CSPI01G15750 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15750
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	NADH-ubiquinone oxidoreductase 21 kDa subunit
Location	Chr1 : 11277580 .. 11278409 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATACTCATTCATCTGTCAGCTCAGCAGACACTCACTTGATCGTCTTCAACCTCAACGAGTTGGCCAAGCGAGTTTTAGAGAGAGAGGAAGAGCGGCGGAGATCAGCAGCTTTAGCTACGGAGAAGACAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGTATCAATTTCTTTCTTCCTTTTCCTTTTTTTTTTTTTTTTTTTATCTTCCATTTCGTTGAACCATCTTGAAAATCTCTTCCCCTGACTCTGCATTTTAGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGGTAGCTCGTTATAAGAAATAAGATTGTGCGATTTAGGGTTTTTTCTTTTTCTCTTTTGCTTTGTTTTCCTCAAATTTGAGTTCTAATTGTGGACATCTTCACGATGTTTCAGTTATTAAGCGTGCAACCGGGTTGTATCAATAAGCAAATTGAAATTTCACTGTTTTCTGTGTTGCCCATTTTTCGTCTAAATGAAATAGTTGAAAAATTACATGATTCTTTGCTTTTGATCAATAAACAAAGGTGACCCATTAAGGGATTTGGACGGATGAATCATATACTCGTCTGTTGTGCCATTGTAAGTTAGTAGTCC

mRNA sequence

ATGAAATACTCATTCATCTGTCAGCTCAGCAGACACTCACTTGATCGTCTTCAACCTCAACGAGTTGGCCAAGCGAGTTTTAGAGAGAGAGGAAGAGCGGCGGAGATCAGCAGCTTTAGCTACGGAGAAGACAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGGTAGCTCGTTATAAGAAATAA

Coding sequence (CDS)

ATGAAATACTCATTCATCTGTCAGCTCAGCAGACACTCACTTGATCGTCTTCAACCTCAACGAGTTGGCCAAGCGAGTTTTAGAGAGAGAGGAAGAGCGGCGGAGATCAGCAGCTTTAGCTACGGAGAAGACAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGGTAGCTCGTTATAAGAAATAA

Homology

[Close]

BLAST of CSPI01G15750 vs. TrEMBL
Match: A0A0A0LT27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-76
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 1   MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV 60
           MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV
Sbjct: 1   MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV 60

Query: 61  VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM 120
           VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM
Sbjct: 61  VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM 120

Query: 121 YAYQNSAGRLMGFFPNDGEVARYKK 146
           YAYQNSAGRLMGFFPNDGEVARYKK
Sbjct: 121 YAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of CSPI01G15750 vs. TrEMBL
Match: C6SY14_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.2e-48
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 146
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of CSPI01G15750 vs. TrEMBL
Match: A0A0B2S936_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.2e-48
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 146
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of CSPI01G15750 vs. TrEMBL
Match: A0A151T6J4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017204 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.2e-48
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 146
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of CSPI01G15750 vs. TrEMBL
Match: A0A0D2U5W6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G249300 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-47
Identity = 93/100 (93.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITAS KPEYPV+DRNPPFTKVVGNF+TLDYLRF TITGVSVTVGYLSGIKPG++GP
Sbjct: 1   MNTDITASAKPEYPVIDRNPPFTKVVGNFNTLDYLRFTTITGVSVTVGYLSGIKPGLKGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 146
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARY+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYRK 100

[Close]

BLAST of CSPI01G15750 vs. TAIR10
Match: AT4G16450.1 (AT4G16450.1 unknown protein)

HSP 1 Score: 184.5 bits (467), Expect = 4.7e-47
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITA  K +YPVVDRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 146
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

[Close]

BLAST of CSPI01G15750 vs. NCBI nr
Match: gi|700209939|gb|KGN65035.1| (hypothetical protein Csa_1G181470 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 2.0e-76
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1


Query: 1   MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV 60
           MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV
Sbjct: 1   MKYSFICQLSRHSLDRLQPQRVGQASFRERGRAAEISSFSYGEDKMNTDITASTKPEYPV 60

Query: 61  VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM 120
           VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM
Sbjct: 61  VDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFM 120

Query: 121 YAYQNSAGRLMGFFPNDGEVARYKK 146
           YAYQNSAGRLMGFFPNDGEVARYKK
Sbjct: 121 YAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of CSPI01G15750 vs. NCBI nr
Match: gi|778659743|ref|XP_011654950.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 3.3e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 146
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of CSPI01G15750 vs. NCBI nr
Match: gi|659127257|ref|XP_008463609.1| (PREDICTED: uncharacterized protein LOC103501718 [Cucumis melo])

HSP 1 Score: 206.1 bits (523), Expect = 4.3e-50
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 146
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of CSPI01G15750 vs. NCBI nr
Match: gi|351720975|ref|NP_001237706.1| (uncharacterized protein LOC100306111 [Glycine max])

HSP 1 Score: 198.4 bits (503), Expect = 8.9e-48
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 146
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of CSPI01G15750 vs. NCBI nr
Match: gi|1009107319|ref|XP_015879124.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Ziziphus jujuba])

HSP 1 Score: 198.4 bits (503), Expect = 8.9e-48
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105
           MNTDITASTKPEYPV+DRNPPFTKVVGNF +LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 146
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPND EVARY+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDDEVARYRK 100

The following BLAST results are available for this feature:

BLAST of CSPI01G15750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G15750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT27_CUCSA	1.4e-76	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181470 PE=4 SV=1	[more]
C6SY14_SOYBN	6.2e-48	95.00	Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1	[more]
A0A0B2S936_GLYSO	6.2e-48	95.00	Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1	[more]
A0A151T6J4_CAJCA	6.2e-48	95.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_017204 PE=4 SV=1	[more]
A0A0D2U5W6_GOSRA	1.1e-47	93.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G249300 PE=4 SV=1	[more]

BLAST of CSPI01G15750 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16450.1	4.7e-47	89.00	unknown protein	[more]

BLAST of CSPI01G15750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209939\|gb\|KGN65035.1\|	2.0e-76	100.00	hypothetical protein Csa_1G181470 [Cucumis sativus]	[more]
gi\|778659743\|ref\|XP_011654950.1\|	3.3e-50	100.00	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus]	[more]
gi\|659127257\|ref\|XP_008463609.1\|	4.3e-50	99.00	PREDICTED: uncharacterized protein LOC103501718 [Cucumis melo]	[more]
gi\|351720975\|ref\|NP_001237706.1\|	8.9e-48	95.00	uncharacterized protein LOC100306111 [Glycine max]	[more]
gi\|1009107319\|ref\|XP_015879124.1\|	8.9e-48	95.00	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Ziziphus jujuba...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019721	NADH-UbQ_OxRdtase_su21_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G15750.1	CSPI01G15750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019721	NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal	PFAM	PF10785	NADH-u_ox-rdase	coord: 56..134 score: 2.8
None	No IPR available	PANTHER	PTHR34062	FAMILY NOT NAMED	coord: 38..143 score: 1.3
None	No IPR available	PANTHER	PTHR34062:SF1	SUBFAMILY NOT NAMED	coord: 38..143 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G15750	Cla009044	Watermelon (97103) v1	cpiwmB054
CSPI01G15750	Csa1G181470	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G15750	MELO3C025540	Melon (DHL92) v3.5.1	cpimeB016
CSPI01G15750	ClCG01G010630	Watermelon (Charleston Gray)	cpiwcgB025
CSPI01G15750	Lsi02G011260	Bottle gourd (USVL1VR-Ls)	cpilsiB033
CSPI01G15750	MELO3C025540.2	Melon (DHL92) v3.6.1	cpimedB025
CSPI01G15750	CsaV3_1G017030	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G15750	CsaV3_UNG053450	Cucumber (Chinese Long) v3	cpicucB060
CSPI01G15750	Cla97C01G010420	Watermelon (97103) v2	cpiwmbB009
CSPI01G15750	Cucsa.180500	Cucumber (Gy14) v1	cgycpiB286
CSPI01G15750	CmaCh18G006020	Cucurbita maxima (Rimu)	cmacpiB403
CSPI01G15750	CmaCh13G003840	Cucurbita maxima (Rimu)	cmacpiB224
CSPI01G15750	CmoCh13G004090	Cucurbita moschata (Rifu)	cmocpiB211
CSPI01G15750	CmoCh18G005910	Cucurbita moschata (Rifu)	cmocpiB385
CSPI01G15750	Cp4.1LG20g06590	Cucurbita pepo (Zucchini)	cpecpiB511
CSPI01G15750	Cp4.1LG09g06510	Cucurbita pepo (Zucchini)	cpecpiB017
CSPI01G15750	CsGy1G015450	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G15750	Carg25113	Silver-seed gourd	carcpiB1074
CSPI01G15750	Carg25611	Silver-seed gourd	carcpiB0055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G15750	Wax gourd	cpiwgoB036
CSPI01G15750	Wild cucumber (PI 183967)	cpicpiB039
CSPI01G15750	Cucumber (Gy14) v1	cgycpiB017
CSPI01G15750	Cucurbita maxima (Rimu)	cmacpiB212
CSPI01G15750	Cucurbita moschata (Rifu)	cmocpiB200
CSPI01G15750	Watermelon (Charleston Gray)	cpiwcgB022
CSPI01G15750	Watermelon (97103) v1	cpiwmB050
CSPI01G15750	Cucurbita pepo (Zucchini)	cpecpiB051
CSPI01G15750	Bottle gourd (USVL1VR-Ls)	cpilsiB019
CSPI01G15750	Bottle gourd (USVL1VR-Ls)	cpilsiB038
CSPI01G15750	Cucumber (Gy14) v2	cgybcpiB249
CSPI01G15750	Silver-seed gourd	carcpiB0435
CSPI01G15750	Cucumber (Chinese Long) v3	cpicucB052
CSPI01G15750	Watermelon (97103) v2	cpiwmbB005