CmoCh15G000730 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G000730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr15 : 390957 .. 391166 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATTGGGCACCGGTAGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCAGGGCTTCTGTTCCAGTTTCCGGGGAATAATCGACAGTTTGAGTTTGGGAGTATGAAGACCAACGGAAAGGCCATCGCCATTCACACGCTCATTTTCTTTATCCTTTACGCCGTCTTCATTCTCGCTCTCCGTATCCACATCTATACTGGCTGA

mRNA sequence

ATGTCGGATTGGGCACCGGTAGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCAGGGCTTCTGTTCCAGTTTCCGGGGAATAATCGACAGTTTGAGTTTGGGAGTATGAAGACCAACGGAAAGGCCATCGCCATTCACACGCTCATTTTCTTTATCCTTTACGCCGTCTTCATTCTCGCTCTCCGTATCCACATCTATACTGGCTGA

Coding sequence (CDS)

ATGTCGGATTGGGCACCGGTAGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCAGGGCTTCTGTTCCAGTTTCCGGGGAATAATCGACAGTTTGAGTTTGGGAGTATGAAGACCAACGGAAAGGCCATCGCCATTCACACGCTCATTTTCTTTATCCTTTACGCCGTCTTCATTCTCGCTCTCCGTATCCACATCTATACTGGCTGA

Homology

[Close]

BLAST of CmoCh15G000730 vs. TrEMBL
Match: A0A0A0LMK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406095 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKA+AIHTLIFF+LYAVFIL
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 61 ALRIHIYTG 70
          AL IHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of CmoCh15G000730 vs. TrEMBL
Match: A0A164VTJ6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021798 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.5e-25
Identity = 55/69 (79.71%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          M+DW PV+IGVVLF+LL PGLLFQFPGN++Q EFGSMKTNGK+IA+HTLIFF+LYA+F+L
Sbjct: 1  MADWGPVLIGVVLFILLQPGLLFQFPGNSKQLEFGSMKTNGKSIAVHTLIFFVLYAIFVL 60

Query: 61 ALRIHIYTG 70
          AL IHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of CmoCh15G000730 vs. TrEMBL
Match: A0A067LD19_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10107 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-24
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          M+DW PV+IGVVLFVLL+PGLLFQ PGN+RQ EFGSMKTNGKAIA+HTLIFF LYA+ IL
Sbjct: 1  MADWGPVLIGVVLFVLLTPGLLFQIPGNSRQLEFGSMKTNGKAIAVHTLIFFALYAILIL 60

Query: 61 ALRIHIYTG 70
          A+R+HIYTG
Sbjct: 61 AVRVHIYTG 69

[Close]

BLAST of CmoCh15G000730 vs. TrEMBL
Match: A0A067FKC6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035267mg PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.6e-24
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          M+DW PVVIGV+LFVLL PGLLFQ PG+NRQ EFGSMKTNGKAIA+H+LIFFILYA+ IL
Sbjct: 1  MADWGPVVIGVLLFVLLQPGLLFQLPGHNRQLEFGSMKTNGKAIAVHSLIFFILYAILIL 60

Query: 61 ALRIHIYTG 70
          A+ +HIYTG
Sbjct: 61 AVHVHIYTG 69

[Close]

BLAST of CmoCh15G000730 vs. TrEMBL
Match: I3SMX5_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_7g028940 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.6e-24
Identity = 58/69 (84.06%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFV L PGLLF FPGN +Q EFG MKTNGKAI IHTLIFF LYAV IL
Sbjct: 1  MSDWAPVVIGVVLFVFLQPGLLFSFPGNGKQLEFGGMKTNGKAIFIHTLIFFGLYAVIIL 60

Query: 61 ALRIHIYTG 70
          ALR+HIYTG
Sbjct: 61 ALRVHIYTG 69

[Close]

BLAST of CmoCh15G000730 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 110.9 bits (276), Expect = 3.1e-25
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
           M+DWAPV++GVVLFV+LSPGLLF  PGNNR  +FG +KTNGKAIA+HTLIFF +Y + IL
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133

Query: 61  ALRIHIYTG 70
           AL +HIYTG
Sbjct: 134 ALNLHIYTG 142

[Close]

BLAST of CmoCh15G000730 vs. TAIR10
Match: AT5G40970.1 (AT5G40970.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 100.9 bits (250), Expect = 3.2e-22
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          M+DWAPV++GVVLFV+LSPGLLF  PG++   +FG MKTNGKAIA+HTLIFF  Y + IL
Sbjct: 1  MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIFFAAYTILIL 60

Query: 61 ALRIHIYTG 70
          A+ +HI TG
Sbjct: 61 AVNLHITTG 69

[Close]

BLAST of CmoCh15G000730 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-19
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          M+DW PVV+ V+LFVLL+PGLLFQ P   R  EFG+M+T+G +I +HT+IFF L  +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 ALRIHIYTG 70
          A+R+HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of CmoCh15G000730 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 86.7 bits (213), Expect = 6.3e-18
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          M+DW PV+I V+LFV+LSPGLLFQ P   R  EFG+M+T+G +I +H +IFF L  +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 ALRIHIYTG 70
          A+ +HIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of CmoCh15G000730 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-17
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          MSDW PV++ V+LFV+L+PGLLFQ PG  +  EFG+ +T+  ++ +H+L++F L  VF+L
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 ALRIHIYTG 70
          AL+IHIY G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of CmoCh15G000730 vs. NCBI nr
Match: gi|659081414|ref|XP_008441322.1| (PREDICTED: uncharacterized protein LOC103485472 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 5.7e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKA+AIHTLIFF+LYAVFIL
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 61 ALRIHIYTG 70
          AL IHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of CmoCh15G000730 vs. NCBI nr
Match: gi|1021033053|gb|KZM90837.1| (hypothetical protein DCAR_021798 [Daucus carota subsp. sativus])

HSP 1 Score: 121.7 bits (304), Expect = 5.0e-25
Identity = 55/69 (79.71%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          M+DW PV+IGVVLF+LL PGLLFQFPGN++Q EFGSMKTNGK+IA+HTLIFF+LYA+F+L
Sbjct: 1  MADWGPVLIGVVLFILLQPGLLFQFPGNSKQLEFGSMKTNGKSIAVHTLIFFVLYAIFVL 60

Query: 61 ALRIHIYTG 70
          AL IHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of CmoCh15G000730 vs. NCBI nr
Match: gi|1009151971|ref|XP_015893840.1| (PREDICTED: uncharacterized protein LOC107427943 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 120.9 bits (302), Expect = 8.5e-25
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
           M+DWAPVVIGVVLFVLL PGLLFQFPG+++Q EFGSMKTNGKAIA+HTLIFF LY +FIL
Sbjct: 74  MADWAPVVIGVVLFVLLQPGLLFQFPGHHKQLEFGSMKTNGKAIAVHTLIFFALYCIFIL 133

Query: 61  ALRIHIYTG 70
           AL +HIYTG
Sbjct: 134 ALHVHIYTG 142

[Close]

BLAST of CmoCh15G000730 vs. NCBI nr
Match: gi|1009151967|ref|XP_015893838.1| (PREDICTED: uncharacterized protein LOC107427943 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 120.9 bits (302), Expect = 8.5e-25
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          M+DWAPVVIGVVLFVLL PGLLFQFPG+++Q EFGSMKTNGKAIA+HTLIFF LY +FIL
Sbjct: 1  MADWAPVVIGVVLFVLLQPGLLFQFPGHHKQLEFGSMKTNGKAIAVHTLIFFALYCIFIL 60

Query: 61 ALRIHIYTG 70
          AL +HIYTG
Sbjct: 61 ALHVHIYTG 69

[Close]

BLAST of CmoCh15G000730 vs. NCBI nr
Match: gi|802539280|ref|XP_012070240.1| (PREDICTED: uncharacterized protein LOC105632465 [Jatropha curcas])

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-24
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 60
          M+DW PV+IGVVLFVLL+PGLLFQ PGN+RQ EFGSMKTNGKAIA+HTLIFF LYA+ IL
Sbjct: 1  MADWGPVLIGVVLFVLLTPGLLFQIPGNSRQLEFGSMKTNGKAIAVHTLIFFALYAILIL 60

Query: 61 ALRIHIYTG 70
          A+R+HIYTG
Sbjct: 61 AVRVHIYTG 69

The following BLAST results are available for this feature:

BLAST of CmoCh15G000730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G000730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMK8_CUCSA	4.0e-29	95.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406095 PE=4 SV=1	[more]
A0A164VTJ6_DAUCA	3.5e-25	79.71	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021798 PE=4 SV=1	[more]
A0A067LD19_JATCU	1.7e-24	81.16	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10107 PE=4 SV=1	[more]
A0A067FKC6_CITSI	6.6e-24	79.71	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035267mg PE=4 SV=1	[more]
I3SMX5_MEDTR	8.6e-24	84.06	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_7g028940 PE=2 SV=1	[more]

BLAST of CmoCh15G000730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27030.1	3.1e-25	72.46	unknown protein	[more]
AT5G40970.1	3.2e-22	66.67	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	1.1e-19	59.42	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	6.3e-18	55.07	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	1.1e-17	53.62	Protein of unknown function (DUF 3339)	[more]

BLAST of CmoCh15G000730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081414\|ref\|XP_008441322.1\|	5.7e-29	95.65	PREDICTED: uncharacterized protein LOC103485472 [Cucumis melo]	[more]
gi\|1021033053\|gb\|KZM90837.1\|	5.0e-25	79.71	hypothetical protein DCAR_021798 [Daucus carota subsp. sativus]	[more]
gi\|1009151971\|ref\|XP_015893840.1\|	8.5e-25	82.61	PREDICTED: uncharacterized protein LOC107427943 isoform X2 [Ziziphus jujuba]	[more]
gi\|1009151967\|ref\|XP_015893838.1\|	8.5e-25	82.61	PREDICTED: uncharacterized protein LOC107427943 isoform X1 [Ziziphus jujuba]	[more]
gi\|802539280\|ref\|XP_012070240.1\|	2.5e-24	81.16	PREDICTED: uncharacterized protein LOC105632465 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G000730.1	CmoCh15G000730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 score: 4.8
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G000730	Cucsa.087820	Cucumber (Gy14) v1	cgycmoB0163
CmoCh15G000730	CmaCh04G029780	Cucurbita maxima (Rimu)	cmacmoB692
CmoCh15G000730	Cla003374	Watermelon (97103) v1	cmowmB277
CmoCh15G000730	MELO3C008178	Melon (DHL92) v3.5.1	cmomeB258
CmoCh15G000730	Cp4.1LG13g11210	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G000730	Bhi04G001995	Wax gourd	cmowgoB0392

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G000730	CmoCh04G031000	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G000730	Melon (DHL92) v3.6.1	cmomedB292
CmoCh15G000730	Silver-seed gourd	carcmoB0031
CmoCh15G000730	Silver-seed gourd	carcmoB1359
CmoCh15G000730	Cucumber (Chinese Long) v3	cmocucB0321
CmoCh15G000730	Watermelon (97103) v2	cmowmbB281
CmoCh15G000730	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G000730	Wild cucumber (PI 183967)	cmocpiB271
CmoCh15G000730	Cucumber (Chinese Long) v2	cmocuB264
CmoCh15G000730	Cucurbita pepo (Zucchini)	cmocpeB279
CmoCh15G000730	Bottle gourd (USVL1VR-Ls)	cmolsiB265
CmoCh15G000730	Cucumber (Gy14) v2	cgybcmoB182