CmoCh04G031000 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G031000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	GPI-anchored protein-like
Location	Cmo_Chr04 : 21568578 .. 21568790 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCAGATTGGGGACCGGTTGTCGTGGCGGTGGCGCTGTTCATTGTCCTGTCACCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATTTTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

mRNA sequence

ATGAGTGCAGATTGGGGACCGGTTGTCGTGGCGGTGGCGCTGTTCATTGTCCTGTCACCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATTTTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

Coding sequence (CDS)

ATGAGTGCAGATTGGGGACCGGTTGTCGTGGCGGTGGCGCTGTTCATTGTCCTGTCACCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATTTTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

Homology

[Close]

BLAST of CmoCh04G031000 vs. TrEMBL
Match: A0A0A0LQ54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406090 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.4e-26
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of CmoCh04G031000 vs. TrEMBL
Match: A0A151SQ49_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_003118 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-25
Identity = 62/70 (88.57%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL+
Sbjct: 6  MSADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILI 65

Query: 61 IAIGIHIHVN 71
          +AIGIHIH+N
Sbjct: 66 VAIGIHIHIN 75

[Close]

BLAST of CmoCh04G031000 vs. TrEMBL
Match: A0A0B2R8Q9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_040168 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.9e-25
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M ADWGPV++AVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTILV
Sbjct: 1  MGADWGPVIIAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIHVN 71
          +AIGIHIH+N
Sbjct: 61 VAIGIHIHIN 70

[Close]

BLAST of CmoCh04G031000 vs. TrEMBL
Match: V7CWH9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G092200g PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.9e-25
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M ADWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL+
Sbjct: 1  MGADWGPVIVAVALFILLSPGLLFQFPARFRVVEFGNMSTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIHVN 71
          +AIGIH+H+N
Sbjct: 61 VAIGIHVHIN 70

[Close]

BLAST of CmoCh04G031000 vs. TrEMBL
Match: A0A0S3RW63_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G224600 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.9e-25
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M ADWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAIL+HAIIFFCILTILV
Sbjct: 1  MGADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILIHAIIFFCILTILV 60

Query: 61 IAIGIHIHVN 71
          +AIGIHIH+N
Sbjct: 61 VAIGIHIHIN 70

[Close]

BLAST of CmoCh04G031000 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 114.0 bits (284), Expect = 3.7e-26
Identity = 59/68 (86.76%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPV+VAVALFI+LSPGLLFQLPAR RV+EFGNM+TSGI+ILVHAII+FCILTIL+
Sbjct: 1  MSADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILI 60

Query: 61 IAIGIHIH 69
          IAI IHIH
Sbjct: 61 IAIQIHIH 68

[Close]

BLAST of CmoCh04G031000 vs. TAIR10
Match: AT3G27027.1 (AT3G27027.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-25
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MS DWGPV+VAV+LFI+LSPGLLFQLPAR RVVEFGNM TSGIAILVHA I+FCILTILV
Sbjct: 1  MSTDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILV 60

Query: 61 IAIGIHIH 69
          IAI IHIH
Sbjct: 61 IAIQIHIH 68

[Close]

BLAST of CmoCh04G031000 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-22
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 3  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPV VAV LF+VLSPGLLFQLPAR RV+E GNM TSGI+ILVHAI+FF I+TILVIA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 63 IGIHIHV 70
          I IHIH+
Sbjct: 64 IQIHIHI 70

[Close]

BLAST of CmoCh04G031000 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 3  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPV++AV LF+VLSPGLLFQ+PA  RVVEFGNM TSG +ILVHAIIFF ++TI  IA
Sbjct: 2  ADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIA 61

Query: 63 IGIHIH 69
          I +HI+
Sbjct: 62 INVHIY 67

[Close]

BLAST of CmoCh04G031000 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 3  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPVVVAV LF++L+PGLLFQ+PAR RVVEFGNM TSG +ILVH IIFF ++TI  IA
Sbjct: 2  ADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIA 61

Query: 63 IGIHIH 69
          I +HI+
Sbjct: 62 IRLHIY 67

[Close]

BLAST of CmoCh04G031000 vs. NCBI nr
Match: gi|659081412|ref|XP_008441321.1| (PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 3.5e-26
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of CmoCh04G031000 vs. NCBI nr
Match: gi|1000983056|ref|XP_015571582.1| (PREDICTED: uncharacterized protein LOC8271434 [Ricinus communis])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 62/70 (88.57%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFI+LSPGLLFQLPAR RVVEFGNMNTSGIAIL+HA+I+FCI+TIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARTRVVEFGNMNTSGIAILIHAVIYFCIVTILI 60

Query: 61 IAIGIHIHVN 71
          +AIGIHIHVN
Sbjct: 61 VAIGIHIHVN 70

[Close]

BLAST of CmoCh04G031000 vs. NCBI nr
Match: gi|1012345677|gb|KYP56869.1| (hypothetical protein KK1_003118, partial [Cajanus cajan])

HSP 1 Score: 122.1 bits (305), Expect = 3.9e-25
Identity = 62/70 (88.57%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL+
Sbjct: 6  MSADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILI 65

Query: 61 IAIGIHIHVN 71
          +AIGIHIH+N
Sbjct: 66 VAIGIHIHIN 75

[Close]

BLAST of CmoCh04G031000 vs. NCBI nr
Match: gi|802539274|ref|XP_012070210.1| (PREDICTED: uncharacterized protein LOC105632436 [Jatropha curcas])

HSP 1 Score: 120.9 bits (302), Expect = 8.7e-25
Identity = 58/70 (82.86%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M ADWGPV++AVALFI+LSPGLLFQLPAR RV+EFGNMNTSGIAIL+HA+I+FCI+TIL+
Sbjct: 1  MGADWGPVIIAVALFILLSPGLLFQLPARTRVIEFGNMNTSGIAILIHAVIYFCIITILI 60

Query: 61 IAIGIHIHVN 71
          +AIGIHIHVN
Sbjct: 61 VAIGIHIHVN 70

[Close]

BLAST of CmoCh04G031000 vs. NCBI nr
Match: gi|965670185|dbj|BAT84792.1| (hypothetical protein VIGAN_04224600 [Vigna angularis var. angularis])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M ADWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAIL+HAIIFFCILTILV
Sbjct: 1  MGADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILIHAIIFFCILTILV 60

Query: 61 IAIGIHIHVN 71
          +AIGIHIH+N
Sbjct: 61 VAIGIHIHIN 70

The following BLAST results are available for this feature:

BLAST of CmoCh04G031000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G031000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ54_CUCSA	2.4e-26	97.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406090 PE=4 SV=1	[more]
A0A151SQ49_CAJCA	2.7e-25	88.57	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_003118 PE=4 SV=1	[more]
A0A0B2R8Q9_GLYSO	7.9e-25	87.14	Uncharacterized protein OS=Glycine soja GN=glysoja_040168 PE=4 SV=1	[more]
V7CWH9_PHAVU	7.9e-25	85.71	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G092200g PE=4 SV=1	[more]
A0A0S3RW63_PHAAN	7.9e-25	87.14	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G224600 PE=...	[more]

BLAST of CmoCh04G031000 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40980.1	3.7e-26	86.76	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	1.4e-25	86.76	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	2.5e-22	80.60	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.2e-19	72.73	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.0e-19	72.73	Protein of unknown function (DUF 3339)	[more]

BLAST of CmoCh04G031000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081412\|ref\|XP_008441321.1\|	3.5e-26	97.10	PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo]	[more]
gi\|1000983056\|ref\|XP_015571582.1\|	1.7e-25	88.57	PREDICTED: uncharacterized protein LOC8271434 [Ricinus communis]	[more]
gi\|1012345677\|gb\|KYP56869.1\|	3.9e-25	88.57	hypothetical protein KK1_003118, partial [Cajanus cajan]	[more]
gi\|802539274\|ref\|XP_012070210.1\|	8.7e-25	82.86	PREDICTED: uncharacterized protein LOC105632436 [Jatropha curcas]	[more]
gi\|965670185\|dbj\|BAT84792.1\|	1.1e-24	87.14	hypothetical protein VIGAN_04224600 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G031000.1	CmoCh04G031000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 3..68 score: 2.4
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..70 score: 1.9
None	No IPR available	PANTHER	PTHR33128:SF10	SUBFAMILY NOT NAMED	coord: 1..70 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G031000	Cucsa.087830	Cucumber (Gy14) v1	cgycmoB0166
CmoCh04G031000	CmaCh15G000730	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G031000	CmaCh04G029790	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G031000	Csa2G406080	Cucumber (Chinese Long) v2	cmocuB684
CmoCh04G031000	MELO3C008177	Melon (DHL92) v3.5.1	cmomeB671
CmoCh04G031000	CSPI02G25520	Wild cucumber (PI 183967)	cmocpiB695
CmoCh04G031000	Lsi03G004030	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G031000	Cp4.1LG13g11210	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G031000	Cp4.1LG01g26000	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G031000	MELO3C008177.2	Melon (DHL92) v3.6.1	cmomedB759
CmoCh04G031000	CsaV3_2G034040	Cucumber (Chinese Long) v3	cmocucB0812
CmoCh04G031000	Cla97C11G214560	Watermelon (97103) v2	cmowmbB705
CmoCh04G031000	CsGy2G025150	Cucumber (Gy14) v2	cgybcmoB236
CmoCh04G031000	Carg06054	Silver-seed gourd	carcmoB0033
CmoCh04G031000	Carg24282	Silver-seed gourd	carcmoB1360

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G031000	CmoCh15G000730	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G031000	Wax gourd	cmowgoB0857