CmaCh18G006020 (gene) Cucurbita maxima (Rimu)

NameCmaCh18G006020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
LocationCma_Chr18 : 5360451 .. 5361383 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCGATTCGGCAACCGAGTTTTTGCAGAGTCCCACAGCAATTTAGGGAGAGAGAGAGCCGGCGGATATCAGATTCAGTTTCAGTTTCAGTTTCAGCTCCGGAGAAGACAAGATGAACACTGACATTACAGCATCGACCAAGCCGGAGTACCCGGTAATAGATCGGAACCCTCCATTCACCAAAGTCGTCGGCAATTTTGACACTCTCGATTACCTTCGTTTCGTCACCATCACCGGCGTTTCCGTTACCGTCGGCTATCTTTCCGGTGCCAATTTCTTCTTTCTTCTTTTCTTCTTTGTTTCTCTTCCTTTTTCCTTACTAATCTGGAAATGTGTTGTGTTCTTTGCGTTTTAGGGATTAAGCCCGGGATTAGAGGACCGTCAATGGTGACCGGCGGTCTAATTGGACTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCCGGTCGGCTTATGGGGTTTTTCCCCAATGAAGGCGAGGTAGCTCGTTACAAGAAATAAGATTGTGCGTTTTAGGGTTTTTTCTTCTTCTGAATTTCGAGTTCTATTTGTGGACATTTTTACGATGTTCTACTTATTAACCATGCGACCGGGTTGTGTCAATAAGCTAAATGAAGCTTCATTCTGTTTCTGTTTTGCTCCTTTTCGTCTAAATGAAATAGTTGAAGACTTCACATGATTCTTTGTTTTTGATCCATAAACAAAGATGCCCGTTAAGGGGTTTGGAGAAATGAACCTTTGTGTAATTTGTATGTCCATTTTTTATTTCCTATGTTAGTTGGTATGGTTAGAATATAATATCTCTTGCCACATTGTCATAAACTCAAGTTGATTTCCAGAGTTTCAGGGTGTAACCAGGAAATTGGCAGTAGTACGCGAGTAGCTTTAAGAGGGAAACAAATGTTCTTTATTATCCAAACAGTATAACAC

mRNA sequence

CAGCGATTCGGCAACCGAGTTTTTGCAGAGTCCCACAGCAATTTAGGGAGAGAGAGAGCCGGCGGATATCAGATTCAGTTTCAGTTTCAGTTTCAGCTCCGGAGAAGACAAGATGAACACTGACATTACAGCATCGACCAAGCCGGAGTACCCGGTAATAGATCGGAACCCTCCATTCACCAAAGTCGTCGGCAATTTTGACACTCTCGATTACCTTCGTTTCGTCACCATCACCGGCGTTTCCGTTACCGTCGGCTATCTTTCCGGGATTAAGCCCGGGATTAGAGGACCGTCAATGGTGACCGGCGGTCTAATTGGACTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCCGGTCGGCTTATGGGGTTTTTCCCCAATGAAGGCGAGGTAGCTCGTTACAAGAAATAAGATTGTGCGTTTTAGGGTTTTTTCTTCTTCTGAATTTCGAGTTCTATTTGTGGACATTTTTACGATGTTCTACTTATTAACCATGCGACCGGGTTGTGTCAATAAGCTAAATGAAGCTTCATTCTGTTTCTGTTTTGCTCCTTTTCGTCTAAATGAAATAGTTGAAGACTTCACATGATTCTTTGTTTTTGATCCATAAACAAAGATGCCCGTTAAGGGGTTTGGAGAAATGAACCTTTGTGTAATTTGTATGTCCATTTTTTATTTCCTATGTTAGTTGGTATGGTTAGAATATAATATCTCTTGCCACATTGTCATAAACTCAAGTTGATTTCCAGAGTTTCAGGGTGTAACCAGGAAATTGGCAGTAGTACGCGAGTAGCTTTAAGAGGGAAACAAATGTTCTTTATTATCCAAACAGTATAACAC

Coding sequence (CDS)

ATGAACACTGACATTACAGCATCGACCAAGCCGGAGTACCCGGTAATAGATCGGAACCCTCCATTCACCAAAGTCGTCGGCAATTTTGACACTCTCGATTACCTTCGTTTCGTCACCATCACCGGCGTTTCCGTTACCGTCGGCTATCTTTCCGGGATTAAGCCCGGGATTAGAGGACCGTCAATGGTGACCGGCGGTCTAATTGGACTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCCGGTCGGCTTATGGGGTTTTTCCCCAATGAAGGCGAGGTAGCTCGTTACAAGAAATAA

Protein sequence

MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
BLAST of CmaCh18G006020 vs. TrEMBL
Match: A0A0A0LT27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-49
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

BLAST of CmaCh18G006020 vs. TrEMBL
Match: A0A061GID1_THECC (NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Theobroma cacao GN=TCM_030394 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 9.5e-48
Identity = 94/100 (94.00%), Postives = 99/100 (99.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITAS KPEYPVIDRNPPFTKVVGNF+TLDYLRFVT+TGVSVTVGYLSGIKPG++GP
Sbjct: 1   MNTDITASAKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTLTGVSVTVGYLSGIKPGLKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARY+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 100

BLAST of CmaCh18G006020 vs. TrEMBL
Match: A0A151T6J4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017204 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-47
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

BLAST of CmaCh18G006020 vs. TrEMBL
Match: A0A0B2S936_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-47
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

BLAST of CmaCh18G006020 vs. TrEMBL
Match: C6SY14_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-47
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

BLAST of CmaCh18G006020 vs. TAIR10
Match: AT4G16450.1 (AT4G16450.1 unknown protein)

HSP 1 Score: 181.8 bits (460), Expect = 2.1e-46
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

BLAST of CmaCh18G006020 vs. NCBI nr
Match: gi|659127257|ref|XP_008463609.1| (PREDICTED: uncharacterized protein LOC103501718 [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

BLAST of CmaCh18G006020 vs. NCBI nr
Match: gi|778659743|ref|XP_011654950.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-49
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

BLAST of CmaCh18G006020 vs. NCBI nr
Match: gi|700209939|gb|KGN65035.1| (hypothetical protein Csa_1G181470 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-49
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

BLAST of CmaCh18G006020 vs. NCBI nr
Match: gi|590626935|ref|XP_007026310.1| (NADH-ubiquinone oxidoreductase 21 kDa subunit [Theobroma cacao])

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47
Identity = 94/100 (94.00%), Postives = 99/100 (99.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITAS KPEYPVIDRNPPFTKVVGNF+TLDYLRFVT+TGVSVTVGYLSGIKPG++GP
Sbjct: 1   MNTDITASAKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTLTGVSVTVGYLSGIKPGLKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARY+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 100

BLAST of CmaCh18G006020 vs. NCBI nr
Match: gi|351720975|ref|NP_001237706.1| (uncharacterized protein LOC100306111 [Glycine max])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LT27_CUCSA1.0e-4998.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181470 PE=4 SV=1[more]
A0A061GID1_THECC9.5e-4894.00NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Theobroma cacao GN=TCM_030394 P... [more]
A0A151T6J4_CAJCA1.6e-4795.00Uncharacterized protein OS=Cajanus cajan GN=KK1_017204 PE=4 SV=1[more]
A0A0B2S936_GLYSO1.6e-4795.00Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1[more]
C6SY14_SOYBN1.6e-4795.00Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16450.12.1e-4687.00 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659127257|ref|XP_008463609.1|1.1e-4999.00PREDICTED: uncharacterized protein LOC103501718 [Cucumis melo][more]
gi|778659743|ref|XP_011654950.1|1.4e-4998.00PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus][more]
gi|700209939|gb|KGN65035.1|1.4e-4998.00hypothetical protein Csa_1G181470 [Cucumis sativus][more]
gi|590626935|ref|XP_007026310.1|1.4e-4794.00NADH-ubiquinone oxidoreductase 21 kDa subunit [Theobroma cacao][more]
gi|351720975|ref|NP_001237706.1|2.3e-4795.00uncharacterized protein LOC100306111 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019721NADH-UbQ_OxRdtase_su21_N
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G006020.1CmaCh18G006020.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019721NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminalPFAMPF10785NADH-u_ox-rdasecoord: 11..89
score: 2.4
NoneNo IPR availablePANTHERPTHR34062FAMILY NOT NAMEDcoord: 1..98
score: 3.4

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh18G006020CmaCh13G003840Cucurbita maxima (Rimu)cmacmaB212