CmoCh15G000720 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G000720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	GPI-anchored protein-like
Location	Cmo_Chr15 : 390053 .. 391193 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCAGACTGGGGGCCGGTTGTGGTAGCAGTGGCGCTCTTCATTCTCCTGTCGCCAGGGCTGCTTTTTCAGTTGCCGGCCAGAATCAGGGTGGTGGAGTTTGGGAACATGAACACCAGTGGGATTGCCATTTTGGTGCACGCCATCATATTCTTCTGCATACTCACCATATTGGTCATCGCAATTGGTATTCACATACACGTTTAACAACTTCATAATCTGCTTTGGCTACCTTCGCCAAATGAATTGCTTCTTTCTCACTAGGACTTACAGCATACTTCTGCCTACTCTGCTCCATTTCTTGTTCTCTTCTTCCCTTTCAACAATAACTTTCTATATTGTAATAATCTGTCTAAATGTAATCTATAATTTCCATTCTTTTTGGGGGTTAATAAGAAAGGTAAAGTTCAATGAACACTCTCGCGGTAATTGTTTGAATATTTTGAGCAAAATTCTTCTCTATTGTCTTAACGAATTGATCATACCCCTCTAGTAGCTTGCTTATACTAGGAGACTTCAACAAAAATTTGACCAGATTATCCGCGCTAAGACGAGTACCTTGTACTTGAGATGCGTTAAATTTATGAAACTAAAGAATAGAGGGAAAGAAAAAGAAGCTTCTCGATGAGCATGAGTAGCTACAGAGCCCAATGTTGGATGTATACTAGCAATGGAGGGATAGGCGTATGTAAAAACGAAATTAACAAACAAAATTCCTTTATCTCTTCCAAGTCTCCGACTACACATACACAAATCGCAAATCCAGACAGATCAAACAAGATCCGCTTCGAAAAGAAATACAAAACACAAGGCGGCACAAACATCACCAAGATTGCAGGAACTCCAGTTGGTAACAATCTCGAATGAAAACGGAAAGAGACGAGAATAAGAGGTTACCGGATCAGCCAGTATAGATGTGGATACGGAGAGCGAGAATGAAGACGGCGTAAAGGATAAAGAAAATGAGCGTGTGAATGGCGATGGCCTTTCCGTTGGTCTTCATACTCCCAAACTCAAACTGTCGATTATTCCCCGGAAACTGGAACAGAAGCCCTGGAGAGAGCAGTACGAACAGTACAACTCCGATCACTACCGGTGCCCAATCCGACATCCTTTCCCAGATTTCGTACTTCACTAG

mRNA sequence

ATGAATGCAGACTGGGGGCCGGTTGTGGTAGCAGTGGCGCTCTTCATTCTCCTGTCGCCAGGGCTGCTTTTTCAGTTGCCGGCCAGAATCAGGGTGGTGGAGTTTGGGAACATGAACACCAGTGGGATTGCCATTTTGGTGCACGCCATCATATTCTTCTGCATACTCACCATATTGGTCATCGCAATTGCCAGTATAGATGTGGATACGGAGAGCGAGAATGAAGACGGCGTAAAGGATAAAGAAAATGAGCGTGTGAATGGCGATGGCCTTTCCGTTGGTCTTCATACTCCCAAACTCAAACTGTCGATTATTCCCCGGAAACTGGAACAGAAGCCCTGGAGAGAGCAGTACGAACAGTACAACTCCGATCACTACCGGTGCCCAATCCGACATCCTTTCCCAGATTTCGTACTTCACTAG

Coding sequence (CDS)

ATGAATGCAGACTGGGGGCCGGTTGTGGTAGCAGTGGCGCTCTTCATTCTCCTGTCGCCAGGGCTGCTTTTTCAGTTGCCGGCCAGAATCAGGGTGGTGGAGTTTGGGAACATGAACACCAGTGGGATTGCCATTTTGGTGCACGCCATCATATTCTTCTGCATACTCACCATATTGGTCATCGCAATTGCCAGTATAGATGTGGATACGGAGAGCGAGAATGAAGACGGCGTAAAGGATAAAGAAAATGAGCGTGTGAATGGCGATGGCCTTTCCGTTGGTCTTCATACTCCCAAACTCAAACTGTCGATTATTCCCCGGAAACTGGAACAGAAGCCCTGGAGAGAGCAGTACGAACAGTACAACTCCGATCACTACCGGTGCCCAATCCGACATCCTTTCCCAGATTTCGTACTTCACTAG

Homology

[Close]

BLAST of CmoCh15G000720 vs. TrEMBL
Match: A0A067LCS8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10106 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 1


Query: 1   MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
           M ADWGPV++AVALFILLSPGLLFQLPAR RV+EFGNMNTSGIAIL+HA      L    
Sbjct: 1   MGADWGPVIIAVALFILLSPGLLFQLPARTRVIEFGNMNTSGIAILIHAPKAVKNLP--- 60

Query: 61  IAIASIDVDTESENEDGVKDKENERVNGDGLSVGLHTPKLKLSIIPRKLEQKPWR 116
              +SIDVDT  ++++ ++ ++ + VN   L+V LHT K +L  + R L++K WR
Sbjct: 61  -DSSSIDVDTNGQDQNSIESEKYKSVNSYCLAVSLHTSKFQLPAVSRYLKKKAWR 111

[Close]

BLAST of CmoCh15G000720 vs. TrEMBL
Match: A0A0A0LQ54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406090 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-23
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAI 64
          IAI
Sbjct: 61 IAI 63

[Close]

BLAST of CmoCh15G000720 vs. TrEMBL
Match: A0A151SQ49_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_003118 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPV+VAVALFILLSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL+
Sbjct: 6  MSADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILI 65

Query: 61 IAI 64
          +AI
Sbjct: 66 VAI 68

[Close]

BLAST of CmoCh15G000720 vs. TrEMBL
Match: V7CWH9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G092200g PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M ADWGPV+VAVALFILLSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL+
Sbjct: 1  MGADWGPVIVAVALFILLSPGLLFQFPARFRVVEFGNMSTSGIAILVHAIIFFCILTILI 60

Query: 61 IAI 64
          +AI
Sbjct: 61 VAI 63

[Close]

BLAST of CmoCh15G000720 vs. TrEMBL
Match: A0A0B2R8Q9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_040168 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-21
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M ADWGPV++AVALFILLSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTILV
Sbjct: 1  MGADWGPVIIAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILV 60

Query: 61 IAI 64
          +AI
Sbjct: 61 VAI 63

[Close]

BLAST of CmoCh15G000720 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-24
Identity = 55/63 (87.30%), Postives = 62/63 (98.41%), Query Frame = 1


Query: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPV+VAVALFILLSPGLLFQLPAR RV+EFGNM+TSGI+ILVHAII+FCILTIL+
Sbjct: 1  MSADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILI 60

Query: 61 IAI 64
          IAI
Sbjct: 61 IAI 63

[Close]

BLAST of CmoCh15G000720 vs. TAIR10
Match: AT3G27027.1 (AT3G27027.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 107.1 bits (266), Expect = 9.1e-24
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ DWGPV+VAV+LFILLSPGLLFQLPAR RVVEFGNM TSGIAILVHA I+FCILTILV
Sbjct: 1  MSTDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILV 60

Query: 61 IAI 64
          IAI
Sbjct: 61 IAI 63

[Close]

BLAST of CmoCh15G000720 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 94.4 bits (233), Expect = 6.1e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPV VAV LF++LSPGLLFQLPAR RV+E GNM TSGI+ILVHAI+FF I+TILVIA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 63 I 64
          I
Sbjct: 64 I 64

[Close]

BLAST of CmoCh15G000720 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 90.9 bits (224), Expect = 6.8e-19
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPVVVAV LF+LL+PGLLFQ+PAR RVVEFGNM TSG +ILVH IIFF ++TI  IA
Sbjct: 2  ADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIA 61

Query: 63 I 64
          I
Sbjct: 62 I 62

[Close]

BLAST of CmoCh15G000720 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 88.2 bits (217), Expect = 4.4e-18
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPV++AV LF++LSPGLLFQ+PA  RVVEFGNM TSG +ILVHAIIFF ++TI  IA
Sbjct: 2  ADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIA 61

Query: 63 I 64
          I
Sbjct: 62 I 62

[Close]

BLAST of CmoCh15G000720 vs. NCBI nr
Match: gi|643740676|gb|KDP46266.1| (hypothetical protein JCGZ_10106 [Jatropha curcas])

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 1


Query: 1   MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
           M ADWGPV++AVALFILLSPGLLFQLPAR RV+EFGNMNTSGIAIL+HA      L    
Sbjct: 1   MGADWGPVIIAVALFILLSPGLLFQLPARTRVIEFGNMNTSGIAILIHAPKAVKNLP--- 60

Query: 61  IAIASIDVDTESENEDGVKDKENERVNGDGLSVGLHTPKLKLSIIPRKLEQKPWR 116
              +SIDVDT  ++++ ++ ++ + VN   L+V LHT K +L  + R L++K WR
Sbjct: 61  -DSSSIDVDTNGQDQNSIESEKYKSVNSYCLAVSLHTSKFQLPAVSRYLKKKAWR 111

[Close]

BLAST of CmoCh15G000720 vs. NCBI nr
Match: gi|659081412|ref|XP_008441321.1| (PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-23
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAI 64
          IAI
Sbjct: 61 IAI 63

[Close]

BLAST of CmoCh15G000720 vs. NCBI nr
Match: gi|1000983056|ref|XP_015571582.1| (PREDICTED: uncharacterized protein LOC8271434 [Ricinus communis])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 55/63 (87.30%), Postives = 62/63 (98.41%), Query Frame = 1


Query: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPVVVAVALFILLSPGLLFQLPAR RVVEFGNMNTSGIAIL+HA+I+FCI+TIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARTRVVEFGNMNTSGIAILIHAVIYFCIVTILI 60

Query: 61 IAI 64
          +AI
Sbjct: 61 VAI 63

[Close]

BLAST of CmoCh15G000720 vs. NCBI nr
Match: gi|593797352|ref|XP_007161714.1| (hypothetical protein PHAVU_001G092200g [Phaseolus vulgaris])

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M ADWGPV+VAVALFILLSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL+
Sbjct: 1  MGADWGPVIVAVALFILLSPGLLFQFPARFRVVEFGNMSTSGIAILVHAIIFFCILTILI 60

Query: 61 IAI 64
          +AI
Sbjct: 61 VAI 63

[Close]

BLAST of CmoCh15G000720 vs. NCBI nr
Match: gi|1012345677|gb|KYP56869.1| (hypothetical protein KK1_003118, partial [Cajanus cajan])

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPV+VAVALFILLSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL+
Sbjct: 6  MSADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILI 65

Query: 61 IAI 64
          +AI
Sbjct: 66 VAI 68

The following BLAST results are available for this feature:

BLAST of CmoCh15G000720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G000720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067LCS8_JATCU	1.7e-23	55.65	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10106 PE=4 SV=1	[more]
A0A0A0LQ54_CUCSA	2.3e-23	96.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406090 PE=4 SV=1	[more]
A0A151SQ49_CAJCA	1.6e-21	88.89	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_003118 PE=4 SV=1	[more]
V7CWH9_PHAVU	1.6e-21	88.89	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G092200g PE=4 SV=1	[more]
A0A0B2R8Q9_GLYSO	2.1e-21	88.89	Uncharacterized protein OS=Glycine soja GN=glysoja_040168 PE=4 SV=1	[more]

BLAST of CmoCh15G000720 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40980.1	2.4e-24	87.30	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	9.1e-24	87.30	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	6.1e-20	80.33	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	6.8e-19	77.05	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	4.4e-18	73.77	Protein of unknown function (DUF 3339)	[more]

BLAST of CmoCh15G000720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|643740676\|gb\|KDP46266.1\|	2.5e-23	55.65	hypothetical protein JCGZ_10106 [Jatropha curcas]	[more]
gi\|659081412\|ref\|XP_008441321.1\|	3.3e-23	96.83	PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo]	[more]
gi\|1000983056\|ref\|XP_015571582.1\|	1.4e-21	87.30	PREDICTED: uncharacterized protein LOC8271434 [Ricinus communis]	[more]
gi\|593797352\|ref\|XP_007161714.1\|	2.3e-21	88.89	hypothetical protein PHAVU_001G092200g [Phaseolus vulgaris]	[more]
gi\|1012345677\|gb\|KYP56869.1\|	2.3e-21	88.89	hypothetical protein KK1_003118, partial [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G000720.1	CmoCh15G000720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 3..64 score: 6.2
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..71 score: 6.1
None	No IPR available	PANTHER	PTHR33128:SF10	SUBFAMILY NOT NAMED	coord: 1..71 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G000720	CmaCh15G000730	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G000720	CmaCh04G029790	Cucurbita maxima (Rimu)	cmacmoB692
CmoCh15G000720	Cla003373	Watermelon (97103) v1	cmowmB277
CmoCh15G000720	Csa2G406090	Cucumber (Chinese Long) v2	cmocuB264
CmoCh15G000720	CSPI02G25540	Wild cucumber (PI 183967)	cmocpiB271
CmoCh15G000720	Lsi03G004030	Bottle gourd (USVL1VR-Ls)	cmolsiB265
CmoCh15G000720	Cp4.1LG01g25960	Cucurbita pepo (Zucchini)	cmocpeB279
CmoCh15G000720	MELO3C008177.2	Melon (DHL92) v3.6.1	cmomedB292
CmoCh15G000720	CsaV3_2G034040	Cucumber (Chinese Long) v3	cmocucB0321
CmoCh15G000720	Cla97C11G214560	Watermelon (97103) v2	cmowmbB281
CmoCh15G000720	CsGy2G025150	Cucumber (Gy14) v2	cgybcmoB182
CmoCh15G000720	Carg06053	Silver-seed gourd	carcmoB0031
CmoCh15G000720	Carg24282	Silver-seed gourd	carcmoB1359

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G000720	Wax gourd	cmowgoB0392
CmoCh15G000720	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh15G000720	Cucumber (Gy14) v1	cgycmoB0163
CmoCh15G000720	Melon (DHL92) v3.5.1	cmomeB258
CmoCh15G000720	Cucurbita pepo (Zucchini)	cmocpeB268