Cla003372 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003372
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Os02g0508100 protein (Fragment) (AHRD V1 ***- Q0E0Z9_ORYSJ)
Location	Chr11 : 7679769 .. 7679978 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATTGGGGGCCTGTTCTAATAGCTGTAATACTGTTCGTAGTTCTGAGCCCCGGAGTTCTGTTTCAGCTGCCCGGCAAAAACAGAGTTGTGGAGTTCGTCAATCTGCAAACCAGCGCCATCTCCGTTTTCGTCCACGCCATCATCTACTTTGGCCTCATTACTATCTTTGTCATCGCCATTGGGGTTCACATTTCCAGTGGCTAA

mRNA sequence

ATGGGGGATTGGGGGCCTGTTCTAATAGCTGTAATACTGTTCGTAGTTCTGAGCCCCGGAGTTCTGTTTCAGCTGCCCGGCAAAAACAGAGTTGTGGAGTTCGTCAATCTGCAAACCAGCGCCATCTCCGTTTTCGTCCACGCCATCATCTACTTTGGCCTCATTACTATCTTTGTCATCGCCATTGGGGTTCACATTTCCAGTGGCTAA

Coding sequence (CDS)

ATGGGGGATTGGGGGCCTGTTCTAATAGCTGTAATACTGTTCGTAGTTCTGAGCCCCGGAGTTCTGTTTCAGCTGCCCGGCAAAAACAGAGTTGTGGAGTTCGTCAATCTGCAAACCAGCGCCATCTCCGTTTTCGTCCACGCCATCATCTACTTTGGCCTCATTACTATCTTTGTCATCGCCATTGGGGTTCACATTTCCAGTGGCTAA

Protein sequence

MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVIAIGVHISSG

Homology

[Close]

BLAST of Cla003372 vs. TrEMBL
Match: A0A0A0LMX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406080 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-25
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVI 60
          MGDW PVLIAVILFVVLSPGVLFQLPG +RVV+F+N+QTSAISVFVH+I +FGLITIFVI
Sbjct: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AI VHISSG
Sbjct: 61 AIDVHISSG 69

[Close]

BLAST of Cla003372 vs. TrEMBL
Match: B9RBG4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676560 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-24
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVI 60
          M DWGPV+IAV+LFVVLSPGVLFQLPG +RVVEF NLQTS +SVFVH II+FGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Cla003372 vs. TrEMBL
Match: B9GZN7_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s16890g PE=4 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 4.3e-23
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1   MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVI 60
           M DWGPV+IAV+LFV+LSPG+LFQLPG+NRVVEF N+QTSA+S+ VH II+FGLITIF+I
Sbjct: 37  MSDWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMQTSALSILVHTIIFFGLITIFLI 96

Query: 61  AIGVHISSG 70
           AIGVHI +G
Sbjct: 97  AIGVHIYTG 105

[Close]

BLAST of Cla003372 vs. TrEMBL
Match: A0A0D2RCU8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G165200 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.6e-23
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVI 60
          M DWGPV+IAV+LFV+LSPG+LFQLPG+N+VVEF N+QTS IS+ VHAII+FGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRNKVVEFGNMQTSGISILVHAIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI +G
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Cla003372 vs. TrEMBL
Match: W1PP84_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00013p00100030 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.3e-23
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVI 60
          M DWGPV+IAV+LFV+LSPG+LFQLPGK+RVVEF N QTS IS+ VH IIYFGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGKSRVVEFGNFQTSGISILVHTIIYFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI +G
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Cla003372 vs. NCBI nr
Match: gi|659081410|ref|XP_008441320.1| (PREDICTED: uncharacterized protein LOC103485470 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 5.3e-27
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVI 60
          MGDWGPVLIAVILFVVLSPGVLFQLPG +RVV+FVN+QTSAISVFVH+II+FGLITIFVI
Sbjct: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AIGVHISSG
Sbjct: 61 AIGVHISSG 69

[Close]

BLAST of Cla003372 vs. NCBI nr
Match: gi|778673217|ref|XP_011649952.1| (PREDICTED: uncharacterized protein LOC101212375 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 6.5e-25
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVI 60
          MGDW PVLIAVILFVVLSPGVLFQLPG +RVV+F+N+QTSAISVFVH+I +FGLITIFVI
Sbjct: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AI VHISSG
Sbjct: 61 AIDVHISSG 69

[Close]

BLAST of Cla003372 vs. NCBI nr
Match: gi|802539272|ref|XP_012070204.1| (PREDICTED: uncharacterized protein LOC105632430 [Jatropha curcas])

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-24
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVI 60
          M DWGPV+IAV+LFVVLSPGVLFQLPGK+RVVEFVN+QTS +SV VH II+FGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGKSRVVEFVNMQTSGVSVLVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Cla003372 vs. NCBI nr
Match: gi|255536863|ref|XP_002509498.1| (PREDICTED: uncharacterized protein LOC8271433 [Ricinus communis])

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-24
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVI 60
          M DWGPV+IAV+LFVVLSPGVLFQLPG +RVVEF NLQTS +SVFVH II+FGLITIF+I
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Cla003372 vs. NCBI nr
Match: gi|566163091|ref|XP_002304675.2| (hypothetical protein POPTR_0003s16890g, partial [Populus trichocarpa])

HSP 1 Score: 114.8 bits (286), Expect = 6.1e-23
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1   MGDWGPVLIAVILFVVLSPGVLFQLPGKNRVVEFVNLQTSAISVFVHAIIYFGLITIFVI 60
           M DWGPV+IAV+LFV+LSPG+LFQLPG+NRVVEF N+QTSA+S+ VH II+FGLITIF+I
Sbjct: 37  MSDWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMQTSALSILVHTIIFFGLITIFLI 96

Query: 61  AIGVHISSG 70
           AIGVHI +G
Sbjct: 97  AIGVHIYTG 105

The following BLAST results are available for this feature:

BLAST of Cla003372 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMX4_CUCSA	4.6e-25	85.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406080 PE=4 SV=1	[more]
B9RBG4_RICCO	2.3e-24	81.16	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676560 PE=4 SV=1	[more]
B9GZN7_POPTR	4.3e-23	76.81	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s16890g P...	[more]
A0A0D2RCU8_GOSRA	5.6e-23	76.81	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G165200 PE=4 SV=1	[more]
W1PP84_AMBTC	7.3e-23	78.26	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00013p00100030 PE=4 SV=...	[more]

BLAST of Cla003372 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081410\|ref\|XP_008441320.1\|	5.3e-27	91.30	PREDICTED: uncharacterized protein LOC103485470 [Cucumis melo]	[more]
gi\|778673217\|ref\|XP_011649952.1\|	6.5e-25	85.51	PREDICTED: uncharacterized protein LOC101212375 [Cucumis sativus]	[more]
gi\|802539272\|ref\|XP_012070204.1\|	2.5e-24	81.16	PREDICTED: uncharacterized protein LOC105632430 [Jatropha curcas]	[more]
gi\|255536863\|ref\|XP_002509498.1\|	3.2e-24	81.16	PREDICTED: uncharacterized protein LOC8271433 [Ricinus communis]	[more]
gi\|566163091\|ref\|XP_002304675.2\|	6.1e-23	76.81	hypothetical protein POPTR_0003s16890g, partial [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003372	Cla003372.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..66 score: 1.0
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 1.3
None	No IPR available	PANTHER	PTHR33128:SF9	SUBFAMILY NOT NAMED	coord: 1..69 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003372	Cla97C11G214560	Watermelon (97103) v2	wmwmbB365
Cla003372	Csa2G406080	Cucumber (Chinese Long) v2	cuwmB160
Cla003372	MELO3C008177	Melon (DHL92) v3.5.1	mewmB330
Cla003372	ClCG11G009450	Watermelon (Charleston Gray)	wcgwmB105
Cla003372	CSPI02G25520	Wild cucumber (PI 183967)	cpiwmB163
Cla003372	Cucsa.087800	Cucumber (Gy14) v1	cgywmB104
Cla003372	Lsi03G004030	Bottle gourd (USVL1VR-Ls)	lsiwmB279
Cla003372	CsGy2G025150	Cucumber (Gy14) v2	cgybwmB153
Cla003372	MELO3C008177.2	Melon (DHL92) v3.6.1	medwmB327
Cla003372	Carg06054	Silver-seed gourd	carwmB0027
Cla003372	Carg24282	Silver-seed gourd	carwmB1011
Cla003372	CsaV3_2G034040	Cucumber (Chinese Long) v3	cucwmB172
Cla003372	Bhi04G001993	Wax gourd	wgowmB349

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003372	Cucurbita maxima (Rimu)	cmawmB286
Cla003372	Cucurbita moschata (Rifu)	cmowmB277
Cla003372	Cucurbita pepo (Zucchini)	cpewmB198