MELO3C025540.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025540.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	NADH-ubiquinone oxidoreductase subunit
Location	chr12 : 13833075 .. 13833825 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGTCTTCAACCTCAACGAGTCGCCCAAGCGAGTTTTAGTAGAGAGATAGAGAGAGAGAGAGAGAGAGCGGCCGAGATCAGCAAGCTTTAGCTCCCGAGAAGACAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCGGTAATAGATCGGAACCCTCCATTCACTAAAGTTGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCTGGTATCATTTCTTTCTTCCTTTCCTTTTTTTTTCTTTTTTTATCTTCCATTTTGTTGCACCATCTGGAAAATCTCTTCCCCTGTCTCTGCGTTTTAGGGATTAAGCCCGGGATTAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGGTAGCTCGTTATAAGAAATAAGATTGTGCGGTTTAGGGTTTTTTCTTTTTCTCTTTTGCTTTGTTTTTCTCAAATTTGAGTTCTAGTTGTGGACATTTTCACGATGTTTCAATTATTAAACGTGCAACAGAATTGTATCAATAAGCAAATTGAAATTTCACTGTTTTCTGTTTTACCCATTTTTCGTCTAAATGAAATAGTTGAAAACTTACATGATTTCTTTGCTTTTGATCAATAAAAAAAGGTGAACCATTAAGGGATTTGG

mRNA sequence

ATCGTCTTCAACCTCAACGAGTCGCCCAAGCGAGTTTTAGTAGAGAGATAGAGAGAGAGAGAGAGAGAGCGGCCGAGATCAGCAAGCTTTAGCTCCCGAGAAGACAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCGGTAATAGATCGGAACCCTCCATTCACTAAAGTTGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCTGGGATTAAGCCCGGGATTAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGGTAGCTCGTTATAAGAAATAAGATTGTGCGGTTTAGGGTTTTTTCTTTTTCTCTTTTGCTTTGTTTTTCTCAAATTTGAGTTCTAGTTGTGGACATTTTCACGATGTTTCAATTATTAAACGTGCAACAGAATTGTATCAATAAGCAAATTGAAATTTCACTGTTTTCTGTTTTACCCATTTTTCGTCTAAATGAAATAGTTGAAAACTTACATGATTTCTTTGCTTTTGATCAATAAAAAAAGGTGAACCATTAAGGGATTTGG

Coding sequence (CDS)

ATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCGGTAATAGATCGGAACCCTCCATTCACTAAAGTTGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCTGGGATTAAGCCCGGGATTAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGGTAGCTCGTTATAAGAAATAA

Protein sequence

MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK

Homology

[Close]

BLAST of MELO3C025540.2 vs. NCBI nr
Match: XP_008463609.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo])

HSP 1 Score: 206.1 bits (523), Expect = 5.7e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of MELO3C025540.2 vs. NCBI nr
Match: KGN65035.1 (hypothetical protein Csa_1G181470 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 7.4e-50
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of MELO3C025540.2 vs. NCBI nr
Match: XP_011654950.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 7.4e-50
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of MELO3C025540.2 vs. NCBI nr
Match: XP_022142552.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925305.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023001508.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_022966760.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023541604.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 1.7e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]

BLAST of MELO3C025540.2 vs. NCBI nr
Match: XP_022927362.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023520383.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.8 bits (517), Expect = 2.8e-49
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 100

[Close]

BLAST of MELO3C025540.2 vs. TAIR10
Match: AT4G16450.1 (unknown protein)

HSP 1 Score: 183.7 bits (465), Expect = 5.5e-47
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

[Close]

BLAST of MELO3C025540.2 vs. TrEMBL
Match: tr|A0A1S3CJL9|A0A1S3CJL9_CUCME (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103501718 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.8e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of MELO3C025540.2 vs. TrEMBL
Match: tr|A0A0A0LT27|A0A0A0LT27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.9e-50
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of MELO3C025540.2 vs. TrEMBL
Match: tr|C6SY14|C6SY14_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100819728 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.8e-48
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of MELO3C025540.2 vs. TrEMBL
Match: tr|A0A151T6J4|A0A151T6J4_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_017204 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.8e-48
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of MELO3C025540.2 vs. TrEMBL
Match: tr|A0A0D2U5W6|A0A0D2U5W6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G249300 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.3e-47
Identity = 94/100 (94.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITAS KPEYPVIDRNPPFTKVVGNF+TLDYLRF TITGVSVTVGYLSGIKPG++GP
Sbjct: 1   MNTDITASAKPEYPVIDRNPPFTKVVGNFNTLDYLRFTTITGVSVTVGYLSGIKPGLKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARY+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYRK 100

The following BLAST results are available for this feature:

BLAST of MELO3C025540.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463609.1	5.7e-50	100.00	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo]	[more]
KGN65035.1	7.4e-50	99.00	hypothetical protein Csa_1G181470 [Cucumis sativus]	[more]
XP_011654950.1	7.4e-50	99.00	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus]	[more]
XP_022142552.1	1.7e-49	99.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925...	[more]
XP_022927362.1	2.8e-49	98.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_02...	[more]

BLAST of MELO3C025540.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16450.1	5.5e-47	88.00	unknown protein	[more]

BLAST of MELO3C025540.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C025540.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CJL9\|A0A1S3CJL9_CUCME	3.8e-50	100.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LT27\|A0A0A0LT27_CUCSA	4.9e-50	99.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1	[more]
tr\|C6SY14\|C6SY14_SOYBN	7.8e-48	96.00	Uncharacterized protein OS=Glycine max OX=3847 GN=100819728 PE=2 SV=1	[more]
tr\|A0A151T6J4\|A0A151T6J4_CAJCA	7.8e-48	96.00	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_017204 PE=4 SV=1	[more]
tr\|A0A0D2U5W6\|A0A0D2U5W6_GOSRA	1.3e-47	94.00	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G249300 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019721	NADH-UbQ_OxRdtase_su21_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025540.2.1	MELO3C025540.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019721	NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal	PFAM	PF10785	NADH-u_ox-rdase	coord: 11..89 e-value: 2.4E-23 score: 82.5
None	No IPR available	PANTHER	PTHR34062	FAMILY NOT NAMED	coord: 2..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025540.2	Csa1G181470	Cucumber (Chinese Long) v2	cumedB024
MELO3C025540.2	CSPI01G15750	Wild cucumber (PI 183967)	cpimedB025
MELO3C025540.2	Cucsa.180500	Cucumber (Gy14) v1	cgymedB320
MELO3C025540.2	CmaCh13G003840	Cucurbita maxima (Rimu)	cmamedB216
MELO3C025540.2	CmaCh18G006020	Cucurbita maxima (Rimu)	cmamedB414
MELO3C025540.2	CmoCh18G005910	Cucurbita moschata (Rifu)	cmomedB410
MELO3C025540.2	CmoCh13G004090	Cucurbita moschata (Rifu)	cmomedB204
MELO3C025540.2	Lsi02G011260	Bottle gourd (USVL1VR-Ls)	lsimedB184
MELO3C025540.2	Cp4.1LG20g06590	Cucurbita pepo (Zucchini)	cpemedB564
MELO3C025540.2	Cp4.1LG09g06510	Cucurbita pepo (Zucchini)	cpemedB035
MELO3C025540.2	CsGy1G015450	Cucumber (Gy14) v2	cgybmedB022
MELO3C025540.2	Cla009044	Watermelon (97103) v1	medwmB154
MELO3C025540.2	ClCG01G010630	Watermelon (Charleston Gray)	medwcgB126
MELO3C025540.2	Cla97C01G010420	Watermelon (97103) v2	medwmbB126
MELO3C025540.2	Carg25113	Silver-seed gourd	carmedB1017
MELO3C025540.2	Carg25611	Silver-seed gourd	carmedB0051
MELO3C025540.2	CsaV3_UNG053450	Cucumber (Chinese Long) v3	cucmedB514
MELO3C025540.2	CsaV3_1G017030	Cucumber (Chinese Long) v3	cucmedB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025540.2	Wax gourd	medwgoB182