Lsi03G004030 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G004030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transmembrane protein, putative
Location	chr03 : 4630561 .. 4630773 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTGGGGTCCGGTTTTTGTGGCGGTTGTGCTGTTCGTTCTTCTAACTCCTGGATTGTTGGTTCAGATGCCAGGCAAGAACCGGTTTGTTGAATTTGGGAATTTTCAGACCAGTGGAGTCTCTATTCTGGTTCATTCCATTCTCTATTTTGCCTTGATCTGTATCTTCTTGCTGGCTGTTCATGTTCATGTTTATATGGGCTCCTAA

mRNA sequence

ATGGCGGATTGGGGTCCGGTTTTTGTGGCGGTTGTGCTGTTCGTTCTTCTAACTCCTGGATTGTTGGTTCAGATGCCAGGCAAGAACCGGTTTGTTGAATTTGGGAATTTTCAGACCAGTGGAGTCTCTATTCTGGTTCATTCCATTCTCTATTTTGCCTTGATCTGTATCTTCTTGCTGGCTGTTCATGTTCATGTTTATATGGGCTCCTAA

Coding sequence (CDS)

ATGGCGGATTGGGGTCCGGTTTTTGTGGCGGTTGTGCTGTTCGTTCTTCTAACTCCTGGATTGTTGGTTCAGATGCCAGGCAAGAACCGGTTTGTTGAATTTGGGAATTTTCAGACCAGTGGAGTCTCTATTCTGGTTCATTCCATTCTCTATTTTGCCTTGATCTGTATCTTCTTGCTGGCTGTTCATGTTCATGTTTATATGGGCTCCTAA

Protein sequence

MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLLAVHVHVYMGS

Homology

[Close]

BLAST of Lsi03G004030 vs. TrEMBL
Match: A0A061EEJ7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017235 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.2e-26
Identity = 59/70 (84.29%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAVVLF+LLTPGLL+Q+PGK+RF+EFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61 AVHVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

[Close]

BLAST of Lsi03G004030 vs. TrEMBL
Match: A0A059APQ4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01640 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.2e-26
Identity = 59/70 (84.29%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVA+VLFVLLTPGLL+Q+PGK+RF+EFGNFQTSG S+LVHSILYFAL+CIFLL
Sbjct: 1  MSDWGPVFVAMVLFVLLTPGLLIQIPGKHRFIEFGNFQTSGASVLVHSILYFALVCIFLL 60

Query: 61 AVHVHVYMGS 71
          AV VHVY+GS
Sbjct: 61 AVGVHVYIGS 70

[Close]

BLAST of Lsi03G004030 vs. TrEMBL
Match: B9N0Y0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09670g PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.5e-26
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAVVLF+LLTPGLL+QMPG +RF+EFGNF+TSGVSILVHSILYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQMPGHHRFIEFGNFKTSGVSILVHSILYFALICIFLL 60

Query: 61 AVHVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

[Close]

BLAST of Lsi03G004030 vs. TrEMBL
Match: A0A067LG52_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10108 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.1e-26
Identity = 59/69 (85.51%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAVVLF+LLTPGLL+Q+PG++RF+EFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGRHRFIEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVHVHVYMG 70
          AV VH+Y+G
Sbjct: 61 AVGVHMYLG 69

[Close]

BLAST of Lsi03G004030 vs. TrEMBL
Match: W9SAM3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010783 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-25
Identity = 57/70 (81.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAVVLF+LLTPGLL+Q+PGK+R +E+GNFQTSGVSILVHS+LYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGKSRMIEYGNFQTSGVSILVHSVLYFALICIFLL 60

Query: 61 AVHVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYLGS 70

[Close]

BLAST of Lsi03G004030 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-24
Identity = 46/69 (66.67%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPV V V+LFV+LTPGLL Q+PG+ ++VEFGNFQTS VS++VHS+LYF+L+C+FLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AVHVHVYMG 70
          A+ +H+Y+G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of Lsi03G004030 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-22
Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M DWGPVFVAV LFVLLTPGLL+Q+PG+ R VEFG FQTSG+S++VH+++YF L+CI LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AVHVHV 67
          A+ +H+
Sbjct: 61 ALQIHI 66

[Close]

BLAST of Lsi03G004030 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 100.1 bits (248), Expect = 5.6e-22
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPV VAV+LFVLLTPGLL Q+P + R VEFGN QTSG SILVH+I++F LI IF +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AVHVHVYMGS 71
          A+ +H+Y G+
Sbjct: 61 AIRLHIYTGT 70

[Close]

BLAST of Lsi03G004030 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 96.7 bits (239), Expect = 6.2e-21
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPV +AV+LFV+L+PGLL Q+P   R VEFGN QTSG SILVH+I++F LI IF +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AVHVHVYMG 70
          A++VH+Y G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Lsi03G004030 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-18
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 2  ADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLLA 61
          ADWGPV VAV LF+LL+PGLL Q+P + R +EFGN  TSG+SILVH+I+YF ++ I ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 VHVHVY 68
          + +H++
Sbjct: 63 IQIHIH 68

[Close]

BLAST of Lsi03G004030 vs. NCBI nr
Match: gi|659081418|ref|XP_008441325.1| (PREDICTED: uncharacterized protein LOC103485474 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-28
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAV+LFVLLTPGLLVQMPGK+RFVEFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVHVHVYMGS 71
          AV VHVYMGS
Sbjct: 61 AVRVHVYMGS 70

[Close]

BLAST of Lsi03G004030 vs. NCBI nr
Match: gi|658012060|ref|XP_008341292.1| (PREDICTED: uncharacterized protein LOC103404182 [Malus domestica])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-26
Identity = 60/70 (85.71%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVF+AVVLF+LLTPGLL+QMPGK+RFVEFGNFQTSGVSILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFIAVVLFILLTPGLLIQMPGKSRFVEFGNFQTSGVSILVHSIIYFALICIFLL 60

Query: 61 AVHVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]

BLAST of Lsi03G004030 vs. NCBI nr
Match: gi|645250211|ref|XP_008231104.1| (PREDICTED: uncharacterized protein LOC103330325 [Prunus mume])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAVVLF+LLTPGLL+QMPGK RFVEFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQMPGKGRFVEFGNFQTSGISILVHSIIYFALICIFLL 60

Query: 61 AVHVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]

BLAST of Lsi03G004030 vs. NCBI nr
Match: gi|743929890|ref|XP_011009186.1| (PREDICTED: uncharacterized protein LOC105114364 [Populus euphratica])

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-26
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAVVLF+LL+PGLL+QMPG NRF+EFGNF+TSGVSILVHSILYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLSPGLLIQMPGHNRFIEFGNFKTSGVSILVHSILYFALICIFLL 60

Query: 61 AVHVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

[Close]

BLAST of Lsi03G004030 vs. NCBI nr
Match: gi|590647455|ref|XP_007031906.1| (Uncharacterized protein TCM_017235 [Theobroma cacao])

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-26
Identity = 59/70 (84.29%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAVVLF+LLTPGLL+Q+PGK+RF+EFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61 AVHVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

The following BLAST results are available for this feature:

BLAST of Lsi03G004030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G004030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EEJ7_THECC	4.2e-26	84.29	Uncharacterized protein OS=Theobroma cacao GN=TCM_017235 PE=4 SV=1	[more]
A0A059APQ4_EUCGR	4.2e-26	84.29	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01640 PE=4 SV=1	[more]
B9N0Y0_POPTR	5.5e-26	85.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09670g PE=4 SV=1	[more]
A0A067LG52_JATCU	7.1e-26	85.51	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10108 PE=4 SV=1	[more]
W9SAM3_9ROSA	1.6e-25	81.43	Uncharacterized protein OS=Morus notabilis GN=L484_010783 PE=4 SV=1	[more]

BLAST of Lsi03G004030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08391.1	1.2e-24	66.67	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	1.5e-22	68.18	unknown protein	[more]
AT3G48660.1	5.6e-22	67.14	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	6.2e-21	65.22	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	1.3e-18	57.58	Protein of unknown function (DUF 3339)	[more]

BLAST of Lsi03G004030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081418\|ref\|XP_008441325.1\|	2.2e-28	95.71	PREDICTED: uncharacterized protein LOC103485474 [Cucumis melo]	[more]
gi\|658012060\|ref\|XP_008341292.1\|	1.2e-26	85.71	PREDICTED: uncharacterized protein LOC103404182 [Malus domestica]	[more]
gi\|645250211\|ref\|XP_008231104.1\|	1.6e-26	85.71	PREDICTED: uncharacterized protein LOC103330325 [Prunus mume]	[more]
gi\|743929890\|ref\|XP_011009186.1\|	6.0e-26	85.71	PREDICTED: uncharacterized protein LOC105114364 [Populus euphratica]	[more]
gi\|590647455\|ref\|XP_007031906.1\|	6.0e-26	84.29	Uncharacterized protein TCM_017235 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004030.1	Lsi03G004030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 score: 4.9
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 1.2
None	No IPR available	PANTHER	PTHR33128:SF14	SUBFAMILY NOT NAMED	coord: 1..69 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G004030	Csa2G406080	Cucumber (Chinese Long) v2	culsiB115
Lsi03G004030	CSPI02G25520	Wild cucumber (PI 183967)	cpilsiB113
Lsi03G004030	Cucsa.087800	Cucumber (Gy14) v1	cgylsiB098
Lsi03G004030	CmaCh04G029780	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G004030	CmaCh15G000730	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G004030	CmoCh04G031000	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G004030	CmoCh15G000720	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G004030	Cla003372	Watermelon (97103) v1	lsiwmB279
Lsi03G004030	MELO3C008177	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G004030	MELO3C008177.2	Melon (DHL92) v3.6.1	lsimedB272
Lsi03G004030	Cla97C11G214560	Watermelon (97103) v2	lsiwmbB223
Lsi03G004030	Bhi04G001993	Wax gourd	lsiwgoB322
Lsi03G004030	Cp4.1LG13g11200	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G004030	CsGy2G025150	Cucumber (Gy14) v2	cgyblsiB102
Lsi03G004030	Carg24282	Silver-seed gourd	carlsiB924
Lsi03G004030	CsaV3_2G034040	Cucumber (Chinese Long) v3	cuclsiB127

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G004030	Watermelon (Charleston Gray)	lsiwcgB229
Lsi03G004030	Silver-seed gourd	carlsiB017
Lsi03G004030	Cucurbita pepo (Zucchini)	cpelsiB339