ClCG01G010630 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G010630
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	cDNA clone:J023121F15, full insert sequence
Location	CG_Chr01 : 16542276 .. 16543027 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCACTAACACTCGTATCGTCTTAGCAACCGCAACGAGTCAGCGAGCGAGTTTTGCAGTCACACGGTAAAAGAGAGAGAGAGAACCGGCGGAGATCAGTTTCAGCTTCGGAGAAGACAAGATGAATACCGATATTACAGCGTCGACCAAGCCAGAGTACCCAGTAATAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGTATCAATTTCTTTCTTCCTTCTCATTTTCTTTTGTCATCTTCCATTTCGTTGTACATCTGTAAATCTCTTCTCCTGTCTTTGCGTTTTAGGGATTAAGCCCGGGATTAGGGGCCCGTCAATGGTCACCGGTGGTCTAATTGGTCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAAGATCGTGCGTTTTAGGGTTTTTTTCTTTTTTCCCTTTTTCTTTTTCGCTTTCTTTTTCTGAAATTTGGGTTCCATTTGTGGACATTTTTACGATTTTCCAGTTGTTAAATGTGCAACTTCTTGTATCAATAAGCAAATTGAAACTTCACTTTTTTCTGTGTTGCCCATTTTTCGTCTAAATGAAGTAGTTGAAGACTTTACTGATTTCGTTGCTTTTGATCGATAAACGAAGTTGAC

mRNA sequence

AACCACTAACACTCGTATCGTCTTAGCAACCGCAACGAGTCAGCGAGCGAGTTTTGCAGTCACACGGTAAAAGAGAGAGAGAGAACCGGCGGAGATCAGTTTCAGCTTCGGAGAAGACAAGATGAATACCGATATTACAGCGTCGACCAAGCCAGAGTACCCAGTAATAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATTAGGGGCCCGTCAATGGTCACCGGTGGTCTAATTGGTCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAAGATCGTGCGTTTTAGGGTTTTTTTCTTTTTTCCCTTTTTCTTTTTCGCTTTCTTTTTCTGAAATTTGGGTTCCATTTGTGGACATTTTTACGATTTTCCAGTTGTTAAATGTGCAACTTCTTGTATCAATAAGCAAATTGAAACTTCACTTTTTTCTGTGTTGCCCATTTTTCGTCTAAATGAAGTAGTTGAAGACTTTACTGATTTCGTTGCTTTTGATCGATAAACGAAGTTGAC

Coding sequence (CDS)

ATGAATACCGATATTACAGCGTCGACCAAGCCAGAGTACCCAGTAATAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATTAGGGGCCCGTCAATGGTCACCGGTGGTCTAATTGGTCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAA

Protein sequence

MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK

Homology

[Close]

BLAST of ClCG01G010630 vs. TrEMBL
Match: A0A0A0LT27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.5e-50
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of ClCG01G010630 vs. TrEMBL
Match: A0A061GID1_THECC (NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Theobroma cacao GN=TCM_030394 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.3e-48
Identity = 94/100 (94.00%), Postives = 99/100 (99.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITAS KPEYPVIDRNPPFTKVVGNF+TLDYLRFVT+TGVSVTVGYLSGIKPG++GP
Sbjct: 1   MNTDITASAKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTLTGVSVTVGYLSGIKPGLKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARY+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 100

[Close]

BLAST of ClCG01G010630 vs. TrEMBL
Match: A0A0B2S936_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.5e-48
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of ClCG01G010630 vs. TrEMBL
Match: A0A151T6J4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017204 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.5e-48
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of ClCG01G010630 vs. TrEMBL
Match: C6SY14_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.5e-48
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of ClCG01G010630 vs. TAIR10
Match: AT4G16450.1 (AT4G16450.1 unknown protein)

HSP 1 Score: 183.3 bits (464), Expect = 7.2e-47
Identity = 87/100 (87.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

[Close]

BLAST of ClCG01G010630 vs. NCBI nr
Match: gi|659127257|ref|XP_008463609.1| (PREDICTED: uncharacterized protein LOC103501718 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 3.8e-50
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of ClCG01G010630 vs. NCBI nr
Match: gi|778659743|ref|XP_011654950.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 5.0e-50
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of ClCG01G010630 vs. NCBI nr
Match: gi|700209939|gb|KGN65035.1| (hypothetical protein Csa_1G181470 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 5.0e-50
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of ClCG01G010630 vs. NCBI nr
Match: gi|590626935|ref|XP_007026310.1| (NADH-ubiquinone oxidoreductase 21 kDa subunit [Theobroma cacao])

HSP 1 Score: 198.7 bits (504), Expect = 4.7e-48
Identity = 94/100 (94.00%), Postives = 99/100 (99.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITAS KPEYPVIDRNPPFTKVVGNF+TLDYLRFVT+TGVSVTVGYLSGIKPG++GP
Sbjct: 1   MNTDITASAKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTLTGVSVTVGYLSGIKPGLKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARY+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 100

[Close]

BLAST of ClCG01G010630 vs. NCBI nr
Match: gi|351720975|ref|NP_001237706.1| (uncharacterized protein LOC100306111 [Glycine max])

HSP 1 Score: 198.0 bits (502), Expect = 8.0e-48
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

The following BLAST results are available for this feature:

BLAST of ClCG01G010630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT27_CUCSA	3.5e-50	98.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181470 PE=4 SV=1	[more]
A0A061GID1_THECC	3.3e-48	94.00	NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Theobroma cacao GN=TCM_030394 P...	[more]
A0A0B2S936_GLYSO	5.5e-48	95.00	Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1	[more]
A0A151T6J4_CAJCA	5.5e-48	95.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_017204 PE=4 SV=1	[more]
C6SY14_SOYBN	5.5e-48	95.00	Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1	[more]

BLAST of ClCG01G010630 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16450.1	7.2e-47	87.00	unknown protein	[more]

BLAST of ClCG01G010630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127257\|ref\|XP_008463609.1\|	3.8e-50	99.00	PREDICTED: uncharacterized protein LOC103501718 [Cucumis melo]	[more]
gi\|778659743\|ref\|XP_011654950.1\|	5.0e-50	98.00	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus]	[more]
gi\|700209939\|gb\|KGN65035.1\|	5.0e-50	98.00	hypothetical protein Csa_1G181470 [Cucumis sativus]	[more]
gi\|590626935\|ref\|XP_007026310.1\|	4.7e-48	94.00	NADH-ubiquinone oxidoreductase 21 kDa subunit [Theobroma cacao]	[more]
gi\|351720975\|ref\|NP_001237706.1\|	8.0e-48	95.00	uncharacterized protein LOC100306111 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019721	NADH-UbQ_OxRdtase_su21_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G010630.1	ClCG01G010630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019721	NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal	PFAM	PF10785	NADH-u_ox-rdase	coord: 11..89 score: 2.4
None	No IPR available	PANTHER	PTHR34062	FAMILY NOT NAMED	coord: 1..98 score: 3.4
None	No IPR available	PANTHER	PTHR34062:SF1	SUBFAMILY NOT NAMED	coord: 1..98 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G010630	Csa1G181470	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G010630	MELO3C025540	Melon (DHL92) v3.5.1	mewcgB142
ClCG01G010630	Cla009044	Watermelon (97103) v1	wcgwmB146
ClCG01G010630	Cla97C01G010420	Watermelon (97103) v2	wcgwmbB089
ClCG01G010630	CSPI01G15750	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G010630	Cucsa.180500	Cucumber (Gy14) v1	cgywcgB321
ClCG01G010630	CmaCh18G006020	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G010630	CmaCh13G003840	Cucurbita maxima (Rimu)	cmawcgB182
ClCG01G010630	CmoCh18G005910	Cucurbita moschata (Rifu)	cmowcgB345
ClCG01G010630	CmoCh13G004090	Cucurbita moschata (Rifu)	cmowcgB173
ClCG01G010630	Lsi02G011260	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G010630	Cp4.1LG09g06510	Cucurbita pepo (Zucchini)	cpewcgB030
ClCG01G010630	Cp4.1LG20g06590	Cucurbita pepo (Zucchini)	cpewcgB457
ClCG01G010630	CsGy1G015450	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G010630	MELO3C025540.2	Melon (DHL92) v3.6.1	medwcgB126
ClCG01G010630	Carg25611	Silver-seed gourd	carwcgB0053
ClCG01G010630	Carg25113	Silver-seed gourd	carwcgB1011
ClCG01G010630	CsaV3_1G017030	Cucumber (Chinese Long) v3	cucwcgB024
ClCG01G010630	CsaV3_UNG053450	Cucumber (Chinese Long) v3	cucwcgB534

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G010630	Wax gourd	wcgwgoB241