Cp4.1LG01g25960 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g25960
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBnaC07g49000D protein
LocationCp4.1LG01 : 20989978 .. 20990256 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCGTAGAGGATGAAGAAGATGAGAGTATGAATGACTACAGCTTTACCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAGAGAAGCACGAACAGAACAACTCCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCGTAATAATTTACTAA

mRNA sequence

ATGAAAGCGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCGTAGAGGATGAAGAAGATGAGAGTATGAATGACTACAGCTTTACCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAGAGAAGCACGAACAGAACAACTCCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCGTAATAATTTACTAA

Coding sequence (CDS)

ATGAAAGCGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCGTAGAGGATGAAGAAGATGAGAGTATGAATGACTACAGCTTTACCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAGAGAAGCACGAACAGAACAACTCCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCGTAATAATTTACTAA

Protein sequence

MKAEEGREEEVTGSSRVDVDMKSENEDGVEDEEDESMNDYSFTVSLHTPELKLPIIPRELEQKPWREKHEQNNSDHHWRPIRHRVRDIVIIY
Homology
[Close]
BLAST of Cp4.1LG01g25960 vs. TrEMBL
Match: A0A0A0LT04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406100 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-11
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 21 MKSENEDGVEDEEDESMNDYSFTVSLHTPELKLPIIPRELEQKPWREKHEQNNSDHHWRP 80
          M+SENED +EDEEDES+   SF++ LH P+LKL II R+L+QK  R+++E+ NSD H  P
Sbjct: 1  MESENEDSIEDEEDESVYSNSFSIGLHAPKLKLAIITRKLKQKARRKQYEEYNSDDHRCP 60

Query: 81 IRHRVRDIV 90
          IRH  RD V
Sbjct: 61 IRHSFRDTV 69

[Close]
BLAST of Cp4.1LG01g25960 vs. TrEMBL
Match: A0A0B2R840_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_040169 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-09
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1 

Query: 12 TGSSRVDVDMKSENEDGVEDEEDESMNDYSFTVSLHTPELKLPIIPRELEQKPWREKHEQ 71
          TGS+ VD+D   E+EDGVE EEDE +++  F V LH  ELKL  +PR+ E++P  E+HEQ
Sbjct: 8  TGSAGVDMDFNGEDEDGVEREEDERVDENGFAVGLHATELKLLPVPRKGEKQPRLEQHEQ 67

Query: 72 NNSDHHWRPIRHRVRD 88
          N  D +  PI H + D
Sbjct: 68 NYPDQNRCPISHFLTD 83

[Close]
BLAST of Cp4.1LG01g25960 vs. NCBI nr
Match: gi|700208042|gb|KGN63161.1| (hypothetical protein Csa_2G406100 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 21 MKSENEDGVEDEEDESMNDYSFTVSLHTPELKLPIIPRELEQKPWREKHEQNNSDHHWRP 80
          M+SENED +EDEEDES+   SF++ LH P+LKL II R+L+QK  R+++E+ NSD H  P
Sbjct: 1  MESENEDSIEDEEDESVYSNSFSIGLHAPKLKLAIITRKLKQKARRKQYEEYNSDDHRCP 60

Query: 81 IRHRVRDIV 90
          IRH  RD V
Sbjct: 61 IRHSFRDTV 69

[Close]
BLAST of Cp4.1LG01g25960 vs. NCBI nr
Match: gi|734393656|gb|KHN28289.1| (hypothetical protein glysoja_040169 [Glycine soja])

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-09
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1 

Query: 12 TGSSRVDVDMKSENEDGVEDEEDESMNDYSFTVSLHTPELKLPIIPRELEQKPWREKHEQ 71
          TGS+ VD+D   E+EDGVE EEDE +++  F V LH  ELKL  +PR+ E++P  E+HEQ
Sbjct: 8  TGSAGVDMDFNGEDEDGVEREEDERVDENGFAVGLHATELKLLPVPRKGEKQPRLEQHEQ 67

Query: 72 NNSDHHWRPIRHRVRD 88
          N  D +  PI H + D
Sbjct: 68 NYPDQNRCPISHFLTD 83

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g25960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g25960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT04_CUCSA1.0e-1157.97Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406100 PE=4 SV=1[more]
A0A0B2R840_GLYSO3.6e-0950.00Uncharacterized protein OS=Glycine soja GN=glysoja_040169 PE=4 SV=1[more]
BLAST of Cp4.1LG01g25960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g25960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208042|gb|KGN63161.1|1.4e-1157.97hypothetical protein Csa_2G406100 [Cucumis sativus][more]
gi|734393656|gb|KHN28289.1|5.1e-0950.00hypothetical protein glysoja_040169 [Glycine soja][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g25960.1Cp4.1LG01g25960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g25960CmaCh15G000730Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g25960CmoCh15G000720Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g25960CmoCh04G030980Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g25960CSPI02G25540Wild cucumber (PI 183967)cpecpiB385
Cp4.1LG01g25960MELO3C029837.2Melon (DHL92) v3.6.1cpemedB465
Cp4.1LG01g25960CsaV3_2G034050Cucumber (Chinese Long) v3cpecucB0482
Cp4.1LG01g25960Bhi04G001994Wax gourdcpewgoB0525
Cp4.1LG01g25960CsGy2G025170Cucumber (Gy14) v2cgybcpeB214
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g25960Cucumber (Chinese Long) v2cpecuB386
Cp4.1LG01g25960Bottle gourd (USVL1VR-Ls)cpelsiB339
Cp4.1LG01g25960Melon (DHL92) v3.5.1cpemeB400
Cp4.1LG01g25960Silver-seed gourdcarcpeB0034
Cp4.1LG01g25960Silver-seed gourdcarcpeB1408
Cp4.1LG01g25960Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g25960Cucumber (Gy14) v1cgycpeB0164
Cp4.1LG01g25960Cucurbita maxima (Rimu)cmacpeB721