CsaV3_1G017030 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G017030
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	NADH-ubiquinone oxidoreductase subunit
Location	chr1 : 11553855 .. 11555148 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGCCCAGCCCATGAAATACTCATTCATCTGTCAGCTCAGCAGACACTCACTTGATCGTCTTCAACCTCAACGAGTTGGCCAAGCGAGTTTTAGAGAGAGAGGAAGACGGCGGAGATCAGCAGCTTTAGCTACGGAGAAGACAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGTATCAATTTCTTTCTTCCTTTTCCTTTTTTTTTTTTTATCTTCCATTTCGTTGAACCATCTTGAAAATCTCTTCCCCTGACTCTGCATTTTAGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGGTAGCTCGTTATAAGAAATAAGATTGTGCGATTTAGGGTTTTTTCTTTTTCTCTTTTGCTTTTTTCCTCAAATTTGAGTTCTAATTGTGGACATCTTCACGATGTTTCAGTTATTAAGCGTGCAACCGGGTTGTATCAATAAGCAAATTGAAATTTCACTGTTTTCTGTGTTGCCCATTTTTCGTCTAAATGAAATAGTTGAAAAATTACATGATTCTTTGTTTTGATCAATAAACAAAGGTGACCCATTAAGGGATTTGGACGGATGAATCATATACTCGTCTGTTGTGCCATTGTAAGTTAGTAGTCCGTTTTTAATTCAAAGTGGTCTCATTAGATTACATTTTGTTGTCATATTGCCATGACTACTCTTTATTTCCGCAGAGTATCAGAAAATAGAAAATAGTAGCCTCAAGTGGGAGAAAGATGTCCTTTATGATTGTATCAAAAGAGTACCCCAACGCCAAATGATCTTGAAAAATTATTCTGTTGCATTTACTTCGGTAGTTTTTCATCTGATCTTTTGTGCTTTATTAGTTGCATTTCATCCTTCTAGCAGTCTTGTGTGCTCTAATTATGTGGTTGTCATCTACATATGGTAATGCACTTCAGAGTAATGGGCAGATATTGATCGTTCATATCAGGTTTTTTTGTTGCTTTTCCTTTATATGGCAGTGACAACTATTTAGGAGGGTAGATTATTTGCAGAAGTTGTCTAGAAATCTGGTGATGAATATGAAGTTTGTTTGTTTGAGCCTTTGGATGTTTATC

mRNA sequence

ATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGTGA

Coding sequence (CDS)

ATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTACCCAGTAGTAGATCGGAACCCTCCATTCACTAAAGTCGTCGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATCACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGGATAAGGGGCCCATCAATGGTGACCGGTGGTCTAATTGGCCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCGGGTCGGCTTATGGGATTCTTCCCCAATGATGGCGAGTGA

Protein sequence

MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE

Homology

[Close]

BLAST of CsaV3_1G017030 vs. NCBI nr
Match: KGN65035.1 (hypothetical protein Csa_1G181470 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 139

[Close]

BLAST of CsaV3_1G017030 vs. NCBI nr
Match: XP_011654950.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

[Close]

BLAST of CsaV3_1G017030 vs. NCBI nr
Match: XP_008463609.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

[Close]

BLAST of CsaV3_1G017030 vs. NCBI nr
Match: XP_022142552.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925305.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023001508.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_022966760.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023541604.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.0 bits (489), Expect = 4.7e-46
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGE 94

[Close]

BLAST of CsaV3_1G017030 vs. NCBI nr
Match: XP_022927362.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023520383.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.2 bits (487), Expect = 8.1e-46
Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGE 94

[Close]

BLAST of CsaV3_1G017030 vs. TAIR10
Match: AT4G16450.1 (unknown protein)

HSP 1 Score: 176.8 bits (447), Expect = 6.4e-45
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITA  K +YPVVDRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1  MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

[Close]

BLAST of CsaV3_1G017030 vs. TrEMBL
Match: tr|A0A0A0LT27|A0A0A0LT27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.2e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 139

[Close]

BLAST of CsaV3_1G017030 vs. TrEMBL
Match: tr|A0A1S3CJL9|A0A1S3CJL9_CUCME (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103501718 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE
Sbjct: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 94

[Close]

BLAST of CsaV3_1G017030 vs. TrEMBL
Match: tr|V7BSU3|V7BSU3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G141600g PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.5e-45
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPVVDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND E
Sbjct: 61 SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDE 94

[Close]

BLAST of CsaV3_1G017030 vs. TrEMBL
Match: tr|C6SY14|C6SY14_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100819728 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.9e-45
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPV+DRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND E
Sbjct: 61 SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDE 94

[Close]

BLAST of CsaV3_1G017030 vs. TrEMBL
Match: tr|A0A1S3VI15|A0A1S3VI15_VIGRR (uncharacterized protein LOC106775330 OS=Vigna radiata var. radiata OX=3916 GN=LOC106775330 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.9e-45
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
          MNTDITASTKPEYPVVDRNPPFTKVVGNF TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1  MNTDITASTKPEYPVVDRNPPFTKVVGNFSTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGE 95
          SMVTGGLIG+MGGFMYAYQNSAGRLMGFFPND E
Sbjct: 61 SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDE 94

The following BLAST results are available for this feature:

BLAST of CsaV3_1G017030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65035.1	1.2e-46	100.00	hypothetical protein Csa_1G181470 [Cucumis sativus]	[more]
XP_011654950.1	1.2e-46	100.00	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus]	[more]
XP_008463609.1	1.6e-46	98.94	PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo]	[more]
XP_022142552.1	4.7e-46	97.87	NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925...	[more]
XP_022927362.1	8.1e-46	96.81	NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_02...	[more]

BLAST of CsaV3_1G017030 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16450.1	6.4e-45	90.43	unknown protein	[more]

BLAST of CsaV3_1G017030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G017030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT27\|A0A0A0LT27_CUCSA	8.2e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1	[more]
tr\|A0A1S3CJL9\|A0A1S3CJL9_CUCME	1.1e-46	98.94	NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|V7BSU3\|V7BSU3_PHAVU	4.5e-45	96.81	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G141600g PE=4 ...	[more]
tr\|C6SY14\|C6SY14_SOYBN	5.9e-45	95.74	Uncharacterized protein OS=Glycine max OX=3847 GN=100819728 PE=2 SV=1	[more]
tr\|A0A1S3VI15\|A0A1S3VI15_VIGRR	5.9e-45	96.81	uncharacterized protein LOC106775330 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019721	NADH-UbQ_OxRdtase_su21_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G017030.1	CsaV3_1G017030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019721	NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal	PFAM	PF10785	NADH-u_ox-rdase	coord: 11..89 e-value: 7.4E-23 score: 80.9
None	No IPR available	PANTHER	PTHR34062	FAMILY NOT NAMED	coord: 2..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G017030	CSPI01G15750	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G017030	Cucsa.180500	Cucumber (Gy14) v1	cgycucB290
CsaV3_1G017030	CmaCh13G003840	Cucurbita maxima (Rimu)	cmacucB0255
CsaV3_1G017030	CmaCh18G006020	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G017030	CmoCh13G004090	Cucurbita moschata (Rifu)	cmocucB0241
CsaV3_1G017030	CmoCh18G005910	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G017030	Cp4.1LG09g06510	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G017030	Cp4.1LG20g06590	Cucurbita pepo (Zucchini)	cpecucB0629
CsaV3_1G017030	CsGy1G015450	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G017030	Carg25611	Silver-seed gourd	carcucB0056
CsaV3_1G017030	Carg25113	Silver-seed gourd	carcucB1084
CsaV3_1G017030	Cla009044	Watermelon (97103) v1	cucwmB057
CsaV3_1G017030	MELO3C025540	Melon (DHL92) v3.5.1	cucmeB014
CsaV3_1G017030	ClCG01G010630	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G017030	Lsi02G011260	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G017030	MELO3C025540.2	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G017030	Cla97C01G010420	Watermelon (97103) v2	cucwmbB008

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_1G017030	CsaV3_UNG053450	Cucumber (Chinese Long) v3	cuccucB056

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G017030	Cucurbita maxima (Rimu)	cmacucB0241
CsaV3_1G017030	Cucurbita moschata (Rifu)	cmocucB0228
CsaV3_1G017030	Wax gourd	cucwgoB039