CmaCh06G015950 (gene) Cucurbita maxima (Rimu)

NameCmaCh06G015950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionGenomic DNA, chromosome 3, P1 clone: MKP6
LocationCma_Chr06 : 9945376 .. 9945606 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGCTTCTCAATTTGCAGCATCTTTAAAAGCTGTTGCTTTTCAAAAGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATCGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

mRNA sequence

ATGAAATGCTTCTCAATTTGCAGCATCTTTAAAAGCTGTTGCTTTTCAAAAGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATCGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

Coding sequence (CDS)

ATGAAATGCTTCTCAATTTGCAGCATCTTTAAAAGCTGTTGCTTTTCAAAAGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATCGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

Protein sequence

MKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRKASAFIARFYDARVSDPERQTLAV
BLAST of CmaCh06G015950 vs. TrEMBL
Match: A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-18
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1

Query: 18 GGRDEG-------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 77
          GGRD G       + D+SGEIRRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSD
Sbjct: 2  GGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 61

BLAST of CmaCh06G015950 vs. TrEMBL
Match: W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-18
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1

Query: 4  FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGIDRKASAFIARFY 63
          FS+CSIF S CFS   RD+   +E   IRRR+ PSDED   W+AEPGIDRKASAFIARFY
Sbjct: 12 FSLCSIF-SACFSSSSRDDTNSEEGVYIRRRICPSDEDRGGWIAEPGIDRKASAFIARFY 71

Query: 64 DARVSDPERQTLAV 77
          ++RVSDPERQTLAV
Sbjct: 72 ESRVSDPERQTLAV 84

BLAST of CmaCh06G015950 vs. TrEMBL
Match: E5GC50_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-18
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1

Query: 18 GGRDEG------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSDP 77
          GGRD G      + D+SGE+RRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSDP
Sbjct: 2  GGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDP 61

BLAST of CmaCh06G015950 vs. TrEMBL
Match: B9HXC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s00650g PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 51/74 (68.92%), Postives = 53/74 (71.62%), Query Frame = 1

Query: 4  FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDED-TRWVAEPGIDRKASAFIARFY 63
          FSI SIFKSCC+S G  D     E G   RR  PSDED  RWV EPGID KASAFIARFY
Sbjct: 15 FSIFSIFKSCCYSSGSDD---MSEDGYYVRRACPSDEDGRRWVGEPGIDGKASAFIARFY 74

Query: 64 DARVSDPERQTLAV 77
            RVSDPERQTLA+
Sbjct: 75 ATRVSDPERQTLAL 85

BLAST of CmaCh06G015950 vs. TrEMBL
Match: A0A067K878_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19109 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.1e-15
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1

Query: 3  CFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDED-TRWVAEPGIDRKASAFIARF 62
          CFS+ +IFK+CC S G  D     E G   RR++PSDED  RW+ +PGID +ASAFIARF
Sbjct: 8  CFSMLNIFKACC-SHGSDDIS---EDGFYIRRIYPSDEDGRRWIGDPGIDGRASAFIARF 67

Query: 63 YDARVSDPERQTLAV 77
          Y++RVSDPERQTLA+
Sbjct: 68 YESRVSDPERQTLAL 78

BLAST of CmaCh06G015950 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-13
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1

Query: 2  KCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGIDRKASAFIAR 61
          K FS+ S FK+    +   D G WD+ G  R+ M  SDED R WVAEPGIDRKASAFIA+
Sbjct: 11 KRFSLFSFFKTRRSHRVEAD-GSWDDFGYTRKAM-ASDEDKRYWVAEPGIDRKASAFIAK 70

Query: 62 FYDARVSDPERQTLA 76
          F+  RVS+ ERQTL+
Sbjct: 71 FHATRVSESERQTLS 83

BLAST of CmaCh06G015950 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 9.7e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1

Query: 33 RRMWPSDEDTR-WVAEPGIDRKASAFIARFYDARVSDPERQTL 75
          R+ W SDED R WVAEPGIDRKASAFIA+F+ +RVS+ ERQTL
Sbjct: 24 RKAWASDEDKRYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

BLAST of CmaCh06G015950 vs. NCBI nr
Match: gi|659077069|ref|XP_008439016.1| (PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-26
Identity = 61/84 (72.62%), Postives = 69/84 (82.14%), Query Frame = 1

Query: 1  MKCFSICSIFKSCCFSKGGRDEG------YWDESGEIRRRMWPSDED--TRWVAEPGIDR 60
          +KCFS C I KSCCF  GGRD G      + D+SGE+RRRMWPSDED  +RWVAEPGIDR
Sbjct: 8  LKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDR 67

Query: 61 KASAFIARFYDARVSDPERQTLAV 77
          KASAFIARFY+ARVSDPERQTL++
Sbjct: 68 KASAFIARFYEARVSDPERQTLSL 91

BLAST of CmaCh06G015950 vs. NCBI nr
Match: gi|700202083|gb|KGN57216.1| (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-18
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1

Query: 18 GGRDEG-------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 77
          GGRD G       + D+SGEIRRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSD
Sbjct: 2  GGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 61

BLAST of CmaCh06G015950 vs. NCBI nr
Match: gi|703107460|ref|XP_010098752.1| (hypothetical protein L484_026133 [Morus notabilis])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1

Query: 4  FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGIDRKASAFIARFY 63
          FS+CSIF S CFS   RD+   +E   IRRR+ PSDED   W+AEPGIDRKASAFIARFY
Sbjct: 12 FSLCSIF-SACFSSSSRDDTNSEEGVYIRRRICPSDEDRGGWIAEPGIDRKASAFIARFY 71

Query: 64 DARVSDPERQTLAV 77
          ++RVSDPERQTLAV
Sbjct: 72 ESRVSDPERQTLAV 84

BLAST of CmaCh06G015950 vs. NCBI nr
Match: gi|307136210|gb|ADN34048.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-18
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1

Query: 18 GGRDEG------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSDP 77
          GGRD G      + D+SGE+RRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSDP
Sbjct: 2  GGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDP 61

BLAST of CmaCh06G015950 vs. NCBI nr
Match: gi|224106998|ref|XP_002314338.1| (hypothetical protein POPTR_0010s00650g [Populus trichocarpa])

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-16
Identity = 51/74 (68.92%), Postives = 53/74 (71.62%), Query Frame = 1

Query: 4  FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDED-TRWVAEPGIDRKASAFIARFY 63
          FSI SIFKSCC+S G  D     E G   RR  PSDED  RWV EPGID KASAFIARFY
Sbjct: 15 FSIFSIFKSCCYSSGSDD---MSEDGYYVRRACPSDEDGRRWVGEPGIDGKASAFIARFY 74

Query: 64 DARVSDPERQTLAV 77
            RVSDPERQTLA+
Sbjct: 75 ATRVSDPERQTLAL 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LAW1_CUCSA1.6e-1875.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1[more]
W9RIP1_9ROSA2.0e-1870.27Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1[more]
E5GC50_CUCME2.7e-1874.63Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
B9HXC1_POPTR1.5e-1668.92Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s00650g PE=4 SV=1[more]
A0A067K878_JATCU6.1e-1561.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19109 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G05858.12.3e-1357.33 unknown protein[more]
AT5G26620.19.7e-1274.42 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659077069|ref|XP_008439016.1|2.9e-2672.62PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo][more]
gi|700202083|gb|KGN57216.1|2.2e-1875.00hypothetical protein Csa_3G171730 [Cucumis sativus][more]
gi|703107460|ref|XP_010098752.1|2.9e-1870.27hypothetical protein L484_026133 [Morus notabilis][more]
gi|307136210|gb|ADN34048.1|3.8e-1874.63hypothetical protein [Cucumis melo subsp. melo][more]
gi|224106998|ref|XP_002314338.1|2.1e-1668.92hypothetical protein POPTR_0010s00650g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G015950.1CmaCh06G015950.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511FAMILY NOT NAMEDcoord: 4..75
score: 6.5