Carg06054 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06054
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein of unknown function (DUF 3339)
Location	Cucurbita_argyrosperma_scaffold_026 : 831378 .. 831590 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCAGACTGGGGACCGGTTGTTGTGGCGGTGGCGCTGTTCATTGTCCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

mRNA sequence

ATGAGTGCAGACTGGGGACCGGTTGTTGTGGCGGTGGCGCTGTTCATTGTCCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

Coding sequence (CDS)

ATGAGTGCAGACTGGGGACCGGTTGTTGTGGCGGTGGCGCTGTTCATTGTCCTGTCGCCAGGGTTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAATACCAGTGGGATTGCCATTTTGGTGCACGCTATCATTTTCTTCTGCATACTCACCATATTGGTCATCGCTATCGGTATTCACATACACGTTAACTGA

Protein sequence

MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAIGIHIHVN

Homology

[Close]

BLAST of Carg06054 vs. NCBI nr
Match: XP_022961461.1 (uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 uncharacterized protein LOC111487624 [Cucurbita maxima] >XP_023522991.1 uncharacterized protein LOC111787076 [Cucurbita pepo subsp. pepo] >XP_023544168.1 uncharacterized protein LOC111803819 [Cucurbita pepo subsp. pepo] >XP_023544180.1 uncharacterized protein LOC111803828 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIHVN 71
          IAIGIHIHVN
Sbjct: 61 IAIGIHIHVN 70

[Close]

BLAST of Carg06054 vs. NCBI nr
Match: XP_008441321.1 (PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 PREDICTED: uncharacterized protein LOC105434681 [Cucumis sativus] >KGN63159.1 hypothetical protein Csa_2G406090 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 6.8e-26
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of Carg06054 vs. NCBI nr
Match: XP_022134305.1 (uncharacterized protein LOC111006600 [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVV+AVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIH 69
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of Carg06054 vs. NCBI nr
Match: XP_022939393.1 (uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 uncharacterized protein LOC111489052 [Cucurbita maxima] >XP_023550674.1 uncharacterized protein LOC111808749 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of Carg06054 vs. NCBI nr
Match: XP_015571582.1 (uncharacterized protein LOC8271434 [Ricinus communis])

HSP 1 Score: 123.2 bits (308), Expect = 3.4e-25
Identity = 62/70 (88.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFI+LSPGLLFQLPAR RVVEFGNMNTSGIAIL+HA+I+FCI+TIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARTRVVEFGNMNTSGIAILIHAVIYFCIVTILI 60

Query: 61 IAIGIHIHVN 71
          +AIGIHIHVN
Sbjct: 61 VAIGIHIHVN 70

[Close]

BLAST of Carg06054 vs. TAIR10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 114.0 bits (284), Expect = 3.7e-26
Identity = 59/68 (86.76%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPV+VAVALFI+LSPGLLFQLPAR RV+EFGNM+TSGI+ILVHAII+FCILTIL+
Sbjct: 1  MSADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILI 60

Query: 61 IAIGIHIH 69
          IAI IHIH
Sbjct: 61 IAIQIHIH 68

[Close]

BLAST of Carg06054 vs. TAIR10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-25
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MS DWGPV+VAV+LFI+LSPGLLFQLPAR RVVEFGNM TSGIAILVHA I+FCILTILV
Sbjct: 1  MSTDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILV 60

Query: 61 IAIGIHIH 69
          IAI IHIH
Sbjct: 61 IAIQIHIH 68

[Close]

BLAST of Carg06054 vs. TAIR10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-22
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 3  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPV VAV LF+VLSPGLLFQLPAR RV+E GNM TSGI+ILVHAI+FF I+TILVIA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 63 IGIHIHV 70
          I IHIH+
Sbjct: 64 IQIHIHI 70

[Close]

BLAST of Carg06054 vs. TAIR10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 3  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPV++AV LF+VLSPGLLFQ+PA  RVVEFGNM TSG +ILVHAIIFF ++TI  IA
Sbjct: 2  ADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIA 61

Query: 63 IGIHIH 69
          I +HI+
Sbjct: 62 INVHIY 67

[Close]

BLAST of Carg06054 vs. TAIR10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339))

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 3  ADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPVVVAV LF++L+PGLLFQ+PAR RVVEFGNM TSG +ILVH IIFF ++TI  IA
Sbjct: 2  ADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIA 61

Query: 63 IGIHIH 69
          I +HI+
Sbjct: 62 IRLHIY 67

[Close]

BLAST of Carg06054 vs. TrEMBL
Match: tr|A0A1S3B3T8|A0A1S3B3T8_CUCME (uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-26
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of Carg06054 vs. TrEMBL
Match: tr|A0A0A0LQ54|A0A0A0LQ54_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-26
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIHV 70
          IAIGIHIHV
Sbjct: 61 IAIGIHIHV 69

[Close]

BLAST of Carg06054 vs. TrEMBL
Match: tr|A0A2C9UGI6|A0A2C9UGI6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G162400 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.8e-25
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAV LFI+LSPGLLFQLP+RIRVVEFGNMNTSGIAILVHA+I+FCI TIL+
Sbjct: 1  MSADWGPVVVAVVLFILLSPGLLFQLPSRIRVVEFGNMNTSGIAILVHAVIYFCIYTILI 60

Query: 61 IAIGIHIHVN 71
          IAIGIHIHVN
Sbjct: 61 IAIGIHIHVN 70

[Close]

BLAST of Carg06054 vs. TrEMBL
Match: tr|A0A2C9U6D8|A0A2C9U6D8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102300 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.8e-25
Identity = 62/70 (88.57%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVVAV LFI+LSPGLLFQLPAR RVVEFGNMNTSGIAIL+HA+I+FCI+TIL+
Sbjct: 1  MSADWGPVVVAVVLFILLSPGLLFQLPARTRVVEFGNMNTSGIAILIHAVIYFCIITILI 60

Query: 61 IAIGIHIHVN 71
          IAIGIHIHVN
Sbjct: 61 IAIGIHIHVN 70

[Close]

BLAST of Carg06054 vs. TrEMBL
Match: tr|A0A151SQ49|A0A151SQ49_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_003118 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.0e-25
Identity = 62/70 (88.57%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPV+VAVALFI+LSPGLLFQ PAR RVVEFGNM+TSGIAILVHAIIFFCILTIL+
Sbjct: 6  MSADWGPVIVAVALFILLSPGLLFQFPARYRVVEFGNMSTSGIAILVHAIIFFCILTILI 65

Query: 61 IAIGIHIHVN 71
          +AIGIHIH+N
Sbjct: 66 VAIGIHIHIN 75

The following BLAST results are available for this feature:

BLAST of Carg06054 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961461.1	2.8e-27	100.00	uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 unchar...	[more]
XP_008441321.1	6.8e-26	97.10	PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 P...	[more]
XP_022134305.1	1.2e-25	97.06	uncharacterized protein LOC111006600 [Momordica charantia]	[more]
XP_022939393.1	1.2e-25	97.10	uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 unchar...	[more]
XP_015571582.1	3.4e-25	88.57	uncharacterized protein LOC8271434 [Ricinus communis]	[more]

BLAST of Carg06054 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40980.1	3.7e-26	86.76	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	1.4e-25	86.76	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	2.5e-22	80.60	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.2e-19	72.73	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.0e-19	72.73	Protein of unknown function (DUF 3339)	[more]

BLAST of Carg06054 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06054 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B3T8\|A0A1S3B3T8_CUCME	4.5e-26	97.10	uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=...	[more]
tr\|A0A0A0LQ54\|A0A0A0LQ54_CUCSA	4.5e-26	97.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1	[more]
tr\|A0A2C9UGI6\|A0A2C9UGI6_MANES	3.8e-25	90.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G162400 PE=4 SV=...	[more]
tr\|A0A2C9U6D8\|A0A2C9U6D8_MANES	3.8e-25	88.57	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102300 PE=4 SV=...	[more]
tr\|A0A151SQ49\|A0A151SQ49_CAJCA	5.0e-25	88.57	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_003118 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06054-RA	Carg06054-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 3..68 e-value: 2.5E-32 score: 110.8
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..70
None	No IPR available	PANTHER	PTHR33128:SF10	SUBFAMILY NOT NAMED	coord: 1..70

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06054	Cla003372	Watermelon (97103) v1	carwmB0027
Carg06054	Csa2G406080	Cucumber (Chinese Long) v2	carcuB0018
Carg06054	MELO3C008177	Melon (DHL92) v3.5.1	carmeB0023
Carg06054	CSPI02G25520	Wild cucumber (PI 183967)	carcpiB0018
Carg06054	CmoCh04G031000	Cucurbita moschata (Rifu)	carcmoB0033
Carg06054	Cp4.1LG01g26000	Cucurbita pepo (Zucchini)	carcpeB0034
Carg06054	CsGy2G025150	Cucumber (Gy14) v2	carcgybB0017
Carg06054	MELO3C008177.2	Melon (DHL92) v3.6.1	carmedB0024
Carg06054	CsaV3_2G034040	Cucumber (Chinese Long) v3	carcucB0018

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06054	Silver-seed gourd	carcarB027
Carg06054	Cucumber (Gy14) v1	carcgyB0016
Carg06054	Cucurbita maxima (Rimu)	carcmaB0030
Carg06054	Cucurbita maxima (Rimu)	carcmaB0033
Carg06054	Cucurbita moschata (Rifu)	carcmoB0031
Carg06054	Cucurbita pepo (Zucchini)	carcpeB0031
Carg06054	Bottle gourd (USVL1VR-Ls)	carlsiB017
Carg06054	Wax gourd	carwgoB0022