Carg25113 (gene) Silver-seed gourd

Overview
NameCarg25113
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionNADH-ubiquinone oxidoreductase subunit
LocationCucurbita_argyrosperma_scaffold_211 : 62315 .. 62922 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGTCGCACAGCGAGGGAGAGAGCCGGCGGAGGTCAGTTTCAGCACCGGAGAACGTGATGAACACCGACATTACAGCTTCGACTAAGCCAGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATTACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGTACCAATCTCTCTCTCTCTCTTACTTCTCTTCTTTTCTCCTATTCCGTTTCGTTGCTCGTCTGGAAATCTGTTCTCCTGTCTTTGCGTTTTAGGGATTAAGCCCGGAATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGATTATGGGATTCTTCCCCAATGAAGACGAGGTAGCTCGTTATAAGAAATAAGATTGCGCGTTTTCGTGTTCTTTCTTTTCCTTTTTTTGCTTTCTTCTTCTGAAATTTAAGTTCCATTTGTGGACACTGTTACGATGTTCACCTTATTAAACTTGCAATCAGGTTGTGTCAATAAGCAAATTTAATCTTCACTTTTTTCTGAAGA

mRNA sequence

GAGTCGCACAGCGAGGGAGAGAGCCGGCGGAGGTCAGTTTCAGCACCGGAGAACGTGATGAACACCGACATTACAGCTTCGACTAAGCCAGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATTACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGAATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGATTATGGGATTCTTCCCCAATGAAGACGAGGTAGCTCGTTATAAGAAATAAGATTGCGCGTTTTCGTGTTCTTTCTTTTCCTTTTTTTGCTTTCTTCTTCTGAAATTTAAGTTCCATTTGTGGACACTGTTACGATGTTCACCTTATTAAACTTGCAATCAGGTTGTGTCAATAAGCAAATTTAATCTTCACTTTTTTCTGAAGA

Coding sequence (CDS)

ATGAACACCGACATTACAGCTTCGACTAAGCCAGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGCAATTTCGACACTCTCGATTACCTCCGTTTCGTCACCATTACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGAATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGATTATGGGATTCTTCCCCAATGAAGACGAGGTAGCTCGTTATAAGAAATAA

Protein sequence

MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK
Homology
[Close]
BLAST of Carg25113 vs. NCBI nr
Match: XP_022927362.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023520383.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 4.8e-49
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNE EVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 100

[Close]
BLAST of Carg25113 vs. NCBI nr
Match: XP_022142552.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925305.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023001508.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_022966760.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023541604.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 8.2e-49
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNE EVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]
BLAST of Carg25113 vs. NCBI nr
Match: XP_008463609.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 1.8e-48
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+ EVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]
BLAST of Carg25113 vs. NCBI nr
Match: KGN65035.1 (hypothetical protein Csa_1G181470 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 2.4e-48
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+ EVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]
BLAST of Carg25113 vs. NCBI nr
Match: XP_011654950.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 2.4e-48
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+ EVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]
BLAST of Carg25113 vs. TAIR10
Match: AT4G16450.1 (unknown protein)

HSP 1 Score: 178.7 bits (452), Expect = 1.8e-45
Identity = 85/100 (85.00%), Postives = 92/100 (92.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+ EVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

[Close]
BLAST of Carg25113 vs. TrEMBL
Match: tr|A0A1S3CJL9|A0A1S3CJL9_CUCME (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103501718 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.2e-48
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+ EVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]
BLAST of Carg25113 vs. TrEMBL
Match: tr|A0A0A0LT27|A0A0A0LT27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.6e-48
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+ EVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]
BLAST of Carg25113 vs. TrEMBL
Match: tr|A0A2I0KL30|A0A2I0KL30_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_010416 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.6e-48
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFSTLDYLRFTTITGISVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEDEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEDEVARYKK 100

[Close]
BLAST of Carg25113 vs. TrEMBL
Match: tr|A0A2N9IXM6|A0A2N9IXM6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58009 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.6e-48
Identity = 95/100 (95.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNF +LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGRIMGFFPN+DEVARYKK
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRIMGFFPNDDEVARYKK 100

[Close]
BLAST of Carg25113 vs. TrEMBL
Match: tr|C6SY14|C6SY14_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100819728 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.0e-48
Identity = 95/100 (95.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNF+TLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 101
           SMVTGGLIG+MGGFMYAYQNSAGR+MGFFPN+DEVARY K
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNK 100

The following BLAST results are available for this feature:
BLAST of Carg25113 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022927362.14.8e-4999.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_02... [more]
XP_022142552.18.2e-4998.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925... [more]
XP_008463609.11.8e-4897.00PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo][more]
KGN65035.12.4e-4896.00hypothetical protein Csa_1G181470 [Cucumis sativus][more]
XP_011654950.12.4e-4896.00PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus][more]
BLAST of Carg25113 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16450.11.8e-4585.00unknown protein[more]
BLAST of Carg25113 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg25113 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CJL9|A0A1S3CJL9_CUCME1.2e-4897.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LT27|A0A0A0LT27_CUCSA1.6e-4896.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1[more]
tr|A0A2I0KL30|A0A2I0KL30_PUNGR1.6e-4896.00Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_010416 PE=4 SV=1[more]
tr|A0A2N9IXM6|A0A2N9IXM6_FAGSY4.6e-4895.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58009 PE=4 SV=1[more]
tr|C6SY14|C6SY14_SOYBN6.0e-4895.00Uncharacterized protein OS=Glycine max OX=3847 GN=100819728 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019721NADH-UbQ_OxRdtase_su21_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25113-RACarg25113-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019721NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminalPFAMPF10785NADH-u_ox-rdasecoord: 11..89
e-value: 1.7E-22
score: 79.8
NoneNo IPR availablePANTHERPTHR34062FAMILY NOT NAMEDcoord: 2..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg25113Cla009044Watermelon (97103) v1carwmB1039
Carg25113Csa1G181470Cucumber (Chinese Long) v2carcuB1052
Carg25113MELO3C025540Melon (DHL92) v3.5.1carmeB1006
Carg25113ClCG01G010630Watermelon (Charleston Gray)carwcgB1011
Carg25113CSPI01G15750Wild cucumber (PI 183967)carcpiB1074
Carg25113Cucsa.180500Cucumber (Gy14) v1carcgyB1154
Carg25113CmaCh18G006020Cucurbita maxima (Rimu)carcmaB1436
Carg25113CmaCh13G003840Cucurbita maxima (Rimu)carcmaB1435
Carg25113CmoCh18G005910Cucurbita moschata (Rifu)carcmoB1391
Carg25113CmoCh13G004090Cucurbita moschata (Rifu)carcmoB1390
Carg25113Lsi02G011260Bottle gourd (USVL1VR-Ls)carlsiB947
Carg25113Cp4.1LG20g06590Cucurbita pepo (Zucchini)carcpeB1444
Carg25113Cp4.1LG09g06510Cucurbita pepo (Zucchini)carcpeB1443
Carg25113CsGy1G015450Cucumber (Gy14) v2carcgybB1021
Carg25113MELO3C025540.2Melon (DHL92) v3.6.1carmedB1017
Carg25113CsaV3_UNG053450Cucumber (Chinese Long) v3carcucB1085
Carg25113CsaV3_1G017030Cucumber (Chinese Long) v3carcucB1084
Carg25113Cla97C01G010420Watermelon (97103) v2carwmbB1097
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg25113Carg25611Silver-seed gourdcarcarB055
The following block(s) are covering this gene:
GeneOrganismBlock
Carg25113Cucumber (Gy14) v2carcgybB1020
Carg25113Wild cucumber (PI 183967)carcpiB1073
Carg25113Cucumber (Chinese Long) v2carcuB1051
Carg25113Cucumber (Chinese Long) v3carcucB1083
Carg25113Watermelon (Charleston Gray)carwcgB1012
Carg25113Watermelon (97103) v1carwmB1040
Carg25113Watermelon (97103) v2carwmbB1098
Carg25113Wax gourdcarwgoB1217
Carg25113Wax gourdcarwgoB1218