CmaCh04G029780 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G029780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_135
Location	Cma_Chr04 : 19534194 .. 19534628 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAAAGCGTTATTTCTCGTTTCGATGCGGGAAGAGAGAGAGGAAAAGGAAAAGGTGGAACTCTGTTCAGTACCATTTCTCTTCTTCTTCATCATCTTCATCGCGTTTCTGCAAAGCCACTTTTTCTCTCGCTTTTTTCACCAAAGCTCTCTGCTACTTTGAGTTCCTCTTTTGATTTTTTTTCTTTTGGTTTAGTAAATTATTACGATATCTCTGACACGATGTCGGATTGGGCGCCAGTGGTGATCGGAGTTGTTCTGTTCGTGCTTCTCTCGCCAGGGCTTCTGTTCCAGTTCCCGGGGAATAATCGGCAGTTTGAGTTCGGGAGTATGAAGACTAACGGTAAAGCTGTAGTCATTCATACTCTCATCTTCTTCATCCTCTACGCCGTTTTCATTCTCGCTCTTCATGTCCACATCTACTCTGGATGA

mRNA sequence

ATGAAGCAAAGCGTTATTTCTCGTTTCGATGCGGGAAGAGAGAGAGGAAAAGGAAAAGGTGGAACTCTGTTCAGTACCATTTCTCTTCTTCTTCATCATCTTCATCGCGTTTCTGCAAAGCCACTTTTTCTCTCGCTTTTTTCACCAAAGCTCTCTGCTACTTTGAGTTCCTCTTTTGATTTTTTTTCTTTTGGTTTAGTAAATTATTACGATATCTCTGACACGATGTCGGATTGGGCGCCAGTGGTGATCGGAGTTGTTCTGTTCGTGCTTCTCTCGCCAGGGCTTCTGTTCCAGTTCCCGGGGAATAATCGGCAGTTTGAGTTCGGGAGTATGAAGACTAACGGTAAAGCTGTAGTCATTCATACTCTCATCTTCTTCATCCTCTACGCCGTTTTCATTCTCGCTCTTCATGTCCACATCTACTCTGGATGA

Coding sequence (CDS)

ATGAAGCAAAGCGTTATTTCTCGTTTCGATGCGGGAAGAGAGAGAGGAAAAGGAAAAGGTGGAACTCTGTTCAGTACCATTTCTCTTCTTCTTCATCATCTTCATCGCGTTTCTGCAAAGCCACTTTTTCTCTCGCTTTTTTCACCAAAGCTCTCTGCTACTTTGAGTTCCTCTTTTGATTTTTTTTCTTTTGGTTTAGTAAATTATTACGATATCTCTGACACGATGTCGGATTGGGCGCCAGTGGTGATCGGAGTTGTTCTGTTCGTGCTTCTCTCGCCAGGGCTTCTGTTCCAGTTCCCGGGGAATAATCGGCAGTTTGAGTTCGGGAGTATGAAGACTAACGGTAAAGCTGTAGTCATTCATACTCTCATCTTCTTCATCCTCTACGCCGTTTTCATTCTCGCTCTTCATGTCCACATCTACTCTGGATGA

Protein sequence

MKQSVISRFDAGRERGKGKGGTLFSTISLLLHHLHRVSAKPLFLSLFSPKLSATLSSSFDFFSFGLVNYYDISDTMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFILALHVHIYSG

Homology

[Close]

BLAST of CmaCh04G029780 vs. TrEMBL
Match: A0A0A0LMK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406095 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAV IHTLIFF+LYAVFIL
Sbjct: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 136 ALHVHIYSG 145
           ALH+HIY+G
Sbjct: 61  ALHIHIYTG 69

[Close]

BLAST of CmaCh04G029780 vs. TrEMBL
Match: A0A164VTJ6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021798 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-24
Identity = 52/69 (75.36%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           M+DW PV+IGVVLF+LL PGLLFQFPGN++Q EFGSMKTNGK++ +HTLIFF+LYA+F+L
Sbjct: 1   MADWGPVLIGVVLFILLQPGLLFQFPGNSKQLEFGSMKTNGKSIAVHTLIFFVLYAIFVL 60

Query: 136 ALHVHIYSG 145
           ALH+HIY+G
Sbjct: 61  ALHIHIYTG 69

[Close]

BLAST of CmaCh04G029780 vs. TrEMBL
Match: A0A067FKC6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035267mg PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-23
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           M+DW PVVIGV+LFVLL PGLLFQ PG+NRQ EFGSMKTNGKA+ +H+LIFFILYA+ IL
Sbjct: 1   MADWGPVVIGVLLFVLLQPGLLFQLPGHNRQLEFGSMKTNGKAIAVHSLIFFILYAILIL 60

Query: 136 ALHVHIYSG 145
           A+HVHIY+G
Sbjct: 61  AVHVHIYTG 69

[Close]

BLAST of CmaCh04G029780 vs. TrEMBL
Match: A0A068V855_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019177001 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-23
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           M+DW PV+IGVVLFVLL PGLLFQFPGNN+  EFGSMKTNGK++ +HTLIFF LYA+ IL
Sbjct: 1   MADWGPVLIGVVLFVLLQPGLLFQFPGNNKNLEFGSMKTNGKSIAVHTLIFFALYAILIL 60

Query: 136 ALHVHIYSG 145
           A+HVHIY+G
Sbjct: 61  AVHVHIYTG 69

[Close]

BLAST of CmaCh04G029780 vs. TrEMBL
Match: A0A061ED26_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017234 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-23
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           M+DWAPV++GVVLFVLLSPGLLF FPGN++Q EFGSMKTNGKA+ IHTL+FF +YAV IL
Sbjct: 67  MADWAPVLVGVVLFVLLSPGLLFSFPGNSKQLEFGSMKTNGKAITIHTLLFFAIYAVLIL 126

Query: 136 ALHVHIYSG 145
           A+H+HIY+G
Sbjct: 127 AVHLHIYTG 135

[Close]

BLAST of CmaCh04G029780 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 108.6 bits (270), Expect = 3.2e-24
Identity = 48/72 (66.67%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 73  SDTMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAV 132
           S +M+DWAPV++GVVLFV+LSPGLLF  PGNNR  +FG +KTNGKA+ +HTLIFF +Y +
Sbjct: 71  STSMADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTI 130

Query: 133 FILALHVHIYSG 145
            ILAL++HIY+G
Sbjct: 131 LILALNLHIYTG 142

[Close]

BLAST of CmaCh04G029780 vs. TAIR10
Match: AT5G40970.1 (AT5G40970.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 97.1 bits (240), Expect = 9.7e-21
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           M+DWAPV++GVVLFV+LSPGLLF  PG++   +FG MKTNGKA+ +HTLIFF  Y + IL
Sbjct: 1   MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIFFAAYTILIL 60

Query: 136 ALHVHIYSG 145
           A+++HI +G
Sbjct: 61  AVNLHITTG 69

[Close]

BLAST of CmaCh04G029780 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-18
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           M+DW PVV+ V+LFVLL+PGLLFQ P   R  EFG+M+T+G ++++HT+IFF L  +F +
Sbjct: 1   MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 136 ALHVHIYSG 145
           A+ +HIY+G
Sbjct: 61  AIRLHIYTG 69

[Close]

BLAST of CmaCh04G029780 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-18
Identity = 39/69 (56.52%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           M+DW PV+I V+LFV+LSPGLLFQ P   R  EFG+M+T+G ++++H +IFF L  +F +
Sbjct: 1   MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 136 ALHVHIYSG 145
           A++VHIYSG
Sbjct: 61  AINVHIYSG 69

[Close]

BLAST of CmaCh04G029780 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-17
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           MSDW PV++ V+LFV+L+PGLLFQ PG  +  EFG+ +T+  +V++H+L++F L  VF+L
Sbjct: 1   MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 136 ALHVHIYSG 145
           AL +HIY G
Sbjct: 61  ALKIHIYIG 69

[Close]

BLAST of CmaCh04G029780 vs. NCBI nr
Match: gi|659081414|ref|XP_008441322.1| (PREDICTED: uncharacterized protein LOC103485472 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-28
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAV IHTLIFF+LYAVFIL
Sbjct: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 136 ALHVHIYSG 145
           ALH+HIY+G
Sbjct: 61  ALHIHIYTG 69

[Close]

BLAST of CmaCh04G029780 vs. NCBI nr
Match: gi|1009151971|ref|XP_015893840.1| (PREDICTED: uncharacterized protein LOC107427943 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 122.1 bits (305), Expect = 8.0e-25
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 1


Query: 63  SFGLVNYYDISDTMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIH 122
           + G+  +   S  M+DWAPVVIGVVLFVLL PGLLFQFPG+++Q EFGSMKTNGKA+ +H
Sbjct: 61  AIGVHIFSGFSSAMADWAPVVIGVVLFVLLQPGLLFQFPGHHKQLEFGSMKTNGKAIAVH 120

Query: 123 TLIFFILYAVFILALHVHIYSG 145
           TLIFF LY +FILALHVHIY+G
Sbjct: 121 TLIFFALYCIFILALHVHIYTG 142

[Close]

BLAST of CmaCh04G029780 vs. NCBI nr
Match: gi|1021033053|gb|KZM90837.1| (hypothetical protein DCAR_021798 [Daucus carota subsp. sativus])

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-24
Identity = 52/69 (75.36%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           M+DW PV+IGVVLF+LL PGLLFQFPGN++Q EFGSMKTNGK++ +HTLIFF+LYA+F+L
Sbjct: 1   MADWGPVLIGVVLFILLQPGLLFQFPGNSKQLEFGSMKTNGKSIAVHTLIFFVLYAIFVL 60

Query: 136 ALHVHIYSG 145
           ALH+HIY+G
Sbjct: 61  ALHIHIYTG 69

[Close]

BLAST of CmaCh04G029780 vs. NCBI nr
Match: gi|1009151967|ref|XP_015893838.1| (PREDICTED: uncharacterized protein LOC107427943 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-24
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           M+DWAPVVIGVVLFVLL PGLLFQFPG+++Q EFGSMKTNGKA+ +HTLIFF LY +FIL
Sbjct: 1   MADWAPVVIGVVLFVLLQPGLLFQFPGHHKQLEFGSMKTNGKAIAVHTLIFFALYCIFIL 60

Query: 136 ALHVHIYSG 145
           ALHVHIY+G
Sbjct: 61  ALHVHIYTG 69

[Close]

BLAST of CmaCh04G029780 vs. NCBI nr
Match: gi|823254744|ref|XP_012460019.1| (PREDICTED: uncharacterized protein LOC105780313 [Gossypium raimondii])

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-23
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 76  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVVIHTLIFFILYAVFIL 135
           M+DWAPV+IGVVLFVLLSPGLLF FPGN++Q EFGSMKTNGKA+ IHTL+FF +YAV I+
Sbjct: 1   MADWAPVLIGVVLFVLLSPGLLFSFPGNSKQLEFGSMKTNGKAIAIHTLLFFAIYAVLIV 60

Query: 136 ALHVHIYSG 145
           ALH+HIY+G
Sbjct: 61  ALHIHIYTG 69

The following BLAST results are available for this feature:

BLAST of CmaCh04G029780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G029780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMK8_CUCSA	1.1e-28	94.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406095 PE=4 SV=1	[more]
A0A164VTJ6_DAUCA	1.6e-24	75.36	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021798 PE=4 SV=1	[more]
A0A067FKC6_CITSI	1.8e-23	78.26	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035267mg PE=4 SV=1	[more]
A0A068V855_COFCA	2.3e-23	76.81	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019177001 PE=4 SV=1	[more]
A0A061ED26_THECC	2.3e-23	76.81	Uncharacterized protein OS=Theobroma cacao GN=TCM_017234 PE=4 SV=1	[more]

BLAST of CmaCh04G029780 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27030.1	3.2e-24	66.67	unknown protein	[more]
AT5G40970.1	9.7e-21	62.32	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	3.5e-18	55.07	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	3.5e-18	56.52	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	2.9e-17	53.62	Protein of unknown function (DUF 3339)	[more]

BLAST of CmaCh04G029780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081414\|ref\|XP_008441322.1\|	1.6e-28	94.20	PREDICTED: uncharacterized protein LOC103485472 [Cucumis melo]	[more]
gi\|1009151971\|ref\|XP_015893840.1\|	8.0e-25	70.73	PREDICTED: uncharacterized protein LOC107427943 isoform X2 [Ziziphus jujuba]	[more]
gi\|1021033053\|gb\|KZM90837.1\|	2.3e-24	75.36	hypothetical protein DCAR_021798 [Daucus carota subsp. sativus]	[more]
gi\|1009151967\|ref\|XP_015893838.1\|	2.3e-24	81.16	PREDICTED: uncharacterized protein LOC107427943 isoform X1 [Ziziphus jujuba]	[more]
gi\|823254744\|ref\|XP_012460019.1\|	1.5e-23	78.26	PREDICTED: uncharacterized protein LOC105780313 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G029780.1	CmaCh04G029780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 76..142 score: 4.2
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 56..144 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G029780	Cucsa.087820	Cucumber (Gy14) v1	cgycmaB0171
CmaCh04G029780	MELO3C008178	Melon (DHL92) v3.5.1	cmameB679
CmaCh04G029780	CmoCh15G000730	Cucurbita moschata (Rifu)	cmacmoB692
CmaCh04G029780	Lsi03G004030	Bottle gourd (USVL1VR-Ls)	cmalsiB656
CmaCh04G029780	Cp4.1LG13g11210	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G029780	MELO3C008177.2	Melon (DHL92) v3.6.1	cmamedB762
CmaCh04G029780	CsaV3_2G034040	Cucumber (Chinese Long) v3	cmacucB0827
CmaCh04G029780	Cla97C11G214560	Watermelon (97103) v2	cmawmbB733
CmaCh04G029780	Bhi04G001995	Wax gourd	cmawgoB0860
CmaCh04G029780	CsGy2G025150	Cucumber (Gy14) v2	cgybcmaB248
CmaCh04G029780	Carg06053	Silver-seed gourd	carcmaB0033
CmaCh04G029780	Carg24282	Silver-seed gourd	carcmaB1403

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G029780	Wax gourd	cmawgoB0868
CmaCh04G029780	Cucurbita maxima (Rimu)	cmacmaB324
CmaCh04G029780	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G029780	Wild cucumber (PI 183967)	cmacpiB702
CmaCh04G029780	Cucumber (Chinese Long) v2	cmacuB694
CmaCh04G029780	Cucurbita pepo (Zucchini)	cmacpeB721