CmoCh13G004090 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G004090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
Location	Cmo_Chr13 : 5160683 .. 5161496 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTCAGACGGCAGCGAGTCGGCAGGCGAATTATTACAGAGTCGCACAGCGAGAGAGAGAGAGAGAGAGCCGGCGGAGGTCAGTTTCAGCACCGGAGAAGACGTGATGAACACCGACATTACAGCTTCGACTAAGCCAGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGTAATTTCGATACTCTCGATTACCTCCGTTTCGTCACCATTACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGTACCAATCTCTCTCTCTCTTACTTCTCTTCTTTTCTCCTATTCCGTTTCGTTGCTCGTCTGGAAATCTGTTCTCCTGTCTTTGCGTTTTAGGGATTAAGCCCGGAATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGATTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAAGATTGCGCGTTTTCGTGTTCTTTCTTTTCCTTTTTTTGCTTTCTTCTTCTGAAATTTAAGTTCCATTTGTGGACACTGTTACGATGTTCACCTTATTAAACTTGCAATCAGGTTGTGTCAATAAGCAAATTGAATCTTCACTTTTTTCTGAAGATTTTACACGATTTCTTTGTTTTTGATCAATTACAATGGTGCTCCATTAAGGGGTATTGGTAGACCTTTTATTGAAGAGGTCTCGATAGACTTAATTTTGTGTCACATTGTTATAACTCGTGTTGATTTCCTCAAGAGTTTCAGCATCTAATAGAAAATAG

mRNA sequence

GTCTCAGACGGCAGCGAGTCGGCAGGCGAATTATTACAGAGTCGCACAGCGAGAGAGAGAGAGAGAGAGCCGGCGGAGGTCAGTTTCAGCACCGGAGAAGACGTGATGAACACCGACATTACAGCTTCGACTAAGCCAGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGTAATTTCGATACTCTCGATTACCTCCGTTTCGTCACCATTACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGAATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGATTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAAGATTGCGCGTTTTCGTGTTCTTTCTTTTCCTTTTTTTGCTTTCTTCTTCTGAAATTTAAGTTCCATTTGTGGACACTGTTACGATGTTCACCTTATTAAACTTGCAATCAGGTTGTGTCAATAAGCAAATTGAATCTTCACTTTTTTCTGAAGATTTTACACGATTTCTTTGTTTTTGATCAATTACAATGGTGCTCCATTAAGGGGTATTGGTAGACCTTTTATTGAAGAGGTCTCGATAGACTTAATTTTGTGTCACATTGTTATAACTCGTGTTGATTTCCTCAAGAGTTTCAGCATCTAATAGAAAATAG

Coding sequence (CDS)

ATGAACACCGACATTACAGCTTCGACTAAGCCAGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGTAATTTCGATACTCTCGATTACCTCCGTTTCGTCACCATTACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGAATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGATTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAA

Homology

[Close]

BLAST of CmoCh13G004090 vs. TrEMBL
Match: A0A0A0LT27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-49
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of CmoCh13G004090 vs. TrEMBL
Match: A0A061GID1_THECC (NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Theobroma cacao GN=TCM_030394 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-47
Identity = 93/100 (93.00%), Postives = 99/100 (99.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITAS KPEYPVIDRNPPFTKVVGNF+TLDYLRFVT+TGVSVTVGYLSGIKPG++GP
Sbjct: 1   MNTDITASAKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTLTGVSVTVGYLSGIKPGLKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARY+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 100

[Close]

BLAST of CmoCh13G004090 vs. TrEMBL
Match: A0A151T6J4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017204 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-47
Identity = 94/100 (94.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGR+MGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of CmoCh13G004090 vs. TrEMBL
Match: A0A0B2S936_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-47
Identity = 94/100 (94.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGR+MGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of CmoCh13G004090 vs. TrEMBL
Match: C6SY14_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-47
Identity = 94/100 (94.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGR+MGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

[Close]

BLAST of CmoCh13G004090 vs. TAIR10
Match: AT4G16450.1 (AT4G16450.1 unknown protein)

HSP 1 Score: 181.0 bits (458), Expect = 3.6e-46
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

[Close]

BLAST of CmoCh13G004090 vs. NCBI nr
Match: gi|659127257|ref|XP_008463609.1| (PREDICTED: uncharacterized protein LOC103501718 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-49
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of CmoCh13G004090 vs. NCBI nr
Match: gi|778659743|ref|XP_011654950.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 2.5e-49
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]

BLAST of CmoCh13G004090 vs. NCBI nr
Match: gi|700209939|gb|KGN65035.1| (hypothetical protein Csa_1G181470 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 2.5e-49
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]

BLAST of CmoCh13G004090 vs. NCBI nr
Match: gi|590626935|ref|XP_007026310.1| (NADH-ubiquinone oxidoreductase 21 kDa subunit [Theobroma cacao])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 93/100 (93.00%), Postives = 99/100 (99.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITAS KPEYPVIDRNPPFTKVVGNF+TLDYLRFVT+TGVSVTVGYLSGIKPG++GP
Sbjct: 1   MNTDITASAKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTLTGVSVTVGYLSGIKPGLKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARY+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 100

[Close]

BLAST of CmoCh13G004090 vs. NCBI nr
Match: gi|351720975|ref|NP_001237706.1| (uncharacterized protein LOC100306111 [Glycine max])

HSP 1 Score: 195.7 bits (496), Expect = 3.9e-47
Identity = 94/100 (94.00%), Postives = 98/100 (98.00%), Query Frame = 1


Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGR+MGFFPN+ EVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

The following BLAST results are available for this feature:

BLAST of CmoCh13G004090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G004090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT27_CUCSA	1.7e-49	97.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181470 PE=4 SV=1	[more]
A0A061GID1_THECC	1.6e-47	93.00	NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Theobroma cacao GN=TCM_030394 P...	[more]
A0A151T6J4_CAJCA	2.8e-47	94.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_017204 PE=4 SV=1	[more]
A0A0B2S936_GLYSO	2.8e-47	94.00	Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1	[more]
C6SY14_SOYBN	2.8e-47	94.00	Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1	[more]

BLAST of CmoCh13G004090 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16450.1	3.6e-46	86.00	unknown protein	[more]

BLAST of CmoCh13G004090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127257\|ref\|XP_008463609.1\|	1.9e-49	98.00	PREDICTED: uncharacterized protein LOC103501718 [Cucumis melo]	[more]
gi\|778659743\|ref\|XP_011654950.1\|	2.5e-49	97.00	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus]	[more]
gi\|700209939\|gb\|KGN65035.1\|	2.5e-49	97.00	hypothetical protein Csa_1G181470 [Cucumis sativus]	[more]
gi\|590626935\|ref\|XP_007026310.1\|	2.3e-47	93.00	NADH-ubiquinone oxidoreductase 21 kDa subunit [Theobroma cacao]	[more]
gi\|351720975\|ref\|NP_001237706.1\|	3.9e-47	94.00	uncharacterized protein LOC100306111 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019721	NADH-UbQ_OxRdtase_su21_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004090.1	CmoCh13G004090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019721	NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal	PFAM	PF10785	NADH-u_ox-rdase	coord: 11..89 score: 1.7
None	No IPR available	PANTHER	PTHR34062	FAMILY NOT NAMED	coord: 1..98 score: 2.7
None	No IPR available	PANTHER	PTHR34062:SF1	SUBFAMILY NOT NAMED	coord: 1..98 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G004090	Cucsa.180500	Cucumber (Gy14) v1	cgycmoB0513
CmoCh13G004090	CmaCh13G003840	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G004090	CmaCh18G006020	Cucurbita maxima (Rimu)	cmacmoB396
CmoCh13G004090	Cla009044	Watermelon (97103) v1	cmowmB184
CmoCh13G004090	Csa1G181470	Cucumber (Chinese Long) v2	cmocuB209
CmoCh13G004090	MELO3C025540	Melon (DHL92) v3.5.1	cmomeB186
CmoCh13G004090	ClCG01G010630	Watermelon (Charleston Gray)	cmowcgB173
CmoCh13G004090	CSPI01G15750	Wild cucumber (PI 183967)	cmocpiB211
CmoCh13G004090	Lsi02G011260	Bottle gourd (USVL1VR-Ls)	cmolsiB195
CmoCh13G004090	Cp4.1LG09g06510	Cucurbita pepo (Zucchini)	cmocpeB185
CmoCh13G004090	Cp4.1LG20g06590	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G004090	MELO3C025540.2	Melon (DHL92) v3.6.1	cmomedB204
CmoCh13G004090	CsaV3_UNG053450	Cucumber (Chinese Long) v3	cmocucB0258
CmoCh13G004090	CsaV3_1G017030	Cucumber (Chinese Long) v3	cmocucB0241
CmoCh13G004090	Cla97C01G010420	Watermelon (97103) v2	cmowmbB194
CmoCh13G004090	CsGy1G015450	Cucumber (Gy14) v2	cgybcmoB065
CmoCh13G004090	Carg25113	Silver-seed gourd	carcmoB1390
CmoCh13G004090	Carg25611	Silver-seed gourd	carcmoB0062

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G004090	CmoCh18G005910	Cucurbita moschata (Rifu)	cmocmoB170

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G004090	Wax gourd	cmowgoB0255
CmoCh13G004090	Wax gourd	cmowgoB0264
CmoCh13G004090	Wax gourd	cmowgoB0271
CmoCh13G004090	Cucurbita moschata (Rifu)	cmocmoB168
CmoCh13G004090	Cucurbita maxima (Rimu)	cmacmoB398
CmoCh13G004090	Wild cucumber (PI 183967)	cmocpiB200
CmoCh13G004090	Cucumber (Chinese Long) v2	cmocuB196
CmoCh13G004090	Watermelon (Charleston Gray)	cmowcgB177
CmoCh13G004090	Watermelon (97103) v1	cmowmB192
CmoCh13G004090	Cucurbita pepo (Zucchini)	cmocpeB182
CmoCh13G004090	Bottle gourd (USVL1VR-Ls)	cmolsiB197
CmoCh13G004090	Cucumber (Gy14) v2	cgybcmoB074
CmoCh13G004090	Cucumber (Chinese Long) v3	cmocucB0228
CmoCh13G004090	Watermelon (97103) v2	cmowmbB200
CmoCh13G004090	Watermelon (97103) v2	cmowmbB195