CsaV3_2G034050 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G034050
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Protein of unknown function (DUF 3339)
Location	chr2 : 22555900 .. 22557045 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCAGACTGGGGTCCAGTTGTGGTGGCGGTGGCGTTGTTCATTCTCCTCTCCCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGCAATATGAACACCAGTGGAATTGCCATTTTGGTACATGCCATCATATTCTTCTGCATACTCACCATATTGATCATTGCAATTGGTATTCACATACACGTTTAGCAAGTTCATCATTTGCTTTGGCTATACCTTCAGCAAATGAATTGCTTGATCCTTTTTTTTTCTCTCCATTTTCACTAGGATTTTAGCATACTTCTGCCTATATTTTCCTTCATTTCTTGTTTTCTTCTTCCCTTTCAACAATAACTTACTATGTTGTAGTCTGCCTAAATGTAAACTATAATTTCCATTCTTTTTGGGGGTTAATAAGAAAGGTAAAGTTCTGTAAACAGTCATATCTCGAGCAAAGTTCTTCTCATTTTTCTTACCAATTGACAATAATATACTTATTATCGCTTGCTTTCACCATGAAACAAATCAGATTTATTCCAAAAAAATTAGCGAGATTATCCGCACTAAAACGAATTTCTTGTTCTTGAGATGCGTGAAATTTATGAAATCAAAGAATAGAGTGAAAGAAAAAGAAAGTTCTCGATAAGAAAAGAGTAGCTACAGAGTCCAATGTTAATTAGATCTACACTAACAATGGAGGAATAGGCGTATGTAAAAACGAAATTAACGTACAAAATGCCTTTTAATGCTTCCAAGTCTCCGACTACAGAAATAACAAATACAGACAGATCAAACAAGATCCTCTTCAAAAATAAATACAACACACAAGGCAGCAGACACATCAGCAGCTTCAGTTGGTAAGAATCTGGAAGGAAAAGAAAAGAGAAACAAGAAGAAGAGATTACCGGATCAGCCAGTGTAGATGTGGATATGGAGAGCGAGAATGAAGACAGCATAGAGGACGAAGAAGATGAGAGTGTGTATAGCAACAGCTTTTCCATTGGTCTTCATGCTCCCAAACTCAAACTGGCGATTATTACCCGGAAACTGAAACAGAAGGCCAGGAGAAAGCAGTACGAAGAGTACAACTCCGATGACCACCGGTGCCCAATCCGACATAGTTTCAGAGATACCGTAAATCAGTAA

mRNA sequence

ATGAGTGCAGACTGGGGTCCAGTTGTGGTGGCGGTGGCGTTGTTCATTCTCCTCTCCCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGCAATATGAACACCAGTGGAATTGCCATTTTGGTACATGCCATCATATTCTTCTGCATACTCACCATATTGATCATTGCAATTGCCAGTGTAGATGTGGATATGGAGAGCGAGAATGAAGACAGCATAGAGGACGAAGAAGATGAGAGTGTGTATAGCAACAGCTTTTCCATTGGTCTTCATGCTCCCAAACTCAAACTGGCGATTATTACCCGGAAACTGAAACAGAAGGCCAGGAGAAAGCAGTACGAAGAGTACAACTCCGATGACCACCGGTGCCCAATCCGACATAGTTTCAGAGATACCGTAAATCAGTAA

Coding sequence (CDS)

ATGAGTGCAGACTGGGGTCCAGTTGTGGTGGCGGTGGCGTTGTTCATTCTCCTCTCCCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGCAATATGAACACCAGTGGAATTGCCATTTTGGTACATGCCATCATATTCTTCTGCATACTCACCATATTGATCATTGCAATTGCCAGTGTAGATGTGGATATGGAGAGCGAGAATGAAGACAGCATAGAGGACGAAGAAGATGAGAGTGTGTATAGCAACAGCTTTTCCATTGGTCTTCATGCTCCCAAACTCAAACTGGCGATTATTACCCGGAAACTGAAACAGAAGGCCAGGAGAAAGCAGTACGAAGAGTACAACTCCGATGACCACCGGTGCCCAATCCGACATAGTTTCAGAGATACCGTAAATCAGTAA

Protein sequence

MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILIIAIASVDVDMESENEDSIEDEEDESVYSNSFSIGLHAPKLKLAIITRKLKQKARRKQYEEYNSDDHRCPIRHSFRDTVNQ

Homology

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BLAST of CsaV3_2G034050 vs. NCBI nr
Match: XP_008441321.1 (PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 PREDICTED: uncharacterized protein LOC105434681 [Cucumis sativus] >KGN63159.1 hypothetical protein Csa_2G406090 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 7.8e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsaV3_2G034050 vs. NCBI nr
Match: XP_022134305.1 (uncharacterized protein LOC111006600 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVV+AVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsaV3_2G034050 vs. NCBI nr
Match: XP_022961461.1 (uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 uncharacterized protein LOC111487624 [Cucurbita maxima] >XP_023522991.1 uncharacterized protein LOC111787076 [Cucurbita pepo subsp. pepo] >XP_023544168.1 uncharacterized protein LOC111803819 [Cucurbita pepo subsp. pepo] >XP_023544180.1 uncharacterized protein LOC111803828 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsaV3_2G034050 vs. NCBI nr
Match: XP_022939393.1 (uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 uncharacterized protein LOC111489052 [Cucurbita maxima] >XP_023550674.1 uncharacterized protein LOC111808749 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          M+ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsaV3_2G034050 vs. NCBI nr
Match: XP_015571582.1 (uncharacterized protein LOC8271434 [Ricinus communis])

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-19
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAVALFILLSPGLLFQLPAR RVVEFGNMNTSGIAIL+HA+I+FCI+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARTRVVEFGNMNTSGIAILIHAVIYFCIV 56

[Close]

BLAST of CsaV3_2G034050 vs. TAIR10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-22
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPV+VAVALFILLSPGLLFQLPAR RV+EFGNM+TSGI+ILVHAII+FCIL
Sbjct: 1  MSADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCIL 56

[Close]

BLAST of CsaV3_2G034050 vs. TAIR10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-21
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MS DWGPV+VAV+LFILLSPGLLFQLPAR RVVEFGNM TSGIAILVHA I+FCIL
Sbjct: 1  MSTDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCIL 56

[Close]

BLAST of CsaV3_2G034050 vs. TAIR10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          ADWGPV VAV LF++LSPGLLFQLPAR RV+E GNM TSGI+ILVHAI+FF I+
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAII 57

[Close]

BLAST of CsaV3_2G034050 vs. TAIR10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          ADWGPVVVAV LF+LL+PGLLFQ+PAR RVVEFGNM TSG +ILVH IIFF ++
Sbjct: 2  ADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLI 55

[Close]

BLAST of CsaV3_2G034050 vs. TAIR10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-16
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 3  ADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          ADWGPV++AV LF++LSPGLLFQ+PA  RVVEFGNM TSG +ILVHAIIFF ++
Sbjct: 2  ADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLI 55

[Close]

BLAST of CsaV3_2G034050 vs. TrEMBL
Match: tr|A0A1S3B3T8|A0A1S3B3T8_CUCME (uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.2e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsaV3_2G034050 vs. TrEMBL
Match: tr|A0A0A0LQ54|A0A0A0LQ54_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.2e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 56

[Close]

BLAST of CsaV3_2G034050 vs. TrEMBL
Match: tr|A0A151SQ49|A0A151SQ49_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_003118 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPV+VAVALFILLSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCIL
Sbjct: 6  MSADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCIL 61

[Close]

BLAST of CsaV3_2G034050 vs. TrEMBL
Match: tr|A0A2C9UGI6|A0A2C9UGI6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G162400 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCI 56
          MSADWGPVVVAV LFILLSPGLLFQLP+RIRVVEFGNMNTSGIAILVHA+I+FCI
Sbjct: 1  MSADWGPVVVAVVLFILLSPGLLFQLPSRIRVVEFGNMNTSGIAILVHAVIYFCI 55

[Close]

BLAST of CsaV3_2G034050 vs. TrEMBL
Match: tr|A0A2C9U6D8|A0A2C9U6D8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102300 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-19
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCIL 57
          MSADWGPVVVAV LFILLSPGLLFQLPAR RVVEFGNMNTSGIAIL+HA+I+FCI+
Sbjct: 1  MSADWGPVVVAVVLFILLSPGLLFQLPARTRVVEFGNMNTSGIAILIHAVIYFCII 56

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441321.1	7.8e-21	100.00	PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 P...	[more]
XP_022134305.1	1.0e-20	98.21	uncharacterized protein LOC111006600 [Momordica charantia]	[more]
XP_022961461.1	1.7e-20	98.21	uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 unchar...	[more]
XP_022939393.1	1.7e-20	98.21	uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 unchar...	[more]
XP_015571582.1	2.5e-19	91.07	uncharacterized protein LOC8271434 [Ricinus communis]	[more]

BLAST of CsaV3_2G034050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40980.1	3.0e-22	89.29	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	1.5e-21	87.50	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	2.2e-17	77.78	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.9e-17	77.78	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.9e-16	74.07	Protein of unknown function (DUF 3339)	[more]

BLAST of CsaV3_2G034050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G034050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B3T8\|A0A1S3B3T8_CUCME	5.2e-21	100.00	uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=...	[more]
tr\|A0A0A0LQ54\|A0A0A0LQ54_CUCSA	5.2e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1	[more]
tr\|A0A151SQ49\|A0A151SQ49_CAJCA	2.8e-19	92.86	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_003118 PE=4 S...	[more]
tr\|A0A2C9UGI6\|A0A2C9UGI6_MANES	2.8e-19	92.73	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G162400 PE=4 SV=...	[more]
tr\|A0A2C9U6D8\|A0A2C9U6D8_MANES	3.7e-19	89.29	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102300 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G034050.1	CsaV3_2G034050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 3..64 e-value: 9.5E-30 score: 102.5
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..64
None	No IPR available	PANTHER	PTHR33128:SF10	SUBFAMILY NOT NAMED	coord: 1..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G034050	CmoCh04G030980	Cucurbita moschata (Rifu)	cmocucB0812
CsaV3_2G034050	Cp4.1LG01g25960	Cucurbita pepo (Zucchini)	cpecucB0482
CsaV3_2G034050	Carg06053	Silver-seed gourd	carcucB0018
CsaV3_2G034050	Cla97C11G214580	Watermelon (97103) v2	cucwmbB118
CsaV3_2G034050	Bhi04G001993	Wax gourd	cucwgoB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G034050	Silver-seed gourd	carcucB1054
CsaV3_2G034050	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G034050	Cucumber (Gy14) v1	cgycucB092
CsaV3_2G034050	Cucurbita maxima (Rimu)	cmacucB0326
CsaV3_2G034050	Cucurbita maxima (Rimu)	cmacucB0827
CsaV3_2G034050	Cucurbita moschata (Rifu)	cmocucB0321
CsaV3_2G034050	Cucurbita pepo (Zucchini)	cpecucB0195
CsaV3_2G034050	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G034050	Bottle gourd (USVL1VR-Ls)	cuclsiB127
CsaV3_2G034050	Melon (DHL92) v3.5.1	cucmeB121
CsaV3_2G034050	Melon (DHL92) v3.6.1	cucmedB115
CsaV3_2G034050	Watermelon (Charleston Gray)	cucwcgB116
CsaV3_2G034050	Watermelon (97103) v1	cucwmB172