MELO3C008177 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008177
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein of unknown function (DUF 3339)
Location	chr3 : 1572544 .. 1573046 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTCCCATTTATTTATACATAAACCTCTCGATTCTAAATCCCATTAACATCAAATCAAAGCTGTTTCTTTTTTCTAGAAAAAACAAAAGAAAGAAATGGGGGATTGGGGCCCTGTTCTAATAGCTGTTATACTGTTCGTAGTTCTTAGCCCCGGCGTTCTGTTTCAGCTTCCCGGAAACGATAGAGTTGTGCAGTTCGTCAATATGCAGACCAGTGCCATCTCCGTCTTCGTTCACTCCATCATTTTCTTTGGCCTCATCACTATCTTTGTCATCGCCATTGGCGTTCATATTTCCTCTGGGTAGAAGTTAAAACTAAAGCCCCCCCCCCCTTTCTTCTTCTCTCTGTTTTTCGTTCTTGTTGTCTCTCTGTTTTTCTTAAACAAATCTTCTCTTTCCCTTATTATAATTCCCAAGTTTCTTATTTTATTATGTTCCAATCAAATATTTCAATACATATTGGTTGGGTTGCAACTATTTTTTTGCAACCCATGATGAAAAT

mRNA sequence

CAATTCCCATTTATTTATACATAAACCTCTCGATTCTAAATCCCATTAACATCAAATCAAAGCTGTTTCTTTTTTCTAGAAAAAACAAAAGAAAGAAATGGGGGATTGGGGCCCTGTTCTAATAGCTGTTATACTGTTCGTAGTTCTTAGCCCCGGCGTTCTGTTTCAGCTTCCCGGAAACGATAGAGTTGTGCAGTTCGTCAATATGCAGACCAGTGCCATCTCCGTCTTCGTTCACTCCATCATTTTCTTTGGCCTCATCACTATCTTTGTCATCGCCATTGGCGTTCATATTTCCTCTGGGTAGAAGTTAAAACTAAAGCCCCCCCCCCCTTTCTTCTTCTCTCTGTTTTTCGTTCTTGTTGTCTCTCTGTTTTTCTTAAACAAATCTTCTCTTTCCCTTATTATAATTCCCAAGTTTCTTATTTTATTATGTTCCAATCAAATATTTCAATACATATTGGTTGGGTTGCAACTATTTTTTTGCAACCCATGATGAAAAT

Coding sequence (CDS)

ATGGGGGATTGGGGCCCTGTTCTAATAGCTGTTATACTGTTCGTAGTTCTTAGCCCCGGCGTTCTGTTTCAGCTTCCCGGAAACGATAGAGTTGTGCAGTTCGTCAATATGCAGACCAGTGCCATCTCCGTCTTCGTTCACTCCATCATTTTCTTTGGCCTCATCACTATCTTTGTCATCGCCATTGGCGTTCATATTTCCTCTGGGTAG

Protein sequence

MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVIAIGVHISSG*

Homology

[Close]

BLAST of MELO3C008177 vs. TrEMBL
Match: A0A0A0LMX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406080 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.9e-28
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          MGDW PVLIAVILFVVLSPGVLFQLPGNDRVVQF+NMQTSAISVFVHSI FFGLITIFVI
Sbjct: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AI VHISSG
Sbjct: 61 AIDVHISSG 69

[Close]

BLAST of MELO3C008177 vs. TrEMBL
Match: B9RBG4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676560 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.9e-25
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          M DWGPV+IAV+LFVVLSPGVLFQLPGN RVV+F N+QTS +SVFVH+IIFFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of MELO3C008177 vs. TrEMBL
Match: I1MYD6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G005000 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.4e-23
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          M DWGPV+IAV+LFV+LSPG+LFQLPG  RVV+F NMQTSAIS+ VH+IIFFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRSRVVEFGNMQTSAISILVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI +G
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of MELO3C008177 vs. TrEMBL
Match: A0A0B2QW74_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_025226 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.4e-23
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          M DWGPV+IAV+LFV+LSPG+LFQLPG  RVV+F NMQTSAIS+ VH+IIFFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRSRVVEFGNMQTSAISILVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI +G
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of MELO3C008177 vs. TrEMBL
Match: A0A0D2TL02_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G085700 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.6e-23
Identity = 51/68 (75.00%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 2  GDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVIA 61
          GDWGPV++AV+LFV+ SPG+LFQLPGN R V+F N QTS IS+FVH+IIFFGL+TIFVIA
Sbjct: 3  GDWGPVVVAVVLFVLCSPGLLFQLPGNKRAVEFANFQTSPISIFVHTIIFFGLVTIFVIA 62

Query: 62 IGVHISSG 70
          IG+HI SG
Sbjct: 63 IGIHIYSG 70

[Close]

BLAST of MELO3C008177 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-24
Identity = 53/69 (76.81%), Postives = 56/69 (81.16%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          M DWGPVLIAVILFVVLSPG+LFQ+P   RVV+F NMQTS  S+ VH+IIFFGLITIF I
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIGVHISSG 70
          AI VHI SG
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of MELO3C008177 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-22
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          M DWGPV++AVILFV+L+PG+LFQ+P   RVV+F NMQTS  S+ VH+IIFFGLITIF I
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIGVHISSG 70
          AI +HI +G
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of MELO3C008177 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-20
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          M DWGPVL+ VILFV+L+PG+LFQLPG  + V+F N QTSA+SV VHS+++F L+ +F++
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIGVHISSG 70
          A+ +HI  G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of MELO3C008177 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 90.5 bits (223), Expect = 4.4e-19
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1


Query: 3  DWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVIAI 62
          DWGPV +AV+LFVVLSPG+LFQLP   RV++  NM TS IS+ VH+I+FF +ITI VIAI
Sbjct: 5  DWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIAI 64

Query: 63 GVHI 67
           +HI
Sbjct: 65 QIHI 68

[Close]

BLAST of MELO3C008177 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 89.7 bits (221), Expect = 7.5e-19
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 3  DWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVIAI 62
          DWGPV++AV LF++LSPG+LFQLP   RV++F NM TS IS+ VH+II+F ++TI +IAI
Sbjct: 4  DWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIAI 63

Query: 63 GVHI 67
           +HI
Sbjct: 64 QIHI 67

[Close]

BLAST of MELO3C008177 vs. NCBI nr
Match: gi|659081410|ref|XP_008441320.1| (PREDICTED: uncharacterized protein LOC103485470 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI
Sbjct: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AIGVHISSG
Sbjct: 61 AIGVHISSG 69

[Close]

BLAST of MELO3C008177 vs. NCBI nr
Match: gi|778673217|ref|XP_011649952.1| (PREDICTED: uncharacterized protein LOC101212375 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          MGDW PVLIAVILFVVLSPGVLFQLPGNDRVVQF+NMQTSAISVFVHSI FFGLITIFVI
Sbjct: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AI VHISSG
Sbjct: 61 AIDVHISSG 69

[Close]

BLAST of MELO3C008177 vs. NCBI nr
Match: gi|255536863|ref|XP_002509498.1| (PREDICTED: uncharacterized protein LOC8271433 [Ricinus communis])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          M DWGPV+IAV+LFVVLSPGVLFQLPGN RVV+F N+QTS +SVFVH+IIFFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of MELO3C008177 vs. NCBI nr
Match: gi|802539272|ref|XP_012070204.1| (PREDICTED: uncharacterized protein LOC105632430 [Jatropha curcas])

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-24
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          M DWGPV+IAV+LFVVLSPGVLFQLPG  RVV+FVNMQTS +SV VH+IIFFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGKSRVVEFVNMQTSGVSVLVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of MELO3C008177 vs. NCBI nr
Match: gi|565343159|ref|XP_006338707.1| (PREDICTED: uncharacterized protein LOC102580109 [Solanum tuberosum])

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-23
Identity = 52/69 (75.36%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60
          M DWGPV+IAV+LFV+LSPG+LFQLPGN+RVVQF N QTS +S+F+H+I+FFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGNNRVVQFANFQTSGLSIFIHTILFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI +G
Sbjct: 61 AIGVHIYTG 69

The following BLAST results are available for this feature:

BLAST of MELO3C008177 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMX4_CUCSA	9.9e-28	94.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406080 PE=4 SV=1	[more]
B9RBG4_RICCO	7.9e-25	81.16	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676560 PE=4 SV=1	[more]
I1MYD6_SOYBN	7.4e-23	78.26	Uncharacterized protein OS=Glycine max GN=GLYMA_18G005000 PE=4 SV=1	[more]
A0A0B2QW74_GLYSO	7.4e-23	78.26	Uncharacterized protein OS=Glycine soja GN=glysoja_025226 PE=4 SV=1	[more]
A0A0D2TL02_GOSRA	9.6e-23	75.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G085700 PE=4 SV=1	[more]

BLAST of MELO3C008177 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63500.1	2.0e-24	76.81	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.5e-22	68.12	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	3.1e-20	57.97	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	4.4e-19	65.63	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	7.5e-19	60.94	Protein of unknown function (DUF 3339)	[more]

BLAST of MELO3C008177 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081410\|ref\|XP_008441320.1\|	1.2e-29	100.00	PREDICTED: uncharacterized protein LOC103485470 [Cucumis melo]	[more]
gi\|778673217\|ref\|XP_011649952.1\|	1.4e-27	94.20	PREDICTED: uncharacterized protein LOC101212375 [Cucumis sativus]	[more]
gi\|255536863\|ref\|XP_002509498.1\|	1.1e-24	81.16	PREDICTED: uncharacterized protein LOC8271433 [Ricinus communis]	[more]
gi\|802539272\|ref\|XP_012070204.1\|	4.3e-24	81.16	PREDICTED: uncharacterized protein LOC105632430 [Jatropha curcas]	[more]
gi\|565343159\|ref\|XP_006338707.1\|	2.8e-23	75.36	PREDICTED: uncharacterized protein LOC102580109 [Solanum tuberosum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008177T1	MELO3C008177T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..66 score: 9.2
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 9.8
None	No IPR available	PANTHER	PTHR33128:SF9	SUBFAMILY NOT NAMED	coord: 1..69 score: 9.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008177	Csa2G406080	Cucumber (Chinese Long) v2	cumeB115
MELO3C008177	Cla003372	Watermelon (97103) v1	mewmB330
MELO3C008177	ClCG11G009450	Watermelon (Charleston Gray)	mewcgB270
MELO3C008177	Cla97C11G214560	Watermelon (97103) v2	mewmbB285
MELO3C008177	Bhi04G001995	Wax gourd	mewgoB341
MELO3C008177	CSPI02G25520	Wild cucumber (PI 183967)	cpimeB116
MELO3C008177	Cucsa.087800	Cucumber (Gy14) v1	cgymeB100
MELO3C008177	CmaCh04G029790	Cucurbita maxima (Rimu)	cmameB679
MELO3C008177	CmoCh04G031000	Cucurbita moschata (Rifu)	cmomeB671
MELO3C008177	Lsi03G004030	Bottle gourd (USVL1VR-Ls)	lsimeB259
MELO3C008177	Cp4.1LG01g26000	Cucurbita pepo (Zucchini)	cpemeB400
MELO3C008177	CsGy2G025150	Cucumber (Gy14) v2	cgybmeB099
MELO3C008177	Carg24282	Silver-seed gourd	carmeB0983
MELO3C008177	Carg06054	Silver-seed gourd	carmeB0023
MELO3C008177	CsaV3_2G034040	Cucumber (Chinese Long) v3	cucmeB121

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008177	Cucurbita maxima (Rimu)	cmameB267
MELO3C008177	Cucurbita moschata (Rifu)	cmomeB258
MELO3C008177	Cucurbita pepo (Zucchini)	cpemeB167