CmoCh04G030980 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G030980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 21566437 .. 21567902 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCATAGAGGATGAAGAAGATGAGAGTATGAATGACTACAGCTTTGCCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAAAGCAGCACGAACAGAACAACTCCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCGTAATAATTTACTAAACCAGAAAAAAAAAATCAAAAGAGGAACTCAAAGTAGCAGAGAGCTTCGGCGAAAAAAGCGAGAGAAAAAGTGGCTTTGCAGAAACGCGATGAAGATGATGAAGAAGAAGAGAAATGGAATTCAACGGAGTTCCACCTTTTCTTTTTCCTCTCTCTCTCTCCGCATCGAAACGAGAAGTAACGCTTTGCTTCATGATTCGAAAATTATGGGAATCCGAGAAGTTATTGTTAATTACGAGAATGACACTAGCTTAGTGGCAATGCTTACTGAACTAGGGAAGTTTATTGTCTGCAGGCGGTAGTGGCTAATTACTTTGTAATCGTTCATGAGAGCCCATTAGTTAAGTGCTAAATGGGCCCAGTGGGCCATATTTGGATGACGACGTGGGCCAGACCATGGACGGGCTCGGCGGTCGAATAAGCGGGAAGGGAAAAAGGGTGGTCGAGAAACAATGGTGGATTTACGTGCAATATGCTCTCGCTTTTTTTATTATTATTATTATTTTTTTACCAATAATTGTATTAAAAAAAAAAAAAAGAGAGAAGAATTATATTGAAAAATGGTTGATATAAATAATATAAAAACAAAATAATAACAGTCGAAAAATTAGCGATATAACCATTTATATATATTTTTTCAAATAGTACACAAATTTATTTCATTCATAAAATGAGTTCATGTTAATGTGAACGCTTTTTGCTTGAGAACGAACCAATATTGATTTAAACTCTCTGTTCAGTTTCTCTGGAATTTTATGTAATGGATTATTTTTCAGAAAAAAATTTAAAGAAATTTATTATTATTTATTTATTTAATTCAAAGAGGTTCTTATTTATAAAACATTACGGTCTCCCCTTCTGTATTAATAAATCTTAATTTGAACTTTTTTTTTTTTTTTATGACAAAGAAAGGGTTTAAAAAGATGGCTTAGTTTAATTTCGCCCTTAAATATTAGGTTATTTACTAAAGAACCATATGTGATAATGCGCATTATATTAACGAAAGAAATTAACGCCAAAAAAAAAAAAAAAAAAAAAGAATAAAGAAAGAAAGAGAAGAAATCGCCAAGAAGTGCTGTGCTGGTCGCATTTGGGCATATAGCTTGGCGTTGTAGACTGGAGAGGAGAAACGTTCAGCCACACGACATTGTGAGATTCCATTCCGGTCCTCGATTTCGCAATTCTAG

mRNA sequence

ATGAAAACGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCATAGAGGATGAAGAAGATGAGAGTATGAATGACTACAGCTTTGCCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAAAGCAGCACGAACAGAACAACTCCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCACTGGAGAGGAGAAACGTTCAGCCACACGACATTGTGAGATTCCATTCCGGTCCTCGATTTCGCAATTCTAG

Coding sequence (CDS)

ATGAAAACGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCATAGAGGATGAAGAAGATGAGAGTATGAATGACTACAGCTTTGCCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAAAGCAGCACGAACAGAACAACTCCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCACTGGAGAGGAGAAACGTTCAGCCACACGACATTGTGAGATTCCATTCCGGTCCTCGATTTCGCAATTCTAG
Homology
[Close]
BLAST of CmoCh04G030980 vs. TrEMBL
Match: A0A0A0LT04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406100 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 21 MKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRP 80
          M+SENED IEDEEDES+   SF++ LH P+LKL II R+L+QK  RKQ+E+ NSD H  P
Sbjct: 1  MESENEDSIEDEEDESVYSNSFSIGLHAPKLKLAIITRKLKQKARRKQYEEYNSDDHRCP 60

Query: 81 IRHRVRDITGE 92
          IRH  RD   +
Sbjct: 61 IRHSFRDTVNQ 71

[Close]
BLAST of CmoCh04G030980 vs. TrEMBL
Match: A0A0B2R840_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_040169 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 12 TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQ 71
          TGS+ VD+D   E+EDG+E EEDE +++  FAV LH  ELKL  +PR+ E++P  +QHEQ
Sbjct: 8  TGSAGVDMDFNGEDEDGVEREEDERVDENGFAVGLHATELKLLPVPRKGEKQPRLEQHEQ 67

Query: 72 NNSDHHWRPIRHRVRD 88
          N  D +  PI H + D
Sbjct: 68 NYPDQNRCPISHFLTD 83

[Close]
BLAST of CmoCh04G030980 vs. NCBI nr
Match: gi|700208042|gb|KGN63161.1| (hypothetical protein Csa_2G406100 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-12
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 21 MKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRP 80
          M+SENED IEDEEDES+   SF++ LH P+LKL II R+L+QK  RKQ+E+ NSD H  P
Sbjct: 1  MESENEDSIEDEEDESVYSNSFSIGLHAPKLKLAIITRKLKQKARRKQYEEYNSDDHRCP 60

Query: 81 IRHRVRDITGE 92
          IRH  RD   +
Sbjct: 61 IRHSFRDTVNQ 71

[Close]
BLAST of CmoCh04G030980 vs. NCBI nr
Match: gi|734393656|gb|KHN28289.1| (hypothetical protein glysoja_040169 [Glycine soja])

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 12 TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQ 71
          TGS+ VD+D   E+EDG+E EEDE +++  FAV LH  ELKL  +PR+ E++P  +QHEQ
Sbjct: 8  TGSAGVDMDFNGEDEDGVEREEDERVDENGFAVGLHATELKLLPVPRKGEKQPRLEQHEQ 67

Query: 72 NNSDHHWRPIRHRVRD 88
          N  D +  PI H + D
Sbjct: 68 NYPDQNRCPISHFLTD 83

The following BLAST results are available for this feature:
BLAST of CmoCh04G030980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G030980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT04_CUCSA2.4e-1259.15Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406100 PE=4 SV=1[more]
A0A0B2R840_GLYSO2.5e-0950.00Uncharacterized protein OS=Glycine soja GN=glysoja_040169 PE=4 SV=1[more]
BLAST of CmoCh04G030980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G030980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208042|gb|KGN63161.1|3.5e-1259.15hypothetical protein Csa_2G406100 [Cucumis sativus][more]
gi|734393656|gb|KHN28289.1|3.6e-0950.00hypothetical protein glysoja_040169 [Glycine soja][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G030980.1CmoCh04G030980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G030980CSPI02G25540Wild cucumber (PI 183967)cmocpiB695
CmoCh04G030980Cp4.1LG01g25960Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G030980MELO3C029837.2Melon (DHL92) v3.6.1cmomedB759
CmoCh04G030980CsaV3_2G034050Cucumber (Chinese Long) v3cmocucB0812
CmoCh04G030980Bhi04G001994Wax gourdcmowgoB0857
CmoCh04G030980CsGy2G025170Cucumber (Gy14) v2cgybcmoB236
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G030980Cucurbita moschata (Rifu)cmocmoB261
CmoCh04G030980Cucumber (Gy14) v1cgycmoB0166
CmoCh04G030980Cucurbita maxima (Rimu)cmacmoB308
CmoCh04G030980Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G030980Cucumber (Chinese Long) v2cmocuB684
CmoCh04G030980Melon (DHL92) v3.5.1cmomeB671
CmoCh04G030980Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G030980Bottle gourd (USVL1VR-Ls)cmolsiB645
CmoCh04G030980Silver-seed gourdcarcmoB0033
CmoCh04G030980Silver-seed gourdcarcmoB1360
CmoCh04G030980Watermelon (97103) v2cmowmbB705