CsGy2G025170 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G025170
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	GPI-anchored-like protein (DUF 3339)
Location	Chr2 : 32718400 .. 32719535 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCAGACTGGGGTCCAGTTGTGGTGGCGGTGGCGTTGTTCATTCTCCTCTCCCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGCAATATGAACACCAGTGGAATTGCCATTTTGGTACATGCCATCATATTCTTCTGCATACTCACCATATTGATCATTGCAATTGGTATTCACATACACGTTTAGCAAGTTCATCATTTGCTTTGGCTATACCTTCAGCAAATGAATTGCTTGATCCTTTTTTTTTCTCTCCATTTTCACTAGGATTTTAGCCTATATTTTCCTTCATTTCTTGTTTTCTTCTTCCCTTTCAACAATAACTTACTATGTTGTAATCTGCCTAAATGTAAACTATAATTTCCATTCTTTTTGGGGGTTAATAAGAAAGGTAAAGTTCTGTAAACAGTCATATCTCGAGCAAAGTTCTTCTCATTTTTCTTACCAATTGACAATAATATACTTATTATCGCTTGCTTTCACCATGAAACAAATCAGATTTATTCCAAAAAAATTAGCGAGATTATCCGCACTAAAACGAATTTCTTGTTCTTGAGATGCGTGAAATTTATGAAATCAAAGAATAGAGTGAAAGAAAAAGAAAGTTCTCGATAAGAAAAGAGTAGCTACAGAGTCCAATGTTAATTAGATCTACACTAACAATGGAGGAATAGGCGTATGTAAAAACGAAATTAACGTACAAAATGCCTTTTAATGCTTCCAAGTCTCCGACTACAGAAATAACAAATACAGACAGATCAAACAAGATCCTCTTCAAAAATAAATACAACACACAAGGCAGCAGAAACATCAGCAGCTTCAGTTGGTAAGAATCTGGAAGGAAAAGAAAAGAGAAACAAGAAGAAGAGATTACCGGATCAGCCAGTGTAGATGTGGATATGGAGAGCGAGAATGAAGACAGCATAGAGGACGAAGAAGATGAGAGTGTGTATAGCAACAGCTTTTCCATTGGTCTTCATGCTCCCAAACTCAAACTGGCGATTATTACCCGGAAACTGAAACAGAAGGCCAGGAGAAAGCAGTACGAAGAGTACAACTCCGATGACCACCGGTGCCCAATCCGACATAGTTTCAGAGATACCGTAAATCAGTAA

mRNA sequence

ATGAGTGCAGACTGGGGTCCAGTTGTGGTGGCGGTGGCGTTGTTCATTCTCCTCTCCCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGCAATATGAACACCAGTGGAATTGCCATTTTGGTACATGCCATCATATTCTTCTGCATACTCACCATATTGATCATTGCAATTGCCAGTGTAGATGTGGATATGGAGAGCGAGAATGAAGACAGCATAGAGGACGAAGAAGATGAGAGTGTGTATAGCAACAGCTTTTCCATTGGTCTTCATGCTCCCAAACTCAAACTGGCGATTATTACCCGGAAACTGAAACAGAAGGCCAGGAGAAAGCAGTACGAAGAGTACAACTCCGATGACCACCGGTGCCCAATCCGACATAGTTTCAGAGATACCGTAAATCAGTAA

Coding sequence (CDS)

ATGAGTGCAGACTGGGGTCCAGTTGTGGTGGCGGTGGCGTTGTTCATTCTCCTCTCCCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGCAATATGAACACCAGTGGAATTGCCATTTTGGTACATGCCATCATATTCTTCTGCATACTCACCATATTGATCATTGCAATTGCCAGTGTAGATGTGGATATGGAGAGCGAGAATGAAGACAGCATAGAGGACGAAGAAGATGAGAGTGTGTATAGCAACAGCTTTTCCATTGGTCTTCATGCTCCCAAACTCAAACTGGCGATTATTACCCGGAAACTGAAACAGAAGGCCAGGAGAAAGCAGTACGAAGAGTACAACTCCGATGACCACCGGTGCCCAATCCGACATAGTTTCAGAGATACCGTAAATCAGTAA

Protein sequence

MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILIIAIASVDVDMESENEDSIEDEEDESVYSNSFSIGLHAPKLKLAIITRKLKQKARRKQYEEYNSDDHRCPIRHSFRDTVNQ

Homology

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BLAST of CsGy2G025170 vs. NCBI nr
Match: XP_008441321.1 (PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 PREDICTED: uncharacterized protein LOC105434681 [Cucumis sativus] >KGN63159.1 hypothetical protein Csa_2G406090 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 7.8e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsGy2G025170 vs. NCBI nr
Match: XP_022134305.1 (uncharacterized protein LOC111006600 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVV+AVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsGy2G025170 vs. NCBI nr
Match: XP_022961461.1 (uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 uncharacterized protein LOC111487624 [Cucurbita maxima] >XP_023522991.1 uncharacterized protein LOC111787076 [Cucurbita pepo subsp. pepo] >XP_023544168.1 uncharacterized protein LOC111803819 [Cucurbita pepo subsp. pepo] >XP_023544180.1 uncharacterized protein LOC111803828 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsGy2G025170 vs. NCBI nr
Match: XP_022939393.1 (uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 uncharacterized protein LOC111489052 [Cucurbita maxima] >XP_023550674.1 uncharacterized protein LOC111808749 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          M+ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsGy2G025170 vs. NCBI nr
Match: XP_015571582.1 (uncharacterized protein LOC8271434 [Ricinus communis])

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-19
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAVALFILLSPGLLFQLPAR RVVEFGNMNTSGIAIL+HA+I+FCI+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARTRVVEFGNMNTSGIAILIHAVIYFCIV 56

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BLAST of CsGy2G025170 vs. TAIR10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-22
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPV+VAVALFILLSPGLLFQLPAR RV+EFGNM+TSGI+ILVHAII+FCIL
Sbjct: 1  MSADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCIL 56

[Close]

BLAST of CsGy2G025170 vs. TAIR10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-21
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MS DWGPV+VAV+LFILLSPGLLFQLPAR RVVEFGNM TSGIAILVHA I+FCIL
Sbjct: 1  MSTDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCIL 56

[Close]

BLAST of CsGy2G025170 vs. TAIR10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          ADWGPV VAV LF++LSPGLLFQLPAR RV+E GNM TSGI+ILVHAI+FF I+
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAII 57

[Close]

BLAST of CsGy2G025170 vs. TAIR10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          ADWGPVVVAV LF+LL+PGLLFQ+PAR RVVEFGNM TSG +ILVH IIFF ++
Sbjct: 2  ADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLI 55

[Close]

BLAST of CsGy2G025170 vs. TAIR10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-16
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          ADWGPV++AV LF++LSPGLLFQ+PA  RVVEFGNM TSG +ILVHAIIFF ++
Sbjct: 2  ADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLI 55

[Close]

BLAST of CsGy2G025170 vs. TrEMBL
Match: tr|A0A1S3B3T8|A0A1S3B3T8_CUCME (uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.1e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsGy2G025170 vs. TrEMBL
Match: tr|A0A0A0LQ54|A0A0A0LQ54_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.1e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsGy2G025170 vs. TrEMBL
Match: tr|A0A151SQ49|A0A151SQ49_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_003118 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPV+VAVALFILLSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCIL
Sbjct: 6  MSADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCIL 61

[Close]

BLAST of CsGy2G025170 vs. TrEMBL
Match: tr|A0A2C9UGI6|A0A2C9UGI6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G162400 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCI 56
          MSADWGPVVVAV LFILLSPGLLFQLP+RIRVVEFGNMNTSGIAILVHA+I+FCI
Sbjct: 1  MSADWGPVVVAVVLFILLSPGLLFQLPSRIRVVEFGNMNTSGIAILVHAVIYFCI 55

[Close]

BLAST of CsGy2G025170 vs. TrEMBL
Match: tr|A0A2C9U6D8|A0A2C9U6D8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102300 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-19
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAV LFILLSPGLLFQLPAR RVVEFGNMNTSGIAIL+HA+I+FCI+
Sbjct: 1  MSADWGPVVVAVVLFILLSPGLLFQLPARTRVVEFGNMNTSGIAILIHAVIYFCII 56

The following BLAST results are available for this feature:

BLAST of CsGy2G025170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441321.1	7.8e-21	100.00	PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 P...	[more]
XP_022134305.1	1.0e-20	98.21	uncharacterized protein LOC111006600 [Momordica charantia]	[more]
XP_022961461.1	1.7e-20	98.21	uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 unchar...	[more]
XP_022939393.1	1.7e-20	98.21	uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 unchar...	[more]
XP_015571582.1	2.5e-19	91.07	uncharacterized protein LOC8271434 [Ricinus communis]	[more]

BLAST of CsGy2G025170 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40980.1	2.9e-22	89.29	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	1.5e-21	87.50	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	2.2e-17	77.78	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.8e-17	77.78	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.8e-16	74.07	Protein of unknown function (DUF 3339)	[more]

BLAST of CsGy2G025170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G025170 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B3T8\|A0A1S3B3T8_CUCME	5.1e-21	100.00	uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=...	[more]
tr\|A0A0A0LQ54\|A0A0A0LQ54_CUCSA	5.1e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1	[more]
tr\|A0A151SQ49\|A0A151SQ49_CAJCA	2.8e-19	92.86	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_003118 PE=4 S...	[more]
tr\|A0A2C9UGI6\|A0A2C9UGI6_MANES	2.8e-19	92.73	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G162400 PE=4 SV=...	[more]
tr\|A0A2C9U6D8\|A0A2C9U6D8_MANES	3.7e-19	89.29	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102300 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G025170.1	CsGy2G025170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 3..64 e-value: 9.5E-30 score: 102.5
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..64
None	No IPR available	PANTHER	PTHR33128:SF10	SUBFAMILY NOT NAMED	coord: 1..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G025170	CmoCh04G030980	Cucurbita moschata (Rifu)	cgybcmoB236
CsGy2G025170	Cp4.1LG01g25960	Cucurbita pepo (Zucchini)	cgybcpeB214
CsGy2G025170	Cla97C11G214580	Watermelon (97103) v2	cgybwmbB108
CsGy2G025170	Bhi04G001993	Wax gourd	cgybwgoB159

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G025170	Cucurbita pepo (Zucchini)	cgybcpeB183
CsGy2G025170	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G025170	Bottle gourd (USVL1VR-Ls)	cgyblsiB102
CsGy2G025170	Melon (DHL92) v3.5.1	cgybmeB099
CsGy2G025170	Melon (DHL92) v3.6.1	cgybmedB098
CsGy2G025170	Watermelon (Charleston Gray)	cgybwcgB098
CsGy2G025170	Watermelon (97103) v1	cgybwmB153
CsGy2G025170	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G025170	Silver-seed gourd	carcgybB0017
CsGy2G025170	Silver-seed gourd	carcgybB0996
CsGy2G025170	Cucumber (Chinese Long) v3	cgybcucB065
CsGy2G025170	Cucurbita maxima (Rimu)	cgybcmaB189
CsGy2G025170	Cucurbita maxima (Rimu)	cgybcmaB248
CsGy2G025170	Cucurbita moschata (Rifu)	cgybcmoB182