Cla97C01G010420 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G010420
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	NADH-ubiquinone oxidoreductase 20.9 kDa subunit
Location	Cla97Chr01 : 15739566 .. 15739959 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACCGATATTACAGCGTCGACCAAGCCAGAGTACCCAGTAATAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGTATCAATTTCTTTCTTCCTTCTCATTTTCTTTTGTCATCTTCCATTTCGTTGTACATCTGTAAATCTCTTCTCCTGTCTTTGCGTTTTAGGGATTAAGCCCGGGATTAGGGGCCCGTCAATGGTCACCGGTGGTCTAATTGGTCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAA

mRNA sequence

ATGAATACCGATATTACAGCGTCGACCAAGCCAGAGTACCCAGTAATAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATTAGGGGCCCGTCAATGGTCACCGGTGGTCTAATTGGTCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAA

Coding sequence (CDS)

ATGAATACCGATATTACAGCGTCGACCAAGCCAGAGTACCCAGTAATAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATTAGGGGCCCGTCAATGGTCACCGGTGGTCTAATTGGTCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAA

Protein sequence

MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK

Homology

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BLAST of Cla97C01G010420 vs. NCBI nr
Match: XP_022142552.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925305.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023001508.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_022966760.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023541604.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 9.7e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]

BLAST of Cla97C01G010420 vs. NCBI nr
Match: XP_022927362.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023520383.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 1.7e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 100

[Close]

BLAST of Cla97C01G010420 vs. NCBI nr
Match: XP_008463609.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 2.2e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of Cla97C01G010420 vs. NCBI nr
Match: KGN65035.1 (hypothetical protein Csa_1G181470 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 2.8e-49
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of Cla97C01G010420 vs. NCBI nr
Match: XP_011654950.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 2.8e-49
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of Cla97C01G010420 vs. TrEMBL
Match: tr|A0A1S3CJL9|A0A1S3CJL9_CUCME (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103501718 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of Cla97C01G010420 vs. TrEMBL
Match: tr|A0A0A0LT27|A0A0A0LT27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-49
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of Cla97C01G010420 vs. TrEMBL
Match: tr|A0A2I0KL30|A0A2I0KL30_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_010416 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.8e-48
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFSTLDYLRFTTITGISVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNE EVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEDEVARYKK 100

[Close]

BLAST of Cla97C01G010420 vs. TrEMBL
Match: tr|A0A061GID1|A0A061GID1_THECC (NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Theobroma cacao OX=3641 GN=TCM_030394 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-47
Identity = 94/100 (94.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITAS KPEYPVIDRNPPFTKVVGNF+TLDYLRFVT+TGVSVTVGYLSGIKPG++GP
Sbjct: 1   MNTDITASAKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTLTGVSVTVGYLSGIKPGLKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARY+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 100

[Close]

BLAST of Cla97C01G010420 vs. TrEMBL
Match: tr|C6SY14|C6SY14_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100819728 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of Cla97C01G010420 vs. TAIR10
Match: AT4G16450.1 (unknown protein)

HSP 1 Score: 181.8 bits (460), Expect = 2.1e-46
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

The following BLAST results are available for this feature:

BLAST of Cla97C01G010420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142552.1	9.7e-50	100.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925...	[more]
XP_022927362.1	1.7e-49	99.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_02...	[more]
XP_008463609.1	2.2e-49	99.00	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo]	[more]
KGN65035.1	2.8e-49	98.00	hypothetical protein Csa_1G181470 [Cucumis sativus]	[more]
XP_011654950.1	2.8e-49	98.00	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus]	[more]

BLAST of Cla97C01G010420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CJL9\|A0A1S3CJL9_CUCME	1.4e-49	99.00	NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LT27\|A0A0A0LT27_CUCSA	1.9e-49	98.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1	[more]
tr\|A0A2I0KL30\|A0A2I0KL30_PUNGR	7.8e-48	96.00	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_010416 PE=4 SV=1	[more]
tr\|A0A061GID1\|A0A061GID1_THECC	1.7e-47	94.00	NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Theobroma cacao OX=3641 GN=TCM_...	[more]
tr\|C6SY14\|C6SY14_SOYBN	3.0e-47	95.00	Uncharacterized protein OS=Glycine max OX=3847 GN=100819728 PE=2 SV=1	[more]

BLAST of Cla97C01G010420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G010420 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16450.1	2.1e-46	87.00	unknown protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019721	NADH-UbQ_OxRdtase_su21_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G010420.1	Cla97C01G010420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019721	NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal	PFAM	PF10785	NADH-u_ox-rdase	coord: 11..89 e-value: 2.4E-23 score: 82.5
None	No IPR available	PANTHER	PTHR34062	FAMILY NOT NAMED	coord: 2..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G010420	Cla009044	Watermelon (97103) v1	wmwmbB239
Cla97C01G010420	Csa1G181470	Cucumber (Chinese Long) v2	cuwmbB009
Cla97C01G010420	MELO3C025540	Melon (DHL92) v3.5.1	mewmbB144
Cla97C01G010420	ClCG01G010630	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G010420	CSPI01G15750	Wild cucumber (PI 183967)	cpiwmbB009
Cla97C01G010420	Cucsa.180500	Cucumber (Gy14) v1	cgywmbB325
Cla97C01G010420	CmaCh18G006020	Cucurbita maxima (Rimu)	cmawmbB394
Cla97C01G010420	CmaCh13G003840	Cucurbita maxima (Rimu)	cmawmbB210
Cla97C01G010420	CmoCh13G004090	Cucurbita moschata (Rifu)	cmowmbB194
Cla97C01G010420	CmoCh18G005910	Cucurbita moschata (Rifu)	cmowmbB384
Cla97C01G010420	Lsi02G011260	Bottle gourd (USVL1VR-Ls)	lsiwmbB153
Cla97C01G010420	CsGy1G015450	Cucumber (Gy14) v2	cgybwmbB009
Cla97C01G010420	MELO3C025540.2	Melon (DHL92) v3.6.1	medwmbB126
Cla97C01G010420	Carg25113	Silver-seed gourd	carwmbB1097
Cla97C01G010420	Carg25611	Silver-seed gourd	carwmbB0050
Cla97C01G010420	CsaV3_UNG053450	Cucumber (Chinese Long) v3	cucwmbB533
Cla97C01G010420	CsaV3_1G017030	Cucumber (Chinese Long) v3	cucwmbB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G010420	Watermelon (97103) v2	wmbwmbB000
Cla97C01G010420	Cucumber (Gy14) v2	cgybwmbB396
Cla97C01G010420	Cucumber (Gy14) v1	cgywmbB018
Cla97C01G010420	Cucurbita moschata (Rifu)	cmowmbB200
Cla97C01G010420	Wild cucumber (PI 183967)	cpiwmbB436
Cla97C01G010420	Cucumber (Chinese Long) v3	cucwmbB432
Cla97C01G010420	Bottle gourd (USVL1VR-Ls)	lsiwmbB112
Cla97C01G010420	Watermelon (Charleston Gray)	wcgwmbB091
Cla97C01G010420	Wax gourd	wgowmbB460