MELO3C019478.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019478.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Maternal effect embryo arrest 9
Location	chr06 : 11436910 .. 11437134 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGTTCAGACGGTTCGAAGAGGAGTTTGATCAGATGGCTAAAGCTGAGCTACAACAACTCCTTGATAAGTCTGAGAAGGCTCGCAAGATGGGTAGTTTGATGGAGAAAGCTGCGTCGGTTGCTTCTAAGAGGTACATGGAGGCAGCTATGAATTCTGCCACTGCTTCCATGAGATCTGCCTGGAAGGCTATTTCTTCCAATAAGGTTCATCCTTCTTGA

mRNA sequence

ATGGATGAGTTCAGACGGTTCGAAGAGGAGTTTGATCAGATGGCTAAAGCTGAGCTACAACAACTCCTTGATAAGTCTGAGAAGGCTCGCAAGATGGGTAGTTTGATGGAGAAAGCTGCGTCGGTTGCTTCTAAGAGGTACATGGAGGCAGCTATGAATTCTGCCACTGCTTCCATGAGATCTGCCTGGAAGGCTATTTCTTCCAATAAGGTTCATCCTTCTTGA

Coding sequence (CDS)

ATGGATGAGTTCAGACGGTTCGAAGAGGAGTTTGATCAGATGGCTAAAGCTGAGCTACAACAACTCCTTGATAAGTCTGAGAAGGCTCGCAAGATGGGTAGTTTGATGGAGAAAGCTGCGTCGGTTGCTTCTAAGAGGTACATGGAGGCAGCTATGAATTCTGCCACTGCTTCCATGAGATCTGCCTGGAAGGCTATTTCTTCCAATAAGGTTCATCCTTCTTGA

Protein sequence

MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMRSAWKAISSNKVHPS

Homology

[Close]

BLAST of MELO3C019478.2 vs. NCBI nr
Match: XP_016901903.1 (PREDICTED: uncharacterized protein LOC103496225 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 4.5e-28
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
          MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR
Sbjct: 8  MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 67

Query: 61 SAWKAISSNKVHPS 75
          SAWKAISSNKVHPS
Sbjct: 68 SAWKAISSNKVHPS 81

[Close]

BLAST of MELO3C019478.2 vs. NCBI nr
Match: XP_004149957.1 (PREDICTED: uncharacterized protein LOC101218253 [Cucumis sativus] >KGN57562.1 hypothetical protein Csa_3G214020 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 3.8e-27
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEEFD+MA+AELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR
Sbjct: 74  MDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 133

Query: 61  SAWKAISSNKVHPS 75
           SAWKAISSNKVHPS
Sbjct: 134 SAWKAISSNKVHPS 147

[Close]

BLAST of MELO3C019478.2 vs. NCBI nr
Match: XP_022922756.1 (uncharacterized protein LOC111430656 [Cucurbita moschata])

HSP 1 Score: 126.3 bits (316), Expect = 4.2e-26
Identity = 69/74 (93.24%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEEFD+MA+AELQ+L+DKSEKARKMGSLMEKAA+VASKRYMEAAMNSATASMR
Sbjct: 74  MDEFRRFEEEFDRMAEAELQELVDKSEKARKMGSLMEKAAAVASKRYMEAAMNSATASMR 133

Query: 61  SAWKAISSNKVHPS 75
           SAWKAISSNKVHPS
Sbjct: 134 SAWKAISSNKVHPS 147

[Close]

BLAST of MELO3C019478.2 vs. NCBI nr
Match: XP_023551868.1 (uncharacterized protein LOC111809710 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 4.2e-26
Identity = 69/74 (93.24%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEEFD+MA+AELQ+L+DKSEKARKMGSLMEKAA+VASKRYMEAAMNSATASMR
Sbjct: 74  MDEFRRFEEEFDRMAEAELQELVDKSEKARKMGSLMEKAAAVASKRYMEAAMNSATASMR 133

Query: 61  SAWKAISSNKVHPS 75
           SAWKAISSNKVHPS
Sbjct: 134 SAWKAISSNKVHPS 147

[Close]

BLAST of MELO3C019478.2 vs. NCBI nr
Match: XP_022942791.1 (uncharacterized protein LOC111447720 [Cucurbita moschata] >XP_022942792.1 uncharacterized protein LOC111447720 [Cucurbita moschata])

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-26
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEEFD+MA+AELQ L+DKSEKARKMGSLMEKAA+VASKRYMEAAMNSATASMR
Sbjct: 74  MDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRYMEAAMNSATASMR 133

Query: 61  SAWKAISSNKVHPS 75
           SAWKAISSNKVHPS
Sbjct: 134 SAWKAISSNKVHPS 147

[Close]

BLAST of MELO3C019478.2 vs. TAIR10
Match: AT1G60870.1 (maternal effect embryo arrest 9)

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-09
Identity = 36/74 (48.65%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           M+E+RR  EE                    + G+LMEKAA+VA+KR++ AAM SA ASMR
Sbjct: 74  MEEYRRTLEEXXXXXXXXXXXXXXXXXXXXRTGNLMEKAATVAAKRHIAAAMGSAAASMR 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK  + NKVHPS
Sbjct: 134 SAWKTAAGNKVHPS 147

[Close]

BLAST of MELO3C019478.2 vs. TrEMBL
Match: tr|A0A1S4E104|A0A1S4E104_CUCME (uncharacterized protein LOC103496225 OS=Cucumis melo OX=3656 GN=LOC103496225 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
          MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR
Sbjct: 8  MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 67

Query: 61 SAWKAISSNKVHPS 75
          SAWKAISSNKVHPS
Sbjct: 68 SAWKAISSNKVHPS 81

[Close]

BLAST of MELO3C019478.2 vs. TrEMBL
Match: tr|A0A0A0LAB6|A0A0A0LAB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214020 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-27
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEEFD+MA+AELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR
Sbjct: 74  MDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 133

Query: 61  SAWKAISSNKVHPS 75
           SAWKAISSNKVHPS
Sbjct: 134 SAWKAISSNKVHPS 147

[Close]

BLAST of MELO3C019478.2 vs. TrEMBL
Match: tr|A0A1R3JBG5|A0A1R3JBG5_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17867 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRRFEEE D+MAK EL  L  K+E+ARKMG+LMEKAA++ASK+Y+EAA+NSATASM+
Sbjct: 74  MDEFRRFEEEMDRMAKDELDGLEQKAERARKMGNLMEKAATIASKKYIEAAVNSATASMK 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK +SSNKVHPS
Sbjct: 134 SAWKGLSSNKVHPS 147

[Close]

BLAST of MELO3C019478.2 vs. TrEMBL
Match: tr|A0A1U8MMD7|A0A1U8MMD7_GOSHI (uncharacterized protein LOC107936949 OS=Gossypium hirsutum OX=3635 GN=LOC107939215 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-19
Identity = 54/74 (72.97%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRR EEE ++MAKAEL+ L D ++KARKMG+LMEKAA++ASK+Y+EAA+NSATASM+
Sbjct: 74  MDEFRRLEEEMERMAKAELKDLEDTADKARKMGNLMEKAAAIASKKYVEAALNSATASMK 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK +SS KVHPS
Sbjct: 134 SAWKGLSSKKVHPS 147

[Close]

BLAST of MELO3C019478.2 vs. TrEMBL
Match: tr|A0A1U8LLV0|A0A1U8LLV0_GOSHI (uncharacterized protein LOC107928798 OS=Gossypium hirsutum OX=3635 GN=LOC107928798 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-19
Identity = 54/74 (72.97%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MDEFRRFEEEFDQMAKAELQQLLDKSEKARKMGSLMEKAASVASKRYMEAAMNSATASMR 60
           MDEFRR EEE ++MAKAEL+ L D ++KARKMG+LMEKAA++ASK+Y+EAA+NSATASM+
Sbjct: 74  MDEFRRLEEEMERMAKAELKDLEDTADKARKMGNLMEKAAAIASKKYVEAALNSATASMK 133

Query: 61  SAWKAISSNKVHPS 75
           SAWK +SS KVHPS
Sbjct: 134 SAWKGLSSKKVHPS 147

The following BLAST results are available for this feature:

BLAST of MELO3C019478.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901903.1	4.5e-28	100.00	PREDICTED: uncharacterized protein LOC103496225 [Cucumis melo]	[more]
XP_004149957.1	3.8e-27	97.30	PREDICTED: uncharacterized protein LOC101218253 [Cucumis sativus] >KGN57562.1 hy...	[more]
XP_022922756.1	4.2e-26	93.24	uncharacterized protein LOC111430656 [Cucurbita moschata]	[more]
XP_023551868.1	4.2e-26	93.24	uncharacterized protein LOC111809710 [Cucurbita pepo subsp. pepo]	[more]
XP_022942791.1	5.5e-26	93.24	uncharacterized protein LOC111447720 [Cucurbita moschata] >XP_022942792.1 unchar...	[more]

BLAST of MELO3C019478.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60870.1	9.8e-09	48.65	maternal effect embryo arrest 9	[more]

BLAST of MELO3C019478.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C019478.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E104\|A0A1S4E104_CUCME	3.0e-28	100.00	uncharacterized protein LOC103496225 OS=Cucumis melo OX=3656 GN=LOC103496225 PE=...	[more]
tr\|A0A0A0LAB6\|A0A0A0LAB6_CUCSA	2.5e-27	97.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214020 PE=4 SV=1	[more]
tr\|A0A1R3JBG5\|A0A1R3JBG5_9ROSI	1.1e-19	75.68	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17867 PE=4 SV=1	[more]
tr\|A0A1U8MMD7\|A0A1U8MMD7_GOSHI	5.7e-19	72.97	uncharacterized protein LOC107936949 OS=Gossypium hirsutum OX=3635 GN=LOC1079392...	[more]
tr\|A0A1U8LLV0\|A0A1U8LLV0_GOSHI	5.7e-19	72.97	uncharacterized protein LOC107928798 OS=Gossypium hirsutum OX=3635 GN=LOC1079287...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009555	pollen development
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019478.2.1	MELO3C019478.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37707	FAMILY NOT NAMED	coord: 1..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019478.2	Csa3G214020	Cucumber (Chinese Long) v2	cumedB232
MELO3C019478.2	CSPI03G18770	Wild cucumber (PI 183967)	cpimedB233
MELO3C019478.2	Cucsa.049570	Cucumber (Gy14) v1	cgymedB026
MELO3C019478.2	CmaCh04G005190	Cucurbita maxima (Rimu)	cmamedB777
MELO3C019478.2	CmoCh04G005570	Cucurbita moschata (Rifu)	cmomedB774
MELO3C019478.2	Lsi05G001840	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C019478.2	Cp4.1LG01g02110	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C019478.2	Cla013040	Watermelon (97103) v1	medwmB448
MELO3C019478.2	ClCG05G009710	Watermelon (Charleston Gray)	medwcgB417
MELO3C019478.2	Cla97C05G092070	Watermelon (97103) v2	medwmbB424
MELO3C019478.2	Bhi01G001221	Wax gourd	medwgoB531
MELO3C019478.2	Carg26425	Silver-seed gourd	carmedB0064
MELO3C019478.2	Carg11303	Silver-seed gourd	carmedB0661
MELO3C019478.2	CsaV3_3G018850	Cucumber (Chinese Long) v3	cucmedB240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019478.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C019478.2	Cucumber (Gy14) v2	cgybmedB210
MELO3C019478.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C019478.2	Cucumber (Gy14) v1	cgymedB002
MELO3C019478.2	Cucurbita maxima (Rimu)	cmamedB346
MELO3C019478.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C019478.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C019478.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C019478.2	Cucumber (Chinese Long) v2	cumedB238