Cp4.1LG01g26000 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g26000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein of unknown function (DUF 3339)
Location	Cp4.1LG01 : 20990412 .. 20991977 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCAATCAAAATGCTAGAGATTTTCTTAGGACTAGTTCTTATTTTCATAAAAAAAGAAAAAGAAAAAATGTGTTCGAGAATAATTTTAAAATGACTAAAATCGACATGGTCATTACCTGATTTAATCACACTTCTAAACTGGCTAAAACAAATGCTCATTTCTTTATTTAATTGGTACCCCTCTTTAGAAGAGAGGAGTGATGATGATTGCCTGTAGAGGTGAAGAAAATAATAGACCAATTCGTTAGTAATAAATCTAAAAGGCAAGCACAGATATTCTCTATATTTTACCCAATCAAAGTGTGTGAAGTCCAATCTGTCTGCTGAAATCATATTCATTCCTGCATCATGGTACAATGAATTCCACAAGCTTTAATCGTCTTTATGACAATCCTTCCAAAACCTTTGCTGTAAAGAAACAATTAAAACAACAAAGCATTCTCAATACTCTAAGCATTATAACCCGCCTTTACACTTCGCCCACACATCCATTTTCTTTAAACAAAACACCCTCCACCTTCCTCAACACATCTCTAAAGCAAGAAATAAAGTGCAGTTCAATACAGATCCTTTTCTTTCCATCTTCATAAAGCAGATCCACTGCCTTCGACTCATCAACATGACTTTCCCTTGCTTATAAACCATTTTCTCTTCTTTCTCCCCAAGTTTGGCATCCCCTAAGCTCCTTCTTTGCTAAGCAAATCAACAAGCTCGTTCACCCTTATAACCCCTCTTTTCTTTTCACCTACTTCTAACCTTCAATTCTCTCTAAAGAACTTGAAGAAGAACTCCACTACTTCAGAACACTCCTCCTCTTGTAGATTGAGATGAGTGCAGATTGGGGACCGGTCGTCGTGGCGGTGGCGCTGTTCATTGTCCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGGTATTCACATACACGTTAACTGACTTTCAATCATCTGCTTTGGCTACCTTCAGCAGATGAATTGCTTCCTTTTGTTTTCTCTTTCTCTAGGACTTAGCATATTTCTCTCTGTTCTGCTCCATTTTCCTGTTCTCTTTTTCCCTTTGAACAACACCTTTCTATATTGTAATCTGCTAAATGTAAACTATAATTTCAATTCTTTTTGGGGGGTTGATAAAGAAGGTAAGCTTCTGTAAATACTCTCACGGTAATTCCTTGAATATTTTGAGCAAAATTCTTCCCTATTTCCTAACTAATCGATAATATCCTTTACTAGCTTGCTTTTACCATGGAACAAACCAAATTTGAACAAAATTTTAGCCAGACTGTCCGCACTAGGACGAATATCTTGTACTTGAGATGCGTTGAATTTATTAAATCGAAGAACAAAGAGAGACAAAAAAGAAGATTCTCCATGAGATAGAGCAGCTACAGAGACCAGCGTTCGATGCAATTAGATCTATACTAGCAATGGAAACCAAAGGCGTAAGTAAAACGAAATAA

mRNA sequence

ATGGATTGGGGACCGGTCGTCGTGGCGGTGGCGCTGTTCATTGTCCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGAACAAAGAGAGACAAAAAAGAAGATTCTCCATGAGATAGAGCAGCTACAGAGACCAGCGTTCGATGCAATTAGATCTATACTAGCAATGGAAACCAAAGGCGTAAGTAAAACGAAATAA

Coding sequence (CDS)

ATGGATTGGGGACCGGTCGTCGTGGCGGTGGCGCTGTTCATTGTCCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGAACAAAGAGAGACAAAAAAGAAGATTCTCCATGAGATAGAGCAGCTACAGAGACCAGCGTTCGATGCAATTAGATCTATACTAGCAATGGAAACCAAAGGCGTAAGTAAAACGAAATAA

Protein sequence

MDWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAIEQRETKKKILHEIEQLQRPAFDAIRSILAMETKGVSKTK

Homology

[Close]

BLAST of Cp4.1LG01g26000 vs. TrEMBL
Match: A0A0A0LQ54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406090 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-22
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+IAI
Sbjct: 4  DWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILIIAI 63

[Close]

BLAST of Cp4.1LG01g26000 vs. TrEMBL
Match: V7CWH9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G092200g PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-20
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL++AI
Sbjct: 4  DWGPVIVAVALFILLSPGLLFQFPARFRVVEFGNMSTSGIAILVHAIIFFCILTILIVAI 63

[Close]

BLAST of Cp4.1LG01g26000 vs. TrEMBL
Match: V4MML8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005242mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-20
Identity = 53/61 (86.89%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV+VAV+LFI+LSPGLLFQLPAR RVVEFGNM TSGIAILVHA+I+FCILTILVIAI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAVIYFCILTILVIAI 63

Query: 62 E 63
          +
Sbjct: 64 Q 64

[Close]

BLAST of Cp4.1LG01g26000 vs. TrEMBL
Match: C6T029_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G054900 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-20
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV++AVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTILV+AI
Sbjct: 4  DWGPVIIAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILVVAI 63

[Close]

BLAST of Cp4.1LG01g26000 vs. TrEMBL
Match: A0A0B2R8Q9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_040168 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-20
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV++AVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTILV+AI
Sbjct: 4  DWGPVIIAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILVVAI 63

[Close]

BLAST of Cp4.1LG01g26000 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 104.8 bits (260), Expect = 3.2e-23
Identity = 52/61 (85.25%), Postives = 60/61 (98.36%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV+VAVALFI+LSPGLLFQLPAR RV+EFGNM+TSGI+ILVHAII+FCILTIL+IAI
Sbjct: 4  DWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIAI 63

Query: 62 E 63
          +
Sbjct: 64 Q 64

[Close]

BLAST of Cp4.1LG01g26000 vs. TAIR10
Match: AT3G27027.1 (AT3G27027.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 104.4 bits (259), Expect = 4.2e-23
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV+VAV+LFI+LSPGLLFQLPAR RVVEFGNM TSGIAILVHA I+FCILTILVIAI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63

Query: 62 E 63
          +
Sbjct: 64 Q 64

[Close]

BLAST of Cp4.1LG01g26000 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV VAV LF+VLSPGLLFQLPAR RV+E GNM TSGI+ILVHAI+FF I+TILVIAI
Sbjct: 5  DWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIAI 64

Query: 62 E 63
          +
Sbjct: 65 Q 65

[Close]

BLAST of Cp4.1LG01g26000 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-18
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPVVVAV LF++L+PGLLFQ+PAR RVVEFGNM TSG +ILVH IIFF ++TI  IAI
Sbjct: 3  DWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIAI 62

[Close]

BLAST of Cp4.1LG01g26000 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-18
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV++AV LF+VLSPGLLFQ+PA  RVVEFGNM TSG +ILVHAIIFF ++TI  IAI
Sbjct: 3  DWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIAI 62

[Close]

BLAST of Cp4.1LG01g26000 vs. NCBI nr
Match: gi|659081412|ref|XP_008441321.1| (PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 7.5e-22
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+IAI
Sbjct: 4  DWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILIIAI 63

[Close]

BLAST of Cp4.1LG01g26000 vs. NCBI nr
Match: gi|1000983056|ref|XP_015571582.1| (PREDICTED: uncharacterized protein LOC8271434 [Ricinus communis])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 52/60 (86.67%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPVVVAVALFI+LSPGLLFQLPAR RVVEFGNMNTSGIAIL+HA+I+FCI+TIL++AI
Sbjct: 4  DWGPVVVAVALFILLSPGLLFQLPARTRVVEFGNMNTSGIAILIHAVIYFCIVTILIVAI 63

[Close]

BLAST of Cp4.1LG01g26000 vs. NCBI nr
Match: gi|593797352|ref|XP_007161714.1| (hypothetical protein PHAVU_001G092200g [Phaseolus vulgaris])

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-20
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL++AI
Sbjct: 4  DWGPVIVAVALFILLSPGLLFQFPARFRVVEFGNMSTSGIAILVHAIIFFCILTILIVAI 63

[Close]

BLAST of Cp4.1LG01g26000 vs. NCBI nr
Match: gi|965670185|dbj|BAT84792.1| (hypothetical protein VIGAN_04224600 [Vigna angularis var. angularis])

HSP 1 Score: 105.5 bits (262), Expect = 5.4e-20
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAIL+HAIIFFCILTILV+AI
Sbjct: 4  DWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILIHAIIFFCILTILVVAI 63

[Close]

BLAST of Cp4.1LG01g26000 vs. NCBI nr
Match: gi|356561796|ref|XP_003549164.1| (PREDICTED: uncharacterized protein LOC100306597 [Glycine max])

HSP 1 Score: 105.5 bits (262), Expect = 5.4e-20
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 2  DWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAI 61
          DWGPV++AVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTILV+AI
Sbjct: 4  DWGPVIIAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILVVAI 63

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g26000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g26000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ54_CUCSA	5.2e-22	96.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406090 PE=4 SV=1	[more]
V7CWH9_PHAVU	2.9e-20	88.33	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G092200g PE=4 SV=1	[more]
V4MML8_EUTSA	3.7e-20	86.89	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005242mg PE=4 SV=1	[more]
C6T029_SOYBN	3.7e-20	88.33	Uncharacterized protein OS=Glycine max GN=GLYMA_16G054900 PE=2 SV=1	[more]
A0A0B2R8Q9_GLYSO	3.7e-20	88.33	Uncharacterized protein OS=Glycine soja GN=glysoja_040168 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g26000 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40980.1	3.2e-23	85.25	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	4.2e-23	86.89	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	2.6e-20	80.33	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.4e-18	75.00	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	3.1e-18	75.00	Protein of unknown function (DUF 3339)	[more]

BLAST of Cp4.1LG01g26000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081412\|ref\|XP_008441321.1\|	7.5e-22	96.67	PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo]	[more]
gi\|1000983056\|ref\|XP_015571582.1\|	3.2e-20	86.67	PREDICTED: uncharacterized protein LOC8271434 [Ricinus communis]	[more]
gi\|593797352\|ref\|XP_007161714.1\|	4.1e-20	88.33	hypothetical protein PHAVU_001G092200g [Phaseolus vulgaris]	[more]
gi\|965670185\|dbj\|BAT84792.1\|	5.4e-20	88.33	hypothetical protein VIGAN_04224600 [Vigna angularis var. angularis]	[more]
gi\|356561796\|ref\|XP_003549164.1\|	5.4e-20	88.33	PREDICTED: uncharacterized protein LOC100306597 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g26000.1	Cp4.1LG01g26000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 2..62 score: 3.8
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 2..62 score: 1.8
None	No IPR available	PANTHER	PTHR33128:SF10	SUBFAMILY NOT NAMED	coord: 2..62 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g26000	Cucsa.087830	Cucumber (Gy14) v1	cgycpeB0164
Cp4.1LG01g26000	CmaCh04G029790	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g26000	CmoCh04G031000	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g26000	Csa2G406080	Cucumber (Chinese Long) v2	cpecuB386
Cp4.1LG01g26000	MELO3C008177	Melon (DHL92) v3.5.1	cpemeB400
Cp4.1LG01g26000	CSPI02G25520	Wild cucumber (PI 183967)	cpecpiB385
Cp4.1LG01g26000	MELO3C008177.2	Melon (DHL92) v3.6.1	cpemedB465
Cp4.1LG01g26000	CsaV3_2G034040	Cucumber (Chinese Long) v3	cpecucB0482
Cp4.1LG01g26000	CsGy2G025150	Cucumber (Gy14) v2	cgybcpeB214
Cp4.1LG01g26000	Carg06054	Silver-seed gourd	carcpeB0034
Cp4.1LG01g26000	Carg24282	Silver-seed gourd	carcpeB1408

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g26000	Wax gourd	cpewgoB0525
Cp4.1LG01g26000	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g26000	Cucurbita maxima (Rimu)	cmacpeB317
Cp4.1LG01g26000	Cucurbita moschata (Rifu)	cmocpeB279
Cp4.1LG01g26000	Bottle gourd (USVL1VR-Ls)	cpelsiB339