacao])

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 112/147 (76.19%), Postives = 132/147 (89.80%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEAL+SQFTFLSDQAL DKNFDPSTIEDLMKLFEIE+YK+WAA+EL+ + EV++AE  MQ
Sbjct: 1   MEALLSQFTFLSDQALQDKNFDPSTIEDLMKLFEIESYKAWAAMELEQEEEVKEAETTMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVME AMDEFRRFEEE +R ++AEL  L + +E+ARKMG+LMEK A +ASK+Y
Sbjct: 61  QAEDYLDSVMESAMDEFRRFEEEMERRSKAELNGLEETAERARKMGNLMEKGATIASKKY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAA+NSATASM+SAWK +SSNKVHPS
Sbjct: 121 MEAAVNSATASMKSAWKGLSSNKVHPS 147

BLAST of Lsi05G001840 vs. NCBI nr
Match: gi|1021581615|ref|XP_016180185.1| (PREDICTED: uncharacterized protein LOC107622713 [Arachis ipaensis])

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 110/147 (74.83%), Postives = 134/147 (91.16%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEAL+SQFT LSD AL DKNFDPSTIEDLMKLFEIE+YK+WAA EL+ Q EV++AE++MQ
Sbjct: 1   MEALLSQFTLLSDHALQDKNFDPSTIEDLMKLFEIESYKAWAAAELEQQTEVEEAEVSMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           +AEDYLDSVME AMDEFRRFEEEF+ M++AE++ L++ +E ARKMG+LMEKAA++ASK+Y
Sbjct: 61  EAEDYLDSVMESAMDEFRRFEEEFESMSKAEMESLVNTAESARKMGNLMEKAASIASKKY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           +EAA+NSATASM+SAWK ISS KVHPS
Sbjct: 121 IEAALNSATASMKSAWKGISSGKVHPS 147

BLAST of Lsi05G001840 vs. NCBI nr
Match: gi|823129596|ref|XP_012449287.1| (PREDICTED: uncharacterized protein LOC105772529 [Gossypium raimondii])

HSP 1 Score: 211.8 bits (538), Expect = 7.8e-52
Identity = 111/147 (75.51%), Postives = 134/147 (91.16%), Query Frame = 1

Query: 1   MEALISQFTFLSDQALNDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60
           MEAL+S+FTFLSDQAL DKNFDPS IEDLMKLFEIE+YK+WAA+EL+ + EV++AE +MQ
Sbjct: 1   MEALLSEFTFLSDQALQDKNFDPSNIEDLMKLFEIESYKAWAAMELEQEEEVKEAETSMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELLDKSEKARKMGSLMEKAAAVASKRY 120
           QAE YLDSVME AMDEFRR EEE +RMA+AEL++L D ++KARKMG+LMEKAAA+ASK+Y
Sbjct: 61  QAEGYLDSVMEAAMDEFRRLEEEMERMAKAELKDLEDTADKARKMGNLMEKAAAIASKKY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           +EAA+NSATASM+SAWK +SS KVHPS
Sbjct: 121 VEAALNSATASMKSAWKGLSSKKVHPS 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LAB6_CUCSA3.2e-6897.96Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214020 PE=4 SV=1[more]
A0A061DZ26_THECC1.4e-5276.19Maternal effect embryo arrest 9 OS=Theobroma cacao GN=TCM_006389 PE=4 SV=1[more]
A0A0D2Q5V4_GOSRA5.5e-5275.51Uncharacterized protein OS=Gossypium raimondii GN=B456_002G001000 PE=4 SV=1[more]
A0A067KV72_JATCU7.1e-5276.19Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05035 PE=4 SV=1[more]
A0A0L9VGM3_PHAAN7.9e-5173.47Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g271600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G60870.11.9e-4061.22 maternal effect embryo arrest 9[more]
Match NameE-valueIdentityDescription
gi|449464480|ref|XP_004149957.1|4.6e-6897.96PREDICTED: uncharacterized protein LOC101218253 [Cucumis sativus][more]
gi|1009150402|ref|XP_015893000.1|2.2e-5476.87PREDICTED: uncharacterized protein LOC107427163 [Ziziphus jujuba][more]
gi|590683028|ref|XP_007041500.1|2.1e-5276.19Maternal effect embryo arrest 9 [Theobroma cacao][more]
gi|1021581615|ref|XP_016180185.1|2.1e-5274.83PREDICTED: uncharacterized protein LOC107622713 [Arachis ipaensis][more]
gi|823129596|ref|XP_012449287.1|7.8e-5275.51PREDICTED: uncharacterized protein LOC105772529 [Gossypium raimondii][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009555 pollen development
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G001840.1Lsi05G001840.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 52..90
scor
NoneNo IPR availablePANTHERPTHR37707FAMILY NOT NAMEDcoord: 2..147
score: 8.3
NoneNo IPR availablePANTHERPTHR37707:SF1MATERNAL EFFECT EMBRYO ARREST 9 PROTEINcoord: 2..147
score: 8.3