CmoCh07G008310 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G008310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Photosystem I reaction center subunit N
Location	Cmo_Chr07 : 3887517 .. 3888844 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCATGAATTCCAGCGTCTTGGCCTGCAACTACGCCATTTCAGGTGCTGGATCCGCCGAGCTTAACTCGAAACTCAGCGCCGTGACTTCTGTTGCGTCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCGATTAGGGCTCGACAGGCTAGGGTTCCTGAAGCTAAGAATGAAGGAAGGAGAACTGCGCTTCTCTTCCTTGGAGCTTCCCTCTTTGCTGCGGCTGCTGCTTCCTCCAACTCTTCGGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGTAAGCTACTCTTTGCTATCCAGATTATTCATGAACATTCAAATTGCTTTTATCATTTAGTTTTAGATCCTGTTTCGGTCTATGAACTCTATTCCAGCTAATATACTTTCAAATGCTATGTTTGGATTCTTTGTCTTTGCATATTAATGAGTCTTGTTCTTGATTCCTTGACTTAGCTCAAAAGTGTGTTTGGTTCTTGTTCTTGCTAAACTTCCATGGTACACGTAATATTTTAAGCCTATCGCTAGTAGATAATTGTCCTCTTTGGGCTTTTCCCTTCGATCTTTCCCTCAAGATTTTTAAAACGTGTCTGATAGGAAGAGGTTTCTACACCCTTTATAAAGAATGCTTCGTTCTCCTCTCCAACCGACGTGAGATGTCACGTACATTTCAAAAGTGAATGAAACAGAATTTAGTCAATTGGATGGTAAACCGATCATGTTCTTAACTCTGTTATTGCAACAGGAGCTGAATGACAAGAAAAGATTAGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGGTATGAACATTCATTGCTTAGTTATAATCAGCGTTGGCTGTGAAATTTTGAGTACAAGTAAATGTGTTTATGTTAAGCACTAAGTTAGTTCTCTGTCCTGCTTTTGATGAATGCAGAAAGTCCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAACAGAACAATTTATTGAAGTCTTTGTATCTAATTTTCAACTTTTAAGAAGTGTGAAATTTTATTTAGTCCAATTCCATTGCTTTCTTTCTTCTCTTTCAGACCAAAAGAAGCCAAATGAGAAAGTAGAAACCCTAGAAATCTATTGCTTTAGCTTTGTTAATGTTAATAATGTTCGGGAAGGTAACTAAAAGATATATTTAATAGTCCATTTGAGCCTAATTCAAT

mRNA sequence

ATGGCGACCATGAATTCCAGCGTCTTGGCCTGCAACTACGCCATTTCAGGTGCTGGATCCGCCGAGCTTAACTCGAAACTCAGCGCCGTGACTTCTGTTGCGTCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCGATTAGGGCTCGACAGGCTAGGGTTCCTGAAGCTAAGAATGAAGGAAGGAGAACTGCGCTTCTCTTCCTTGGAGCTTCCCTCTTTGCTGCGGCTGCTGCTTCCTCCAACTCTTCGGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAGCTGAATGACAAGAAAAGATTAGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGAAAGTCCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAACAGAACAATTTATTGAAGTCTTTGTATCTAATTTTCAACTTTTAAGAAGTGTGAAATTTTATTTAGTCCAATTCCATTGCTTTCTTTCTTCTCTTTCAGACCAAAAGAAGCCAAATGAGAAAGTAGAAACCCTAGAAATCTATTGCTTTAGCTTTGTTAATGTTAATAATGTTCGGGAAGGTAACTAAAAGATATATTTAATAGTCCATTTGAGCCTAATTCAAT

Coding sequence (CDS)

ATGGCGACCATGAATTCCAGCGTCTTGGCCTGCAACTACGCCATTTCAGGTGCTGGATCCGCCGAGCTTAACTCGAAACTCAGCGCCGTGACTTCTGTTGCGTCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCGATTAGGGCTCGACAGGCTAGGGTTCCTGAAGCTAAGAATGAAGGAAGGAGAACTGCGCTTCTCTTCCTTGGAGCTTCCCTCTTTGCTGCGGCTGCTGCTTCCTCCAACTCTTCGGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAGCTGAATGACAAGAAAAGATTAGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGAAAGTCCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Homology

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BLAST of CmoCh07G008310 vs. Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 224.6 bits (571), Expect = 8.5e-58
Identity = 119/173 (68.79%), Postives = 140/173 (80.92%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKL-PAIRARQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS ELN K+  V S    G     + P I+A++    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A++FL A+LF+ AA S+  SANAGVI+EYLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSA--SANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           +TVQFGSCKFPENFTGCQDLAKQKKVPFIS+D+ LECEGKDKYKCGSNVFWKW
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

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BLAST of CmoCh07G008310 vs. Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.8e-45
Identity = 95/124 (76.61%), Postives = 105/124 (84.68%), Query Frame = 1


Query: 48  ARQARVPEAKNEGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKR 107
           A   RV  A  + RR+ALL L A++FAA AAS+ S A A V +EYLEKSK NKELNDKKR
Sbjct: 24  AAAKRVQVAPAKDRRSALLGL-AAVFAATAASAGS-ARASVFDEYLEKSKLNKELNDKKR 83

Query: 108 LATSGANFARAYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNV 167
            ATSGANFARAYTVQFGSCKFP NFTGCQDLAKQKKVPFI+DDLE+ECEGK+K+KCGSNV
Sbjct: 84  AATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNV 143

Query: 168 FWKW 172
           FWKW
Sbjct: 144 FWKW 145

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BLAST of CmoCh07G008310 vs. Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.5e-41
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 1


Query: 79  SSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGSCKFPENFTGCQDL 138
           ++  SA A + +EYLEKSKANKELNDKKRLATSGANFARAYTV+FGSC+FP NFTGCQDL
Sbjct: 20  TTTGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDL 79

Query: 139 AKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           AKQKKVPFISDDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 80  AKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

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BLAST of CmoCh07G008310 vs. Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.7e-24
Identity = 69/122 (56.56%), Postives = 84/122 (68.85%), Query Frame = 1


Query: 48  ARQAR----VPEAKNEGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELN 107
           AR AR    V  A  + RR  LL LG  L AAA A +   ANAGV+E+ L KS ANK LN
Sbjct: 15  ARPARATTVVCRASAQSRRE-LLGLGVLLGAAALAPA---ANAGVVEDLLAKSAANKALN 74

Query: 108 DKKRLATSGANFARAYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKC 166
           +KKRLATS AN AR+ TV  G+C+FPENF GC++LA  K V +I++DL++ECEGKD   C
Sbjct: 75  NKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSC 132

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BLAST of CmoCh07G008310 vs. TrEMBL
Match: A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 2.9e-81
Identity = 156/171 (91.23%), Postives = 167/171 (97.66%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRARQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+A  SVASPGV GYKLPAIRA+Q +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALL+LGASLFAAAAA+SNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           V+FG+CKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

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BLAST of CmoCh07G008310 vs. TrEMBL
Match: G7JAX6_MEDTR (Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 9.7e-69
Identity = 139/175 (79.43%), Postives = 154/175 (88.00%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRARQARVPEAK--- 60
           MA MNSSVLAC+YAISG+   ELN+KL +V S ASPGVSG KLP I+A+Q R+PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NEGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
            ++GRR AL  L A+LF  A ++SNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTVQFG+CKFPENFTGCQDLAKQKKVPFI++DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

[Close]

BLAST of CmoCh07G008310 vs. TrEMBL
Match: F6I0D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.7e-68
Identity = 138/175 (78.86%), Postives = 157/175 (89.71%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRARQARVPEAK--- 60
           MA++NSSVLACNYAISGAG+ ELNSKL ++ S ASP V+G KLPAIRA+QARV ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NEGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
             EGRR AL++L A+LF  AAAS  SSANAGVI++YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAAS--SSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTVQFG+CKFPENFTGCQDLAK+KKVPF+S+DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

[Close]

BLAST of CmoCh07G008310 vs. TrEMBL
Match: W9QUC7_9ROSA (Photosystem I reaction center subunit N OS=Morus notabilis GN=L484_020701 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.2e-66
Identity = 136/172 (79.07%), Postives = 150/172 (87.21%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRARQARVPEAKNEG 60
           MA MNSSVLACNYAISG G  EL+SK   VTS   P V+  K+P IRA+QA+  + K EG
Sbjct: 1   MAAMNSSVLACNYAISGTGMTELSSK---VTSACPPVVAAQKMPVIRAQQAKNSDRKTEG 60

Query: 61  RRTALLFLGASLF-AAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAY 120
           RR A+L+L A+LF  AA+A+SNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAY
Sbjct: 61  RRAAMLYLAATLFTTAASAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAY 120

Query: 121 TVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           TV+FG+CKFPENFTGCQDLAKQKKVPFISDDLELECEGKDK+KCGSNVFWKW
Sbjct: 121 TVEFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKFKCGSNVFWKW 169

[Close]

BLAST of CmoCh07G008310 vs. TrEMBL
Match: A0A061DJ27_THECC (Photosystem I reaction center subunit PSI OS=Theobroma cacao GN=TCM_001498 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-66
Identity = 140/176 (79.55%), Postives = 153/176 (86.93%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSG-YKLPAIRARQARVPEAK-- 60
           MA MNSSVLACNYAISG GS ELN+KL++V SVASP VSG  KLP IRA+QA+V + +  
Sbjct: 1   MAAMNSSVLACNYAISGTGSFELNAKLASVPSVASPVVSGGRKLPVIRAQQAKVSDPEES 60

Query: 61  --NEGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANF 120
             +EGRR A+L+L A+LF  AAA   SSANA V +EYLEKSKANKELNDKKRLATSGANF
Sbjct: 61  RASEGRRAAMLYLAATLFTTAAA---SSANASVFDEYLEKSKANKELNDKKRLATSGANF 120

Query: 121 ARAYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           ARAYTVQFG+CKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 ARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 173

[Close]

BLAST of CmoCh07G008310 vs. TAIR10
Match: AT5G64040.2 (AT5G64040.2 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN))

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-40
Identity = 93/144 (64.58%), Postives = 112/144 (77.78%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKL-PAIRARQARVPEAK-N 60
           MA MNSSVL C+YAI+G+GS ELN K+  V S    G     + P I+A++    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  EGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 120
            GRR+A++FL A+LF+ AA S+  SANAGVI+EYLE+SK NKELNDKKRLATSGANFARA
Sbjct: 61  NGRRSAMVFLAATLFSTAAVSA--SANAGVIDEYLERSKTNKELNDKKRLATSGANFARA 120

Query: 121 YTVQFGSCKFPENFTGCQDLAKQK 143
           +TVQFGSCKFPENFTGCQDLAKQK
Sbjct: 121 FTVQFGSCKFPENFTGCQDLAKQK 142

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BLAST of CmoCh07G008310 vs. NCBI nr
Match: gi|659080932|ref|XP_008441057.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo])

HSP 1 Score: 313.5 bits (802), Expect = 2.2e-82
Identity = 159/171 (92.98%), Postives = 169/171 (98.83%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRARQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+AV SVASPGV GYKLPAIRA+QARVPEAKNEG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALL+LGA+LFAAAAA+SNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           V+FG+CKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of CmoCh07G008310 vs. NCBI nr
Match: gi|449461859|ref|XP_004148659.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 4.2e-81
Identity = 156/171 (91.23%), Postives = 167/171 (97.66%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRARQARVPEAKNEG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+A  SVASPGV GYKLPAIRA+Q +VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYT 120
           RRTALL+LGASLFAAAAA+SNSSANAGVIE+YLEKSKANKELNDKKRLATSGANFARAYT
Sbjct: 61  RRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYT 120

Query: 121 VQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           V+FG+CKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDKYKCGSNVFWKW
Sbjct: 121 VEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of CmoCh07G008310 vs. NCBI nr
Match: gi|357464531|ref|XP_003602547.1| (photosystem I reaction center subunit N [Medicago truncatula])

HSP 1 Score: 267.7 bits (683), Expect = 1.4e-68
Identity = 139/175 (79.43%), Postives = 154/175 (88.00%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRARQARVPEAK--- 60
           MA MNSSVLAC+YAISG+   ELN+KL +V S ASPGVSG KLP I+A+Q R+PEAK   
Sbjct: 1   MAAMNSSVLACSYAISGS---ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESR 60

Query: 61  -NEGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
            ++GRR AL  L A+LF  A ++SNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  ASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTVQFG+CKFPENFTGCQDLAKQKKVPFI++DLELECEGKDKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

[Close]

BLAST of CmoCh07G008310 vs. NCBI nr
Match: gi|359476926|ref|XP_003631913.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifera])

HSP 1 Score: 265.8 bits (678), Expect = 5.3e-68
Identity = 138/175 (78.86%), Postives = 157/175 (89.71%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRARQARVPEAK--- 60
           MA++NSSVLACNYAISGAG+ ELNSKL ++ S ASP V+G KLPAIRA+QARV ++K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 61  -NEGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFA 120
             EGRR AL++L A+LF  AAAS  SSANAGVI++YLEKSKANKELNDKKRLATSGANFA
Sbjct: 61  AGEGRRAALVYLAATLFTTAAAS--SSANAGVIDDYLEKSKANKELNDKKRLATSGANFA 120

Query: 121 RAYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           RAYTVQFG+CKFPENFTGCQDLAK+KKVPF+S+DLELECEG+DKYKCGSNVFWKW
Sbjct: 121 RAYTVQFGTCKFPENFTGCQDLAKKKKVPFLSEDLELECEGRDKYKCGSNVFWKW 173

[Close]

BLAST of CmoCh07G008310 vs. NCBI nr
Match: gi|743861697|ref|XP_011031185.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Populus euphratica])

HSP 1 Score: 262.3 bits (669), Expect = 5.9e-67
Identity = 138/174 (79.31%), Postives = 154/174 (88.51%), Query Frame = 1


Query: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRARQARVPEAK--- 60
           MA MNSSVLACNYAISG GS+ELN+K+ ++ +VASP VSG KLP IRA+QAR    +   
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKIVSMPAVASPVVSGPKLPVIRAQQARADSKEMKA 60

Query: 61  NEGRRTALLFLGASLFAAAAASSNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFAR 120
           +EGRR AL++L A+LF +AAA+  SSANAGVIE+YLEKSKANKELNDKKRLATSGANFAR
Sbjct: 61  SEGRRDALVYLAATLFTSAAAA--SSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 120

Query: 121 AYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 172
           AYTVQFG+CKFPENFTGCQDLAKQKKVPFISDDL LECEGKDKYKCGSNVFWKW
Sbjct: 121 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 172

The following BLAST results are available for this feature:

BLAST of CmoCh07G008310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAN_ARATH	8.5e-58	68.79	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana G...	[more]
PSAN_HORVU	4.8e-45	76.61	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSA...	[more]
PSAN_MAIZE	1.5e-41	83.87	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN...	[more]
PSAN_VOLCA	4.7e-24	56.56	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN...	[more]

BLAST of CmoCh07G008310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFM1_CUCSA	2.9e-81	91.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1	[more]
G7JAX6_MEDTR	9.7e-69	79.43	Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 P...	[more]
F6I0D9_VITVI	3.7e-68	78.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=...	[more]
W9QUC7_9ROSA	1.2e-66	79.07	Photosystem I reaction center subunit N OS=Morus notabilis GN=L484_020701 PE=4 S...	[more]
A0A061DJ27_THECC	1.6e-66	79.55	Photosystem I reaction center subunit PSI OS=Theobroma cacao GN=TCM_001498 PE=4 ...	[more]

BLAST of CmoCh07G008310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64040.2	1.7e-40	64.58	photosystem I reaction center subunit PSI-N, chloroplast, putative /...	[more]

BLAST of CmoCh07G008310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080932\|ref\|XP_008441057.1\|	2.2e-82	92.98	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]	[more]
gi\|449461859\|ref\|XP_004148659.1\|	4.2e-81	91.23	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativ...	[more]
gi\|357464531\|ref\|XP_003602547.1\|	1.4e-68	79.43	photosystem I reaction center subunit N [Medicago truncatula]	[more]
gi\|359476926\|ref\|XP_003631913.1\|	5.3e-68	78.86	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifer...	[more]
gi\|743861697\|ref\|XP_011031185.1\|	5.9e-67	79.31	PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Populus ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008796	PSAN

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G008310.1	CmoCh07G008310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	GENE3D	G3DSA:4.10.1190.10		coord: 87..171 score: 4.0
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 45..171 score: 6.1
None	No IPR available	PANTHER	PTHR36814	FAMILY NOT NAMED	coord: 2..171 score: 2.9
None	No IPR available	PANTHER	PTHR36814:SF1	PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC	coord: 2..171 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G008310	Cucsa.100880	Cucumber (Gy14) v1	cgycmoB0233
CmoCh07G008310	CmaCh03G010990	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G008310	CmaCh07G008060	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G008310	Cla008429	Watermelon (97103) v1	cmowmB814
CmoCh07G008310	Csa6G483300	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G008310	MELO3C008060	Melon (DHL92) v3.5.1	cmomeB783
CmoCh07G008310	ClCG01G015380	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G008310	CSPI06G26390	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G008310	Lsi01G011580	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G008310	Cp4.1LG10g03660	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G008310	Cp4.1LG19g12170	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G008310	MELO3C008060.2	Melon (DHL92) v3.6.1	cmomedB890
CmoCh07G008310	CsaV3_6G041600	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G008310	Cla97C01G014340	Watermelon (97103) v2	cmowmbB849
CmoCh07G008310	Bhi03G001038	Wax gourd	cmowgoB1066
CmoCh07G008310	CsGy6G025880	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G008310	Carg05317	Silver-seed gourd	carcmoB1100
CmoCh07G008310	Carg10530	Silver-seed gourd	carcmoB0338

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G008310	CmoCh03G010840	Cucurbita moschata (Rifu)	cmocmoB455

The following block(s) are covering this gene:

None