MELO3C019478 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019478
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Maternal effect embryo arrest 9
Location	chr6 : 10360190 .. 10360414 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGTTCAGACGGTTCGAAGAGGAGTTTGATCAGATGGCTAAAGCTGAGCTACAACAACTCCTTGATAAGTCTGAGAAGGCTCGCAAGATGGGTAGTTTGATGGAGAAAGCTGCGTCGGTTGCTTCTAAGAGGTACATGGAGGCAGCTATGAATTCTGCCACTGCTTCCATGAGATCTGCCTGGAAGGCTATTTCTTCCAATAAGGTTCATCCTTCTTGA

mRNA sequence

ATGGATGAGTTCAGACGGTTCGAAGAGGAGTTTGATCAGATGGCTAAAGCTGAGCTACAACAACTCCTTGATAAGTCTGAGAAGGCTCGCAAGATGGGTAGTTTGATGGAGAAAGCTGCGTCGGTTGCTTCTAAGAGGTACATGGAGGCAGCTATGAATTCTGCCACTGCTTCCATGAGATCTGCCTGGAAGGCTATTTCTTCCAATAAGGTTCATCCTTCTTGA

Coding sequence (CDS)

ATGGATGAGTTCAGACGGTTCGAAGAGGAGTTTGATCAGATGGCTAAAGCTGAGCTACAACAACTCCTTGATAAGTCTGAGAAGGCTCGCAAGATGGGTAGTTTGATGGAGAAAGCTGCGTCGGTTGCTTCTAAGAGGTACATGGAGGCAGCTATGAATTCTGCCACTGCTTCCATGAGATCTGCCTGGAAGGCTATTTCTTCCAATAAGGTTCATCCTTCTTGA

Protein sequence

MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMRSAWKAISSNKVHPS*

Homology

[Close]

BLAST of MELO3C019478 vs. TrEMBL
Match: A0A0A0LAB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214020 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.6e-31
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEEFD+MA+AELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR
Sbjct: 74  MDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 133

Query: 61  SAWKAISSNKVHPS 75
           SAWKAISSNKVHPS
Sbjct: 134 SAWKAISSNKVHPS 147

[Close]

BLAST of MELO3C019478 vs. TrEMBL
Match: A0A0D2Q5V4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G001000 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-22
Identity = 54/74 (72.97%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRR EEE ++MAKAEL+ L D ++KARKMG+LMEKAA++ASK+Y+EAA+NSATASM+
Sbjct: 74  MDEFRRLEEEMERMAKAELKDLEDTADKARKMGNLMEKAAAIASKKYVEAALNSATASMK 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK +SS KVHPS
Sbjct: 134 SAWKGLSSKKVHPS 147

[Close]

BLAST of MELO3C019478 vs. TrEMBL
Match: A0A067KV72_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05035 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-22
Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = 1


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEE ++MAKAEL  L   ++ ARK+G LMEKAA++ASKRY+EAA+NSATASM+
Sbjct: 74  MDEFRRFEEEMERMAKAELDSLEQTADNARKVGKLMEKAATIASKRYIEAAVNSATASMK 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK ISSNK+HPS
Sbjct: 134 SAWKGISSNKIHPS 147

[Close]

BLAST of MELO3C019478 vs. TrEMBL
Match: A0A0L9VGM3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g271600 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-22
Identity = 53/74 (71.62%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEE ++MAK E++ L+  +E+ARKMG+LMEK ASVASK+Y+EAA+NSATASM+
Sbjct: 74  MDEFRRFEEELERMAKDEMENLVQTAERARKMGNLMEKGASVASKKYIEAALNSATASMK 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK +SS KVHPS
Sbjct: 134 SAWKGLSSGKVHPS 147

[Close]

BLAST of MELO3C019478 vs. TrEMBL
Match: A0A061DZ26_THECC (Maternal effect embryo arrest 9 OS=Theobroma cacao GN=TCM_006389 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-22
Identity = 53/74 (71.62%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEE ++ +KAEL  L + +E+ARKMG+LMEK A++ASK+YMEAA+NSATASM+
Sbjct: 74  MDEFRRFEEEMERRSKAELNGLEETAERARKMGNLMEKGATIASKKYMEAAVNSATASMK 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK +SSNKVHPS
Sbjct: 134 SAWKGLSSNKVHPS 147

[Close]

BLAST of MELO3C019478 vs. TAIR10
Match: AT1G60870.1 (AT1G60870.1 maternal effect embryo arrest 9)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 1


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           M+E+RR  EE ++M  AEL++L +K+E AR+ G+LMEKAA+VA+KR++ AAM SA ASMR
Sbjct: 74  MEEYRRTLEEMERMEAAELKELEEKAETARRTGNLMEKAATVAAKRHIAAAMGSAAASMR 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK  + NKVHPS
Sbjct: 134 SAWKTAAGNKVHPS 147

[Close]

BLAST of MELO3C019478 vs. NCBI nr
Match: gi|659112437|ref|XP_008456220.1| (PREDICTED: uncharacterized protein LOC103496225 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 7.8e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
          MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR
Sbjct: 8  MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 67

Query: 61 SAWKAISSNKVHPS 75
          SAWKAISSNKVHPS
Sbjct: 68 SAWKAISSNKVHPS 81

[Close]

BLAST of MELO3C019478 vs. NCBI nr
Match: gi|449464480|ref|XP_004149957.1| (PREDICTED: uncharacterized protein LOC101218253 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 6.6e-31
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEEFD+MA+AELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR
Sbjct: 74  MDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 133

Query: 61  SAWKAISSNKVHPS 75
           SAWKAISSNKVHPS
Sbjct: 134 SAWKAISSNKVHPS 147

[Close]

BLAST of MELO3C019478 vs. NCBI nr
Match: gi|1021581615|ref|XP_016180185.1| (PREDICTED: uncharacterized protein LOC107622713 [Arachis ipaensis])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 55/74 (74.32%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEEF+ M+KAE++ L++ +E ARKMG+LMEKAAS+ASK+Y+EAA+NSATASM+
Sbjct: 74  MDEFRRFEEEFESMSKAEMESLVNTAESARKMGNLMEKAASIASKKYIEAALNSATASMK 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK ISS KVHPS
Sbjct: 134 SAWKGISSGKVHPS 147

[Close]

BLAST of MELO3C019478 vs. NCBI nr
Match: gi|1012251162|ref|XP_015943646.1| (PREDICTED: uncharacterized protein LOC107468801 [Arachis duranensis])

HSP 1 Score: 114.8 bits (286), Expect = 6.6e-23
Identity = 54/74 (72.97%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEE + M+KAE++ L++ +E ARKMG+LMEKAAS+ASK+Y+EAA+NSATASM+
Sbjct: 74  MDEFRRFEEELESMSKAEMESLVNTAESARKMGNLMEKAASIASKKYIEAALNSATASMK 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK ISS KVHPS
Sbjct: 134 SAWKGISSGKVHPS 147

[Close]

BLAST of MELO3C019478 vs. NCBI nr
Match: gi|1021531644|ref|XP_016162779.1| (PREDICTED: uncharacterized protein LOC107605413 [Arachis ipaensis])

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-22
Identity = 54/74 (72.97%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEE + M+KAE++ L++ +E ARKMG+LMEKAAS+ASK+Y+EAA+NSATASM+
Sbjct: 45  MDEFRRFEEELESMSKAEMESLVNTAEGARKMGNLMEKAASIASKKYIEAALNSATASMK 104

Query: 61  SAWKAISSNKVHPS 75
           SAWK ISS KVHPS
Sbjct: 105 SAWKGISSGKVHPS 118

The following BLAST results are available for this feature:

BLAST of MELO3C019478 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAB6_CUCSA	4.6e-31	97.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214020 PE=4 SV=1	[more]
A0A0D2Q5V4_GOSRA	1.0e-22	72.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G001000 PE=4 SV=1	[more]
A0A067KV72_JATCU	1.8e-22	72.97	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05035 PE=4 SV=1	[more]
A0A0L9VGM3_PHAAN	2.3e-22	71.62	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g271600 PE=4 SV=1	[more]
A0A061DZ26_THECC	3.9e-22	71.62	Maternal effect embryo arrest 9 OS=Theobroma cacao GN=TCM_006389 PE=4 SV=1	[more]

BLAST of MELO3C019478 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60870.1	1.2e-19	60.81	maternal effect embryo arrest 9	[more]

BLAST of MELO3C019478 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112437\|ref\|XP_008456220.1\|	7.8e-32	100.00	PREDICTED: uncharacterized protein LOC103496225 [Cucumis melo]	[more]
gi\|449464480\|ref\|XP_004149957.1\|	6.6e-31	97.30	PREDICTED: uncharacterized protein LOC101218253 [Cucumis sativus]	[more]
gi\|1021581615\|ref\|XP_016180185.1\|	1.3e-23	74.32	PREDICTED: uncharacterized protein LOC107622713 [Arachis ipaensis]	[more]
gi\|1012251162\|ref\|XP_015943646.1\|	6.6e-23	72.97	PREDICTED: uncharacterized protein LOC107468801 [Arachis duranensis]	[more]
gi\|1021531644\|ref\|XP_016162779.1\|	1.1e-22	72.97	PREDICTED: uncharacterized protein LOC107605413 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0009555	pollen development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019478T1	MELO3C019478T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37707	FAMILY NOT NAMED	coord: 1..74 score: 1.7
None	No IPR available	PANTHER	PTHR37707:SF1	MATERNAL EFFECT EMBRYO ARREST 9 PROTEIN	coord: 1..74 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019478	Csa3G214020	Cucumber (Chinese Long) v2	cumeB163
MELO3C019478	Cla013040	Watermelon (97103) v1	mewmB461
MELO3C019478	ClCG05G009710	Watermelon (Charleston Gray)	mewcgB427
MELO3C019478	Cla97C05G092070	Watermelon (97103) v2	mewmbB434
MELO3C019478	Bhi01G001221	Wax gourd	mewgoB530
MELO3C019478	CSPI03G18770	Wild cucumber (PI 183967)	cpimeB233
MELO3C019478	Cucsa.049570	Cucumber (Gy14) v1	cgymeB028
MELO3C019478	CmaCh16G003770	Cucurbita maxima (Rimu)	cmameB298
MELO3C019478	CmaCh04G005190	Cucurbita maxima (Rimu)	cmameB691
MELO3C019478	CmoCh04G005570	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019478	Lsi05G001840	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019478	Cp4.1LG01g02110	Cucurbita pepo (Zucchini)	cpemeB412
MELO3C019478	Carg26425	Silver-seed gourd	carmeB0064
MELO3C019478	Carg11303	Silver-seed gourd	carmeB0651
MELO3C019478	CsaV3_3G018850	Cucumber (Chinese Long) v3	cucmeB240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019478	Cucumber (Gy14) v1	cgymeB002
MELO3C019478	Cucurbita moschata (Rifu)	cmomeB290
MELO3C019478	Wild cucumber (PI 183967)	cpimeB241
MELO3C019478	Cucumber (Chinese Long) v2	cumeB166
MELO3C019478	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019478	Cucumber (Gy14) v2	cgybmeB204
MELO3C019478	Cucumber (Gy14) v2	cgybmeB210
MELO3C019478	Cucumber (Chinese Long) v3	cucmeB247