Csa2G406080 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G406080
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative uncharacterized protein OSJNBa0052M16.22; contains IPR021775 (Protein of unknown function DUF3339)
Location	Chr2 : 20962292 .. 20962501 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATTGGGCCCCTGTTCTAATAGCTGTTATACTGTTCGTAGTTCTTAGCCCCGGCGTTCTGTTTCAGCTTCCTGGAAATGACAGAGTTGTGCAGTTCATCAACATGCAAACCAGTGCCATCTCCGTCTTCGTTCACTCCATCTTTTTCTTTGGCCTCATCACTATCTTTGTCATCGCCATTGACGTCCATATTTCCTCTGGATAA

mRNA sequence

ATGGGGGATTGGGCCCCTGTTCTAATAGCTGTTATACTGTTCGTAGTTCTTAGCCCCGGCGTTCTGTTTCAGCTTCCTGGAAATGACAGAGTTGTGCAGTTCATCAACATGCAAACCAGTGCCATCTCCGTCTTCGTTCACTCCATCTTTTTCTTTGGCCTCATCACTATCTTTGTCATCGCCATTGACGTCCATATTTCCTCTGGATAA

Coding sequence (CDS)

ATGGGGGATTGGGCCCCTGTTCTAATAGCTGTTATACTGTTCGTAGTTCTTAGCCCCGGCGTTCTGTTTCAGCTTCCTGGAAATGACAGAGTTGTGCAGTTCATCAACATGCAAACCAGTGCCATCTCCGTCTTCGTTCACTCCATCTTTTTCTTTGGCCTCATCACTATCTTTGTCATCGCCATTGACGTCCATATTTCCTCTGGATAA

Protein sequence

MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVIAIDVHISSG*

Homology

[Close]

BLAST of Csa2G406080 vs. TrEMBL
Match: A0A0A0LMX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406080 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.1e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI
Sbjct: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60

Query: 61 AIDVHISSG 70
          AIDVHISSG
Sbjct: 61 AIDVHISSG 69

[Close]

BLAST of Csa2G406080 vs. TrEMBL
Match: B9RBG4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676560 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.6e-23
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          M DW PV+IAV+LFVVLSPGVLFQLPGN RVV+F N+QTS +SVFVH+I FFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIDVHISSG 70
          AI VHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Csa2G406080 vs. TrEMBL
Match: I1MYD6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G005000 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.0e-21
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          M DW PV+IAV+LFV+LSPG+LFQLPG  RVV+F NMQTSAIS+ VH+I FFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRSRVVEFGNMQTSAISILVHTIIFFGLITIFLI 60

Query: 61 AIDVHISSG 70
          AI VHI +G
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Csa2G406080 vs. TrEMBL
Match: A0A0B2QW74_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_025226 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.0e-21
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          M DW PV+IAV+LFV+LSPG+LFQLPG  RVV+F NMQTSAIS+ VH+I FFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRSRVVEFGNMQTSAISILVHTIIFFGLITIFLI 60

Query: 61 AIDVHISSG 70
          AI VHI +G
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Csa2G406080 vs. TrEMBL
Match: B9GZN7_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s16890g PE=4 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-20
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 1   MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
           M DW PV+IAV+LFV+LSPG+LFQLPG +RVV+F NMQTSA+S+ VH+I FFGLITIF+I
Sbjct: 37  MSDWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMQTSALSILVHTIIFFGLITIFLI 96

Query: 61  AIDVHISSG 70
           AI VHI +G
Sbjct: 97  AIGVHIYTG 105

[Close]

BLAST of Csa2G406080 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 104.4 bits (259), Expect = 3.0e-23
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          M DW PVLIAVILFVVLSPG+LFQ+P   RVV+F NMQTS  S+ VH+I FFGLITIF I
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIDVHISSG 70
          AI+VHI SG
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Csa2G406080 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 97.1 bits (240), Expect = 4.7e-21
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          M DW PV++AVILFV+L+PG+LFQ+P   RVV+F NMQTS  S+ VH+I FFGLITIF I
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIDVHISSG 70
          AI +HI +G
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of Csa2G406080 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-19
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          M DW PVL+ VILFV+L+PG+LFQLPG  + V+F N QTSA+SV VHS+ +F L+ +F++
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIDVHISSG 70
          A+ +HI  G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of Csa2G406080 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-18
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1


Query: 3  DWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVIAI 62
          DW PV +AV+LFVVLSPG+LFQLP   RV++  NM TS IS+ VH+I FF +ITI VIAI
Sbjct: 5  DWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIAI 64

Query: 63 DVHI 67
           +HI
Sbjct: 65 QIHI 68

[Close]

BLAST of Csa2G406080 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 86.3 bits (212), Expect = 8.3e-18
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 3  DWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVIAI 62
          DW PV++AV LF++LSPG+LFQLP   RV++F NM TS IS+ VH+I +F ++TI +IAI
Sbjct: 4  DWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIAI 63

Query: 63 DVHI 67
           +HI
Sbjct: 64 QIHI 67

[Close]

BLAST of Csa2G406080 vs. NCBI nr
Match: gi|778673217|ref|XP_011649952.1| (PREDICTED: uncharacterized protein LOC101212375 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI
Sbjct: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60

Query: 61 AIDVHISSG 70
          AIDVHISSG
Sbjct: 61 AIDVHISSG 69

[Close]

BLAST of Csa2G406080 vs. NCBI nr
Match: gi|659081410|ref|XP_008441320.1| (PREDICTED: uncharacterized protein LOC103485470 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          MGDW PVLIAVILFVVLSPGVLFQLPGNDRVVQF+NMQTSAISVFVHSI FFGLITIFVI
Sbjct: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60

Query: 61 AIDVHISSG 70
          AI VHISSG
Sbjct: 61 AIGVHISSG 69

[Close]

BLAST of Csa2G406080 vs. NCBI nr
Match: gi|255536863|ref|XP_002509498.1| (PREDICTED: uncharacterized protein LOC8271433 [Ricinus communis])

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-22
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          M DW PV+IAV+LFVVLSPGVLFQLPGN RVV+F N+QTS +SVFVH+I FFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIDVHISSG 70
          AI VHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Csa2G406080 vs. NCBI nr
Match: gi|802539272|ref|XP_012070204.1| (PREDICTED: uncharacterized protein LOC105632430 [Jatropha curcas])

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-22
Identity = 52/69 (75.36%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          M DW PV+IAV+LFVVLSPGVLFQLPG  RVV+F+NMQTS +SV VH+I FFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGKSRVVEFVNMQTSGVSVLVHTIIFFGLITIFLI 60

Query: 61 AIDVHISSG 70
          AI VHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Csa2G406080 vs. NCBI nr
Match: gi|565343159|ref|XP_006338707.1| (PREDICTED: uncharacterized protein LOC102580109 [Solanum tuberosum])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-21
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60
          M DW PV+IAV+LFV+LSPG+LFQLPGN+RVVQF N QTS +S+F+H+I FFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGNNRVVQFANFQTSGLSIFIHTILFFGLITIFLI 60

Query: 61 AIDVHISSG 70
          AI VHI +G
Sbjct: 61 AIGVHIYTG 69

The following BLAST results are available for this feature:

BLAST of Csa2G406080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMX4_CUCSA	8.1e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406080 PE=4 SV=1	[more]
B9RBG4_RICCO	9.6e-23	76.81	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676560 PE=4 SV=1	[more]
I1MYD6_SOYBN	9.0e-21	73.91	Uncharacterized protein OS=Glycine max GN=GLYMA_18G005000 PE=4 SV=1	[more]
A0A0B2QW74_GLYSO	9.0e-21	73.91	Uncharacterized protein OS=Glycine soja GN=glysoja_025226 PE=4 SV=1	[more]
B9GZN7_POPTR	1.2e-20	72.46	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s16890g P...	[more]

BLAST of Csa2G406080 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63500.1	3.0e-23	73.91	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	4.7e-21	65.22	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	2.6e-19	56.52	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	2.9e-18	64.06	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	8.3e-18	57.81	Protein of unknown function (DUF 3339)	[more]

BLAST of Csa2G406080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673217\|ref\|XP_011649952.1\|	1.2e-29	100.00	PREDICTED: uncharacterized protein LOC101212375 [Cucumis sativus]	[more]
gi\|659081410\|ref\|XP_008441320.1\|	1.4e-27	94.20	PREDICTED: uncharacterized protein LOC103485470 [Cucumis melo]	[more]
gi\|255536863\|ref\|XP_002509498.1\|	1.4e-22	76.81	PREDICTED: uncharacterized protein LOC8271433 [Ricinus communis]	[more]
gi\|802539272\|ref\|XP_012070204.1\|	5.2e-22	75.36	PREDICTED: uncharacterized protein LOC105632430 [Jatropha curcas]	[more]
gi\|565343159\|ref\|XP_006338707.1\|	2.0e-21	72.46	PREDICTED: uncharacterized protein LOC102580109 [Solanum tuberosum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G406080.1	Csa2G406080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..66 score: 7.7
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G406080	Cla003372	Watermelon (97103) v1	cuwmB160
Csa2G406080	MELO3C008177	Melon (DHL92) v3.5.1	cumeB115
Csa2G406080	ClCG11G009450	Watermelon (Charleston Gray)	cuwcgB098
Csa2G406080	Lsi03G004030	Bottle gourd (USVL1VR-Ls)	culsiB115
Csa2G406080	MELO3C008177.2	Melon (DHL92) v3.6.1	cumedB112
Csa2G406080	Cla97C11G214560	Watermelon (97103) v2	cuwmbB114
Csa2G406080	Bhi04G001995	Wax gourd	cuwgoB164
Csa2G406080	CSPI02G25520	Wild cucumber (PI 183967)	cpicuB065
Csa2G406080	Cucsa.087800	Cucumber (Gy14) v1	cgycuB090
Csa2G406080	CmaCh04G029790	Cucurbita maxima (Rimu)	cmacuB694
Csa2G406080	CmoCh04G031000	Cucurbita moschata (Rifu)	cmocuB684
Csa2G406080	Cp4.1LG01g26000	Cucurbita pepo (Zucchini)	cpecuB386
Csa2G406080	CsGy2G025150	Cucumber (Gy14) v2	cgybcuB057
Csa2G406080	Carg06054	Silver-seed gourd	carcuB0018
Csa2G406080	Carg24282	Silver-seed gourd	carcuB1024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G406080	Cucurbita maxima (Rimu)	cmacuB277
Csa2G406080	Cucurbita moschata (Rifu)	cmocuB264
Csa2G406080	Cucurbita pepo (Zucchini)	cpecuB167