CsGy1G015450 (gene) Cucumber (Gy14) v2

NameCsGy1G015450
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionNADH-ubiquinone oxidoreductase 20.9 kDa subunit
LocationChr1 : 11367462 .. 11369436 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATACTCATTCATCTGTCAGCTCAGCAGACACTCACTTGATCGTCTTCAACCTCAACGAGTTGGCCAAGCGAGTTTTAGAGAGAGAGGAAGAGCGGCGGAGATCAGCAGCTTTAGCTACGGAGAAGACAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGTATCAATTTCTTTCTTCCTTTTCCTTTTTTTTTTTTTTTTATCTTCCATTTCGTTGAACCATCTTGAAAATCTCTTCCCCTGACTCTGCATTTTAGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGGTAGCTCGTTATAAGAAATAAGATTGTGCGATTTAGGGTTTTTTCTTTTTCTCTTTTGCTTTGTTTTCCTCAAATTTGAGTTCTAATTGTGGACATCTTCACGATGTTTCAGTTATTAAGCGTGCAACCGGGTTGTATCAATAAGCAAATTGAAATTTCACTGTTTTCTGTGTTGCCCATTTTTCGTCTAAATGAAATAGTTGAAAAATTACATGATTCTTTGCTTTTGATCAATAAACAAAGGTGACCCATTAAGGGATTTGGACGGATGAATCATATACTCGTCTGTTGTGCCATTGTAAGTTAGTAGTCCGTTTTTAATTCAAAGTGGTCTCATTAGATTACATTTTGTTGTCATATTGCCATGACTACTCTTTATTTCCGCAGAGTATCAGAAAATAGAAAATAGTAGCCTCAAGTGGGAGAAAGATGTCCTTTATGATTGTATCAAAAGAGTACCCCAACGCCAAATGATCTTGAAAAATTATTCTGTTGCATTTACTTCGGTAGTTTTTCATCTGATCTTTTGTGCTTTATTAGTTGCATTTCATCCTTCTAGCAGTCTTGTGTGCTCTAATTATGTGGTTGTCATCTACATATGGTAATGCACTTCAGAGTAATGGGCAGATATTGATCGTTCATATCAGGTTTTTTGTTGCTTTTCCTTTATATGGCAGTGACAACTATTTAGGAGGGTAGATTATTTGCAGAAGTTGTCTAGAAATCTGGTGATGAATATGAAGTTTGTTTGTTTGAGCCTTTGGATGTTTATCAATTCCTGAGAAAGTTTAAGCAAAATTGCCGCTCAATTTTGTTTTTTCTTCCTTTGCTTGTTACTCTTTTCCCCCTATGGCCTTTTATTTCGGGAGAACAAGTGTTCAAATATTTTTCTTTCATGTGTTGCAATTTGTTGAGGTTAATTTAGAAATGCTTCTTGATGTTTTATATGTTCTCTTTCCATGTAAAAGGATAGCTTCCATTTGCAAGTTCCTATGGCTGAGGGACATTAAGCCATCTACTATTTTGTGCTTAATTTCATTGGATGAAAGGGTAATGTATGATGTAGATTATACTTGTTGCAGCTATATATCATCTATCATCTCTCATTCTGACAGTGATGAAGAAATCTTGGTTATGTATTACGATTTCTTCTTCCCAATAGAGGGGGGTTGAGGATTTGCATCATTGGTGAGATTTCAGTCTTTGTATGGTCTGGAATAAAGAAGGCTGTATGAGTGACCAGTTTATAAAGTCTGTTTTGTTTATTATCACAAATGTGGGAGTGGGAGGTTAAACTTCCAATCTTCATAGATATTTCAACCACTAAGTTATGGTTGTGTTTACTACGATGAATTTCATATTTTTCAGTATGTAGAACCTTTTTTTGTTGTTCCTTTCGGTGTCGATCCTCCAAAATCTTATCACGAAAGTGTAACCAAGATGTTGAAAACAATCAGATGA

mRNA sequence

ATGAAATACTCATTCATCTGTCAGCTCAGCAGACACTCACTTGATCGTCTTCAACCTCAACGAGTTGGCCAAGCGAGTTTTAGAGAGAGAGGAAGAGCGGCGGAGATCAGCAGCTTTAGCTACGGAGAAGACAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGTATGTAGAACCTTTTTTTGTTGTTCCTTTCGGTGTCGATCCTCCAAAATCTTATCACGAAAGTGTAACCAAGATGTTGAAAACAATCAGATGA

Coding sequence (CDS)

ATGAAATACTCATTCATCTGTCAGCTCAGCAGACACTCACTTGATCGTCTTCAACCTCAACGAGTTGGCCAAGCGAGTTTTAGAGAGAGAGGAAGAGCGGCGGAGATCAGCAGCTTTAGCTACGGAGAAGACAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGTATGTAGAACCTTTTTTTGTTGTTCCTTTCGGTGTCGATCCTCCAAAATCTTATCACGAAAGTGTAACCAAGATGTTGAAAACAATCAGATGA

Protein sequence

MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEYVEPFFVVPFGVDPPKSYHESVTKMLKTIR
BLAST of CsGy1G015450 vs. NCBI nr
Match: KGN65035.1 (hypothetical protein Csa_1G181470 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 2.3e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query: 1   MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV 60
           MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV
Sbjct: 1   MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV 60

Query: 61  VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM 120
           VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM
Sbjct: 61  VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM 120

Query: 121 YAYQNSAGRLMGFFPNDGE 140
           YAYQNSAGRLMGFFPNDGE
Sbjct: 121 YAYQNSAGRLMGFFPNDGE 139

BLAST of CsGy1G015450 vs. NCBI nr
Match: XP_011654950.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 3.8e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 140
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

BLAST of CsGy1G015450 vs. NCBI nr
Match: XP_008463609.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo])

HSP 1 Score: 193.7 bits (491), Expect = 4.9e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 140
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

BLAST of CsGy1G015450 vs. NCBI nr
Match: XP_022142552.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925305.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023001508.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_022966760.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023541604.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.2 bits (487), Expect = 1.4e-45
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 140
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GE
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGE 94

BLAST of CsGy1G015450 vs. NCBI nr
Match: XP_022927362.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023520383.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 2.4e-45
Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 140
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GE
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGE 94

BLAST of CsGy1G015450 vs. TAIR10
Match: AT4G16450.1 (unknown protein)

HSP 1 Score: 176.0 bits (445), Expect = 1.9e-44
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0

Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITA  K +YPVVDRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 140
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

BLAST of CsGy1G015450 vs. TrEMBL
Match: tr|A0A0A0LT27|A0A0A0LT27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.6e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query: 1   MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV 60
           MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV
Sbjct: 1   MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV 60

Query: 61  VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM 120
           VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM
Sbjct: 61  VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM 120

Query: 121 YAYQNSAGRLMGFFPNDGE 140
           YAYQNSAGRLMGFFPNDGE
Sbjct: 121 YAYQNSAGRLMGFFPNDGE 139

BLAST of CsGy1G015450 vs. TrEMBL
Match: tr|A0A1S3CJL9|A0A1S3CJL9_CUCME (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103501718 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.3e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 140
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

BLAST of CsGy1G015450 vs. TrEMBL
Match: tr|A0A1Q3AVX1|A0A1Q3AVX1_CEPFO (NADH-u_ox-rdase domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03408 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-44
Identity = 90/98 (91.84%), Postives = 95/98 (96.94%), Query Frame = 0

Query: 45  KMNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRG 104
           KMNTDITAS KPEYPVVDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRG
Sbjct: 2   KMNTDITASAKPEYPVVDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRG 61

Query: 105 PSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEYVE 143
           PSMVTGG+IGL+GGFMYAYQNSAGRLMGFFPN+GE  +
Sbjct: 62  PSMVTGGMIGLLGGFMYAYQNSAGRLMGFFPNEGEVAQ 99

BLAST of CsGy1G015450 vs. TrEMBL
Match: tr|V7BSU3|V7BSU3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G141600g PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPVVDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 140
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND E
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDE 94

BLAST of CsGy1G015450 vs. TrEMBL
Match: tr|C6SY14|C6SY14_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100819728 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 140
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND E
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDE 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65035.12.3e-72100.00hypothetical protein Csa_1G181470 [Cucumis sativus][more]
XP_011654950.13.8e-46100.00PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus][more]
XP_008463609.14.9e-4698.94PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo][more]
XP_022142552.11.4e-4597.87NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925... [more]
XP_022927362.12.4e-4596.81NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_02... [more]
Match NameE-valueIdentityDescription
AT4G16450.11.9e-4490.43unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LT27|A0A0A0LT27_CUCSA1.6e-72100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1[more]
tr|A0A1S3CJL9|A0A1S3CJL9_CUCME3.3e-4698.94NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1Q3AVX1|A0A1Q3AVX1_CEPFO1.0e-4491.84NADH-u_ox-rdase domain-containing protein (Fragment) OS=Cephalotus follicularis ... [more]
tr|V7BSU3|V7BSU3_PHAVU1.4e-4496.81Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G141600g PE=4 ... [more]
tr|C6SY14|C6SY14_SOYBN1.8e-4495.74Uncharacterized protein OS=Glycine max OX=3847 GN=100819728 PE=2 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019721NADH-UbQ_OxRdtase_su21_N
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G015450.1CsGy1G015450.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019721NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminalPFAMPF10785NADH-u_ox-rdasecoord: 56..134
e-value: 4.3E-22
score: 78.5
NoneNo IPR availablePANTHERPTHR34062FAMILY NOT NAMEDcoord: 45..140

The following gene(s) are paralogous to this gene:

None