Cucsa.087800 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.087800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protein of unknown function (DUF 3339)
Location	scaffold00888 : 334016 .. 334397 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTTTGTTGTTGAGAGGGAGAGGTACTATCGAGAAAGATCAATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTTCTGCTAACTCCGGGCTTGTTGGTTCAGATGCCTGGGAAGAGTCGGTTCGTTGAATTTGGGAATTTTCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTATATGGGCTCCTAATTTCACATCTTTCTCTCTCTCTTTTTTTTCTTtCTTTCCCTTAAATCTGATTGTCTTTTGTCTTTAAACTTGTTTTGTATCCATTTTTTTtCTCAATCTCCTTTGATTTGTTAATAAGTATATGTGG

mRNA sequence

TGGTTTGTTGTTGAGAGGGAGAGGTACTATCGAGAAAGATCAATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTTCTGCTAACTCCGGGCTTGTTGGTTCAGATGCCTGGGAAGAGTCGGTTCGTTGAATTTGGGAATTTTCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTATATGGGCTCCTAATTTCACATCTTTCTCTCTCTCTTTTTTTTCTTTCTTTCCCTTAAATCTGATTGTCTTTTGTCTTTAAACTTGTTTTGTATCCATTTTTTTTCTCAATCTCCTTTGATTTGTTAATAAGTATATGTGG

Coding sequence (CDS)

ATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTTCTGCTAACTCCGGGCTTGTTGGTTCAGATGCCTGGGAAGAGTCGGTTCGTTGAATTTGGGAATTTTCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTATATGGGCTCCTAA

Protein sequence

MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLLAVRVHVYMGS*

Homology

[Close]

BLAST of Cucsa.087800 vs. TrEMBL
Match: A0A061EEJ7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017235 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-27
Identity = 59/70 (84.29%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PGKSRF+EFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

[Close]

BLAST of Cucsa.087800 vs. TrEMBL
Match: W9SAM3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010783 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.5e-27
Identity = 57/70 (81.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PGKSR +E+GNFQTSGVSILVHS+LYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGKSRMIEYGNFQTSGVSILVHSVLYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYLGS 70

[Close]

BLAST of Cucsa.087800 vs. TrEMBL
Match: A0A059APQ4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01640 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.5e-27
Identity = 58/70 (82.86%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVA++LFVLLTPGLL+Q+PGK RF+EFGNFQTSG S+LVHSILYFAL+CIFLL
Sbjct: 1  MSDWGPVFVAMVLFVLLTPGLLIQIPGKHRFIEFGNFQTSGASVLVHSILYFALVCIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VHVY+GS
Sbjct: 61 AVGVHVYIGS 70

[Close]

BLAST of Cucsa.087800 vs. TrEMBL
Match: M5XAW7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026813mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.5e-27
Identity = 57/67 (85.07%), Postives = 66/67 (98.51%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVF+AV+LF+LLTPGLL+QMPGKSRFVEFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFIAVVLFILLTPGLLIQMPGKSRFVEFGNFQTSGISILVHSIIYFALICIFLL 60

Query: 61 AVRVHVY 68
          A+ VH+Y
Sbjct: 61 AIGVHMY 67

[Close]

BLAST of Cucsa.087800 vs. TrEMBL
Match: M5XAW7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026813mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-16
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1   MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
           MADWGP+ + V+LF+LL PGLL  +PG SR VEFG+ +T+G +I VH++++FAL  I +L
Sbjct: 71  MADWGPILIGVVLFILLQPGLLFSLPGNSRQVEFGSMKTNGKAIAVHTLIFFALYAILIL 130

Query: 61  AVRVHVYMG 70
           AV VH+Y G
Sbjct: 131 AVHVHIYTG 139

HSP 2 Score: 127.1 bits (318), Expect = 8.5e-27
Identity = 58/69 (84.06%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PG+ RF+EFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQIPGRHRFIEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMG 70
          AV VH+Y+G
Sbjct: 61 AVGVHMYLG 69

[Close]

BLAST of Cucsa.087800 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-26
Identity = 46/69 (66.67%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPV V V+LFV+LTPGLL Q+PG+ ++VEFGNFQTS VS++VHS+LYF+L+C+FLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AVRVHVYMG 70
          A+++H+Y+G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of Cucsa.087800 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 107.1 bits (266), Expect = 4.6e-24
Identity = 45/66 (68.18%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M DWGPVFVAV LFVLLTPGLL+Q+PG+ R VEFG FQTSG+S++VH+++YF L+CI LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AVRVHV 67
          A+++H+
Sbjct: 61 ALQIHI 66

HSP 2 Score: 84.7 bits (208), Expect = 2.5e-17
Identity = 35/69 (50.72%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 1   MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
           MADW PV V V+LFV+L+PGLL  +PG +R V+FG  +T+G +I VH++++FA+  I +L
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133

Query: 61  AVRVHVYMG 70
           A+ +H+Y G
Sbjct: 134 ALNLHIYTG 142

[Close]

BLAST of Cucsa.087800 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-23
Identity = 48/70 (68.57%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPV VAV+LFVLLTPGLL Q+P + R VEFGN QTSG SILVH+I++F LI IF +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AVRVHVYMGS 71
          A+R+H+Y G+
Sbjct: 61 AIRLHIYTGT 70

[Close]

BLAST of Cucsa.087800 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-22
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPV +AV+LFV+L+PGLL Q+P   R VEFGN QTSG SILVH+I++F LI IF +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AVRVHVYMG 70
          A+ VH+Y G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Cucsa.087800 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-20
Identity = 38/66 (57.58%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 2  ADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLLA 61
          ADWGPV VAV LF+LL+PGLL Q+P ++R +EFGN  TSG+SILVH+I+YF ++ I ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 VRVHVY 68
          +++H++
Sbjct: 63 IQIHIH 68

[Close]

BLAST of Cucsa.087800 vs. NCBI nr
Match: gi|659081418|ref|XP_008441325.1| (PREDICTED: uncharacterized protein LOC103485474 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 3.7e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AVRVHVYMGS
Sbjct: 61 AVRVHVYMGS 70

[Close]

BLAST of Cucsa.087800 vs. NCBI nr
Match: gi|658012060|ref|XP_008341292.1| (PREDICTED: uncharacterized protein LOC103404182 [Malus domestica])

HSP 1 Score: 131.7 bits (330), Expect = 5.0e-28
Identity = 60/70 (85.71%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVF+AV+LF+LLTPGLL+QMPGKSRFVEFGNFQTSGVSILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFIAVVLFILLTPGLLIQMPGKSRFVEFGNFQTSGVSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]

BLAST of Cucsa.087800 vs. NCBI nr
Match: gi|645250211|ref|XP_008231104.1| (PREDICTED: uncharacterized protein LOC103330325 [Prunus mume])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 59/70 (84.29%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+QMPGK RFVEFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQMPGKGRFVEFGNFQTSGISILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]

BLAST of Cucsa.087800 vs. NCBI nr
Match: gi|657974552|ref|XP_008379108.1| (PREDICTED: uncharacterized protein LOC103442131 [Malus domestica])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVF+AV+LFVLLTPGLL+QMPGKSRFV FGNFQTSGVSILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFIAVLLFVLLTPGLLIQMPGKSRFVXFGNFQTSGVSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]

BLAST of Cucsa.087800 vs. NCBI nr
Match: gi|590647455|ref|XP_007031906.1| (Uncharacterized protein TCM_017235 [Theobroma cacao])

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-27
Identity = 59/70 (84.29%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVFVAV+LF+LLTPGLL+Q+PGKSRF+EFGNFQTSG+SILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VH+Y+GS
Sbjct: 61 AVGVHMYVGS 70

The following BLAST results are available for this feature:

BLAST of Cucsa.087800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EEJ7_THECC	1.7e-27	84.29	Uncharacterized protein OS=Theobroma cacao GN=TCM_017235 PE=4 SV=1	[more]
W9SAM3_9ROSA	6.5e-27	81.43	Uncharacterized protein OS=Morus notabilis GN=L484_010783 PE=4 SV=1	[more]
A0A059APQ4_EUCGR	6.5e-27	82.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01640 PE=4 SV=1	[more]
M5XAW7_PRUPE	8.5e-27	85.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026813mg PE=4 SV=1	[more]
M5XAW7_PRUPE	4.0e-16	56.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026813mg PE=4 SV=1	[more]

BLAST of Cucsa.087800 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08391.1	2.9e-26	66.67	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	4.6e-24	68.18	unknown protein	[more]
AT3G48660.1	1.0e-23	68.57	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	4.3e-22	65.22	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	3.1e-20	57.58	Protein of unknown function (DUF 3339)	[more]

BLAST of Cucsa.087800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081418\|ref\|XP_008441325.1\|	3.7e-31	100.00	PREDICTED: uncharacterized protein LOC103485474 [Cucumis melo]	[more]
gi\|658012060\|ref\|XP_008341292.1\|	5.0e-28	85.71	PREDICTED: uncharacterized protein LOC103404182 [Malus domestica]	[more]
gi\|645250211\|ref\|XP_008231104.1\|	1.4e-27	84.29	PREDICTED: uncharacterized protein LOC103330325 [Prunus mume]	[more]
gi\|657974552\|ref\|XP_008379108.1\|	1.4e-27	85.71	PREDICTED: uncharacterized protein LOC103442131 [Malus domestica]	[more]
gi\|590647455\|ref\|XP_007031906.1\|	2.5e-27	84.29	Uncharacterized protein TCM_017235 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.087800.1	Cucsa.087800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 score: 1.5
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 1.0
None	No IPR available	PANTHER	PTHR33128:SF14	SUBFAMILY NOT NAMED	coord: 1..69 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.087800	Cla003372	Watermelon (97103) v1	cgywmB104
Cucsa.087800	Csa2G406080	Cucumber (Chinese Long) v2	cgycuB090
Cucsa.087800	MELO3C008177	Melon (DHL92) v3.5.1	cgymeB100
Cucsa.087800	CSPI02G25520	Wild cucumber (PI 183967)	cgycpiB093
Cucsa.087800	CmoCh15G000740	Cucurbita moschata (Rifu)	cgycmoB0163
Cucsa.087800	Lsi03G004030	Bottle gourd (USVL1VR-Ls)	cgylsiB098
Cucsa.087800	Cp4.1LG13g11200	Cucurbita pepo (Zucchini)	cgycpeB0162
Cucsa.087800	MELO3C008177.2	Melon (DHL92) v3.6.1	cgymedB099
Cucsa.087800	CsaV3_2G034040	Cucumber (Chinese Long) v3	cgycucB092
Cucsa.087800	Cla97C11G214560	Watermelon (97103) v2	cgywmbB096
Cucsa.087800	Bhi04G001993	Wax gourd	cgywgoB111
Cucsa.087800	Carg24282	Silver-seed gourd	carcgyB1127

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.087800	Cucurbita maxima (Rimu)	cgycmaB0168
Cucsa.087800	Cucurbita maxima (Rimu)	cgycmaB0171
Cucsa.087800	Cucurbita moschata (Rifu)	cgycmoB0166
Cucsa.087800	Watermelon (Charleston Gray)	cgywcgB100
Cucsa.087800	Cucurbita pepo (Zucchini)	cgycpeB0164
Cucsa.087800	Silver-seed gourd	carcgyB0016