CmaCh04G029790 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G029790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_135
Location	Cma_Chr04 : 19535344 .. 19536038 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACAATGAATTCCACAAGCTTTAATCATCTTTATGGCAATCCTTCCAAAACCTTTGCTGTAAAGAAACAATTAAAACAACAAAGCATTTCTCAATACTCTAAGCATTATAACTCGCCTTTACACTTCGCCCACACATCCATTTTCTTTAAACAAAACACCCTCCACCTTCCTCACACATCTCTAAAGCAAGAAATAAAGTGCAGTTCAATAGAGATCCTTTTCTTTCCATCTTCATAAAGCAGATCCACTGCCTTCGACTCATCAACATAACTTTCCCTTGCTTATAAACCATTTTCTCTTCTTTCTCCCCAAGTTTGGCATCCCCTAAGCTCCTTCTTTGCTAAGCAAATCAACAAGCTCGTTCACCCTTATAACCCCTCTTTTCTTTTCACCTACTTCTAACCTTCAATTCTCTCTATAGAACTTGAAGAGGAACTCCACTACTTCAGAACACTCCTCCTCCTCTTGTAGATTGAGATGAGTGCAGACTGGGGACCGGTTGTCGTGGCGGTGGCGCTGTTCATTGTGCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

mRNA sequence

ATGATTGAGATGAGTGCAGACTGGGGACCGGTTGTCGTGGCGGTGGCGCTGTTCATTGTGCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

Coding sequence (CDS)

ATGATTGAGATGAGTGCAGACTGGGGACCGGTTGTCGTGGCGGTGGCGCTGTTCATTGTGCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

Protein sequence

MIEMSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAIGIHIHVN

Homology

[Close]

BLAST of CmaCh04G029790 vs. TrEMBL
Match: A0A0A0LQ54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406090 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-26
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 4  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 63
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 64 IAIGIHIHV 73
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of CmaCh04G029790 vs. TrEMBL
Match: A0A151SQ49_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_003118 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-25
Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = 1


Query: 3  EMSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL 62
          +MSADWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL
Sbjct: 5  KMSADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTIL 64

Query: 63 VIAIGIHIHVN 74
          ++AIGIHIH+N
Sbjct: 65 IVAIGIHIHIN 75

[Close]

BLAST of CmaCh04G029790 vs. TrEMBL
Match: A0A0B2R8Q9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_040168 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-24
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 4  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 63
          M ADWGPV++AVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTILV
Sbjct: 1  MGADWGPVIIAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILV 60

Query: 64 IAIGIHIHVN 74
          +AIGIHIH+N
Sbjct: 61 VAIGIHIHIN 70

[Close]

BLAST of CmaCh04G029790 vs. TrEMBL
Match: V7CWH9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G092200g PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-24
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 4  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 63
          M ADWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL+
Sbjct: 1  MGADWGPVIVAVALFILLSPGLLFQFPARFRVVEFGNMSTSGIAILVHAIIFFCILTILI 60

Query: 64 IAIGIHIHVN 74
          +AIGIH+H+N
Sbjct: 61 VAIGIHVHIN 70

[Close]

BLAST of CmaCh04G029790 vs. TrEMBL
Match: C6T029_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G054900 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-24
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 4  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 63
          M ADWGPV++AVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTILV
Sbjct: 1  MGADWGPVIIAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILV 60

Query: 64 IAIGIHIHVN 74
          +AIGIHIH+N
Sbjct: 61 VAIGIHIHIN 70

[Close]

BLAST of CmaCh04G029790 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 113.6 bits (283), Expect = 5.1e-26
Identity = 59/68 (86.76%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 4  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 63
          MSADWGPV+VAVALFI+LSPGLLFQLPAR RV+EFGNM+TSGI+ILVHAII+FCILTIL+
Sbjct: 1  MSADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILI 60

Query: 64 IAIGIHIH 72
          IAI IHIH
Sbjct: 61 IAIQIHIH 68

[Close]

BLAST of CmaCh04G029790 vs. TAIR10
Match: AT3G27027.1 (AT3G27027.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-25
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 4  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 63
          MS DWGPV+VAV+LFI+LSPGLLFQLPAR RVVEFGNM TSGIAILVHA I+FCILTILV
Sbjct: 1  MSTDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILV 60

Query: 64 IAIGIHIH 72
          IAI IHIH
Sbjct: 61 IAIQIHIH 68

[Close]

BLAST of CmaCh04G029790 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-22
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 6  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 65
          ADWGPV VAV LF+VLSPGLLFQLPAR RV+E GNM TSGI+ILVHAI+FF I+TILVIA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 66 IGIHIHV 73
          I IHIH+
Sbjct: 64 IQIHIHI 70

[Close]

BLAST of CmaCh04G029790 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 6  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 65
          ADWGPV++AV LF+VLSPGLLFQ+PA  RVVEFGNM TSG +ILVHAIIFF ++TI  IA
Sbjct: 2  ADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIA 61

Query: 66 IGIHIH 72
          I +HI+
Sbjct: 62 INVHIY 67

[Close]

BLAST of CmaCh04G029790 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 6  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 65
          ADWGPVVVAV LF++L+PGLLFQ+PAR RVVEFGNM TSG +ILVH IIFF ++TI  IA
Sbjct: 2  ADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIA 61

Query: 66 IGIHIH 72
          I +HI+
Sbjct: 62 IRLHIY 67

[Close]

BLAST of CmaCh04G029790 vs. NCBI nr
Match: gi|659081412|ref|XP_008441321.1| (PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-26
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 4  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 63
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 64 IAIGIHIHV 73
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of CmaCh04G029790 vs. NCBI nr
Match: gi|1000983056|ref|XP_015571582.1| (PREDICTED: uncharacterized protein LOC8271434 [Ricinus communis])

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-25
Identity = 62/70 (88.57%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 4  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 63
          MSADWGPVVVAVALFI+LSPGLLFQLPAR RVVEFGNMNTSGIAIL+HA+I+FCI+TIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARTRVVEFGNMNTSGIAILIHAVIYFCIVTILI 60

Query: 64 IAIGIHIHVN 74
          +AIGIHIHVN
Sbjct: 61 VAIGIHIHVN 70

[Close]

BLAST of CmaCh04G029790 vs. NCBI nr
Match: gi|1012345677|gb|KYP56869.1| (hypothetical protein KK1_003118, partial [Cajanus cajan])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-25
Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = 1


Query: 3  EMSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL 62
          +MSADWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL
Sbjct: 5  KMSADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTIL 64

Query: 63 VIAIGIHIHVN 74
          ++AIGIHIH+N
Sbjct: 65 IVAIGIHIHIN 75

[Close]

BLAST of CmaCh04G029790 vs. NCBI nr
Match: gi|802539274|ref|XP_012070210.1| (PREDICTED: uncharacterized protein LOC105632436 [Jatropha curcas])

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-24
Identity = 58/70 (82.86%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 4  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 63
          M ADWGPV++AVALFI+LSPGLLFQLPAR RV+EFGNMNTSGIAIL+HA+I+FCI+TIL+
Sbjct: 1  MGADWGPVIIAVALFILLSPGLLFQLPARTRVIEFGNMNTSGIAILIHAVIYFCIITILI 60

Query: 64 IAIGIHIHVN 74
          +AIGIHIHVN
Sbjct: 61 VAIGIHIHVN 70

[Close]

BLAST of CmaCh04G029790 vs. NCBI nr
Match: gi|965670185|dbj|BAT84792.1| (hypothetical protein VIGAN_04224600 [Vigna angularis var. angularis])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 4  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 63
          M ADWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAIL+HAIIFFCILTILV
Sbjct: 1  MGADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILIHAIIFFCILTILV 60

Query: 64 IAIGIHIHVN 74
          +AIGIHIH+N
Sbjct: 61 VAIGIHIHIN 70

The following BLAST results are available for this feature:

BLAST of CmaCh04G029790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G029790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ54_CUCSA	2.6e-26	97.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406090 PE=4 SV=1	[more]
A0A151SQ49_CAJCA	2.2e-25	87.32	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_003118 PE=4 SV=1	[more]
A0A0B2R8Q9_GLYSO	1.1e-24	87.14	Uncharacterized protein OS=Glycine soja GN=glysoja_040168 PE=4 SV=1	[more]
V7CWH9_PHAVU	1.1e-24	85.71	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G092200g PE=4 SV=1	[more]
C6T029_SOYBN	1.1e-24	87.14	Uncharacterized protein OS=Glycine max GN=GLYMA_16G054900 PE=2 SV=1	[more]

BLAST of CmaCh04G029790 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40980.1	5.1e-26	86.76	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	1.9e-25	86.76	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	3.4e-22	80.60	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.2e-19	72.73	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.1e-19	72.73	Protein of unknown function (DUF 3339)	[more]

BLAST of CmaCh04G029790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081412\|ref\|XP_008441321.1\|	3.7e-26	97.10	PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo]	[more]
gi\|1000983056\|ref\|XP_015571582.1\|	2.4e-25	88.57	PREDICTED: uncharacterized protein LOC8271434 [Ricinus communis]	[more]
gi\|1012345677\|gb\|KYP56869.1\|	3.1e-25	87.32	hypothetical protein KK1_003118, partial [Cajanus cajan]	[more]
gi\|802539274\|ref\|XP_012070210.1\|	1.2e-24	82.86	PREDICTED: uncharacterized protein LOC105632436 [Jatropha curcas]	[more]
gi\|965670185\|dbj\|BAT84792.1\|	1.5e-24	87.14	hypothetical protein VIGAN_04224600 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G029790.1	CmaCh04G029790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 6..71 score: 2.9
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 4..73 score: 1.9
None	No IPR available	PANTHER	PTHR33128:SF10	SUBFAMILY NOT NAMED	coord: 4..73 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G029790	Cucsa.087830	Cucumber (Gy14) v1	cgycmaB0171
CmaCh04G029790	Csa2G406080	Cucumber (Chinese Long) v2	cmacuB694
CmaCh04G029790	MELO3C008177	Melon (DHL92) v3.5.1	cmameB679
CmaCh04G029790	CSPI02G25520	Wild cucumber (PI 183967)	cmacpiB702
CmaCh04G029790	CmoCh04G031000	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G029790	CmoCh15G000720	Cucurbita moschata (Rifu)	cmacmoB692
CmaCh04G029790	Cp4.1LG01g26000	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G029790	Bhi04G001993	Wax gourd	cmawgoB0868

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G029790	CmaCh15G000730	Cucurbita maxima (Rimu)	cmacmaB324

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G029790	Watermelon (97103) v2	cmawmbB733
CmaCh04G029790	Wax gourd	cmawgoB0860
CmaCh04G029790	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G029790	Bottle gourd (USVL1VR-Ls)	cmalsiB656
CmaCh04G029790	Cucumber (Gy14) v2	cgybcmaB248
CmaCh04G029790	Melon (DHL92) v3.6.1	cmamedB762
CmaCh04G029790	Silver-seed gourd	carcmaB0033
CmaCh04G029790	Silver-seed gourd	carcmaB1403
CmaCh04G029790	Cucumber (Chinese Long) v3	cmacucB0827