Carg26425 (gene) Silver-seed gourd

NameCarg26425
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMaternal effect embryo arrest
LocationCucurbita_argyrosperma_scaffold_457 : 44475 .. 44918 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCTCATCTCCCAGTTCACCTTCCTCTCCGATCGAGCTTTACAAGACAAGAATTTCGACCCTTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCCTACAACTCCTGGGCAGCCTTGGAGCTCCAACACCAGAACGAAACTCGAGACGCTGAGATCGCGATGCAACAGGCTGAGGATCATCTCGATTCCGTCATGGAAGATGCTATGGATGAGTTCAGAAAGTTCGAGGAGGAGTTCGATCGGATGGCCGAGGCTGAGCTTCAAGACCTCGTCGACAAGTCGGAGAAGGCTCGCAAGTTGGGCAGTTTGATGGAGAAAGCCGCCGCGGTTGCTTCCAAGAGGTACATGGAGGCGGCGATGAACTCGGCCACTGCTTCCATGAGATCTGCCTGGAAGGCCATTTCGTCCAATAAGGTTCATCCTTCTTGA

mRNA sequence

ATGGAAGCTCTCATCTCCCAGTTCACCTTCCTCTCCGATCGAGCTTTACAAGACAAGAATTTCGACCCTTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCCTACAACTCCTGGGCAGCCTTGGAGCTCCAACACCAGAACGAAACTCGAGACGCTGAGATCGCGATGCAACAGGCTGAGGATCATCTCGATTCCGTCATGGAAGATGCTATGGATGAGTTCAGAAAGTTCGAGGAGGAGTTCGATCGGATGGCCGAGGCTGAGCTTCAAGACCTCGTCGACAAGTCGGAGAAGGCTCGCAAGTTGGGCAGTTTGATGGAGAAAGCCGCCGCGGTTGCTTCCAAGAGGTACATGGAGGCGGCGATGAACTCGGCCACTGCTTCCATGAGATCTGCCTGGAAGGCCATTTCGTCCAATAAGGTTCATCCTTCTTGA

Coding sequence (CDS)

ATGGAAGCTCTCATCTCCCAGTTCACCTTCCTCTCCGATCGAGCTTTACAAGACAAGAATTTCGACCCTTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCCTACAACTCCTGGGCAGCCTTGGAGCTCCAACACCAGAACGAAACTCGAGACGCTGAGATCGCGATGCAACAGGCTGAGGATCATCTCGATTCCGTCATGGAAGATGCTATGGATGAGTTCAGAAAGTTCGAGGAGGAGTTCGATCGGATGGCCGAGGCTGAGCTTCAAGACCTCGTCGACAAGTCGGAGAAGGCTCGCAAGTTGGGCAGTTTGATGGAGAAAGCCGCCGCGGTTGCTTCCAAGAGGTACATGGAGGCGGCGATGAACTCGGCCACTGCTTCCATGAGATCTGCCTGGAAGGCCATTTCGTCCAATAAGGTTCATCCTTCTTGA

Protein sequence

MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQQAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRYMEAAMNSATASMRSAWKAISSNKVHPS
BLAST of Carg26425 vs. NCBI nr
Match: XP_022942791.1 (uncharacterized protein LOC111447720 [Cucurbita moschata] >XP_022942792.1 uncharacterized protein LOC111447720 [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 3.1e-68
Identity = 143/147 (97.28%), Postives = 147/147 (100.00%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ
Sbjct: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           QAED+LDSVMEDAMDEFR+FEEEFDRMAEAELQDL+DKSEKARK+GSLMEKAAAVASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

BLAST of Carg26425 vs. NCBI nr
Match: XP_022982937.1 (uncharacterized protein LOC111481629 isoform X1 [Cucurbita maxima] >XP_022982945.1 uncharacterized protein LOC111481629 isoform X2 [Cucurbita maxima])

HSP 1 Score: 263.1 bits (671), Expect = 5.8e-67
Identity = 141/147 (95.92%), Postives = 145/147 (98.64%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAM 
Sbjct: 40  MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMH 99

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           QAED+LDSVMEDA+DEFR+FEEEFDRMAE ELQDLVDKSEKARK+GSLMEKAAAVASKRY
Sbjct: 100 QAEDYLDSVMEDALDEFRRFEEEFDRMAEVELQDLVDKSEKARKMGSLMEKAAAVASKRY 159

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 160 MEAAMNSATASMRSAWKAISSNKVHPS 186

BLAST of Carg26425 vs. NCBI nr
Match: XP_023533822.1 (uncharacterized protein LOC111795549 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.1 bits (671), Expect = 5.8e-67
Identity = 141/147 (95.92%), Postives = 145/147 (98.64%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAA+ELQHQNE RDAEIAMQ
Sbjct: 90  MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAAMELQHQNEVRDAEIAMQ 149

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           QAED+LDSVMEDAMDEFR+FEEEFDRMAEAELQDLVDKSEKARK+G LMEKAAAVASKRY
Sbjct: 150 QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLVDKSEKARKMGRLMEKAAAVASKRY 209

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 210 MEAAMNSATASMRSAWKAISSNKVHPS 236

BLAST of Carg26425 vs. NCBI nr
Match: XP_023533813.1 (uncharacterized protein LOC111795549 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.6 bits (649), Expect = 2.0e-64
Identity = 137/143 (95.80%), Postives = 141/143 (98.60%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAA+ELQHQNE RDAEIAMQ
Sbjct: 90  MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAAMELQHQNEVRDAEIAMQ 149

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           QAED+LDSVMEDAMDEFR+FEEEFDRMAEAELQDLVDKSEKARK+G LMEKAAAVASKRY
Sbjct: 150 QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLVDKSEKARKMGRLMEKAAAVASKRY 209

Query: 121 MEAAMNSATASMRSAWKAISSNK 144
           MEAAMNSATASMRSAWKAISSNK
Sbjct: 210 MEAAMNSATASMRSAWKAISSNK 232

BLAST of Carg26425 vs. NCBI nr
Match: XP_004149957.1 (PREDICTED: uncharacterized protein LOC101218253 [Cucumis sativus] >KGN57562.1 hypothetical protein Csa_3G214020 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 6.0e-64
Identity = 135/147 (91.84%), Postives = 143/147 (97.28%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSD+AL DKNFDPSTIEDLMKLFEIEAY SWAA+ELQHQNE +DAEIAMQ
Sbjct: 1   MEALISQFTFLSDQALHDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           QAED+LDSVMEDAMDEFR+FEEEFDRMAEAELQ L+DKSEKARK+GSLMEKAA+VASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

BLAST of Carg26425 vs. TAIR10
Match: AT1G60870.1 (maternal effect embryo arrest 9)

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-31
Identity = 77/147 (52.38%), Postives = 98/147 (66.67%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALI  FT LSD+AL DK FDPS IEDLM+LFE+++Y +WAALE + Q E  +AE +++
Sbjct: 1   MEALIHHFTLLSDQALVDKTFDPSRIEDLMRLFEVDSYKAWAALESEQQQELEEAEESLR 60

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           +AE  LD  ME  M+E+R+  EE                    + G+LMEKAA VA+KR+
Sbjct: 61  EAELELDRDMEWGMEEYRRTLEEXXXXXXXXXXXXXXXXXXXXRTGNLMEKAATVAAKRH 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           + AAM SA ASMRSAWK  + NKVHPS
Sbjct: 121 IAAAMGSAAASMRSAWKTAAGNKVHPS 147

BLAST of Carg26425 vs. TrEMBL
Match: tr|A0A0A0LAB6|A0A0A0LAB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214020 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.9e-64
Identity = 135/147 (91.84%), Postives = 143/147 (97.28%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSD+AL DKNFDPSTIEDLMKLFEIEAY SWAA+ELQHQNE +DAEIAMQ
Sbjct: 1   MEALISQFTFLSDQALHDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           QAED+LDSVMEDAMDEFR+FEEEFDRMAEAELQ L+DKSEKARK+GSLMEKAA+VASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

BLAST of Carg26425 vs. TrEMBL
Match: tr|A0A1R3JBG5|A0A1R3JBG5_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17867 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.8e-53
Identity = 112/147 (76.19%), Postives = 134/147 (91.16%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEAL+SQFTFLSD+ALQDKNFDPSTIEDLMKLFEIE+Y +WAA+EL+ +NE ++AEI MQ
Sbjct: 1   MEALLSQFTFLSDQALQDKNFDPSTIEDLMKLFEIESYKAWAAMELEQENEVKEAEITMQ 60

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           QAED+LDSVME AMDEFR+FEEE DRMA+ EL  L  K+E+ARK+G+LMEKAA +ASK+Y
Sbjct: 61  QAEDYLDSVMESAMDEFRRFEEEMDRMAKDELDGLEQKAERARKMGNLMEKAATIASKKY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           +EAA+NSATASM+SAWK +SSNKVHPS
Sbjct: 121 IEAAVNSATASMKSAWKGLSSNKVHPS 147

BLAST of Carg26425 vs. TrEMBL
Match: tr|A0A1R3HYC2|A0A1R3HYC2_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_16194 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-51
Identity = 109/143 (76.22%), Postives = 131/143 (91.61%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEAL+SQFTFLSD+ALQDKNFDPSTIEDLMKLFEIE+Y +WAA+EL+ +NE ++AEI MQ
Sbjct: 1   MEALLSQFTFLSDQALQDKNFDPSTIEDLMKLFEIESYKAWAAMELEQENEVKEAEITMQ 60

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           QAED+LDSVME AMDEFR+FEEE DRMA+AEL  L  K+E+ARK+G+LMEKAA +ASK+Y
Sbjct: 61  QAEDYLDSVMESAMDEFRRFEEEMDRMAKAELDGLEQKAERARKMGNLMEKAATIASKKY 120

Query: 121 MEAAMNSATASMRSAWKAISSNK 144
           +EAA+NSATASM+SAWK +SSNK
Sbjct: 121 IEAAVNSATASMKSAWKGLSSNK 143

BLAST of Carg26425 vs. TrEMBL
Match: tr|A0A1U8MMD7|A0A1U8MMD7_GOSHI (uncharacterized protein LOC107936949 OS=Gossypium hirsutum OX=3635 GN=LOC107939215 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.9e-51
Identity = 108/147 (73.47%), Postives = 134/147 (91.16%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEAL+S+FTFLSD+ALQDKNFDPSTIEDLMKLFEIE+Y +WAA+EL+ + E ++AE +MQ
Sbjct: 1   MEALLSEFTFLSDQALQDKNFDPSTIEDLMKLFEIESYKAWAAMELEQEEEVKEAETSMQ 60

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           QAE +LDSVME AMDEFR+ EEE +RMA+AEL+DL D ++KARK+G+LMEKAAA+ASK+Y
Sbjct: 61  QAEGYLDSVMEAAMDEFRRLEEEMERMAKAELKDLEDTADKARKMGNLMEKAAAIASKKY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           +EAA+NSATASM+SAWK +SS KVHPS
Sbjct: 121 VEAALNSATASMKSAWKGLSSKKVHPS 147

BLAST of Carg26425 vs. TrEMBL
Match: tr|A0A2P5WGC0|A0A2P5WGC0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA30527 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.9e-51
Identity = 108/147 (73.47%), Postives = 134/147 (91.16%), Query Frame = 0

Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEAL+S+FTFLSD+ALQDKNFDPSTIEDLMKLFEIE+Y +WAA+EL+ + E ++AE +MQ
Sbjct: 1   MEALLSEFTFLSDQALQDKNFDPSTIEDLMKLFEIESYKAWAAMELEQEEEVKEAETSMQ 60

Query: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120
           QAE +LDSVME AMDEFR+ EEE +RMA+AEL+DL D ++KARK+G+LMEKAAA+ASK+Y
Sbjct: 61  QAEGYLDSVMEAAMDEFRRLEEEMERMAKAELKDLEDTADKARKMGNLMEKAAAIASKKY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           +EAA+NSATASM+SAWK +SS KVHPS
Sbjct: 121 VEAALNSATASMKSAWKGLSSKKVHPS 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022942791.13.1e-6897.28uncharacterized protein LOC111447720 [Cucurbita moschata] >XP_022942792.1 unchar... [more]
XP_022982937.15.8e-6795.92uncharacterized protein LOC111481629 isoform X1 [Cucurbita maxima] >XP_022982945... [more]
XP_023533822.15.8e-6795.92uncharacterized protein LOC111795549 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023533813.12.0e-6495.80uncharacterized protein LOC111795549 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_004149957.16.0e-6491.84PREDICTED: uncharacterized protein LOC101218253 [Cucumis sativus] >KGN57562.1 hy... [more]
Match NameE-valueIdentityDescription
AT1G60870.12.8e-3152.38maternal effect embryo arrest 9[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LAB6|A0A0A0LAB6_CUCSA3.9e-6491.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214020 PE=4 SV=1[more]
tr|A0A1R3JBG5|A0A1R3JBG5_9ROSI1.8e-5376.19Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17867 PE=4 SV=1[more]
tr|A0A1R3HYC2|A0A1R3HYC2_COCAP1.3e-5176.22Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_16194 PE=4 ... [more]
tr|A0A1U8MMD7|A0A1U8MMD7_GOSHI2.9e-5173.47uncharacterized protein LOC107936949 OS=Gossypium hirsutum OX=3635 GN=LOC1079392... [more]
tr|A0A2P5WGC0|A0A2P5WGC0_GOSBA2.9e-5173.47Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA30527 PE=4 SV... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26425-RACarg26425-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 70..90
NoneNo IPR availablePANTHERPTHR37707FAMILY NOT NAMEDcoord: 1..147