Lsi07G007880 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G007880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	VQ motif-containing family protein
Location	chr07 : 8664685 .. 8665323 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTTCTTCCACGGCGGCGCCACCACCACCTTCCGATCAATCCAACCCCGAAATGATTTTCGTCGATCGAGTTTCTGACACCACCGCCTCCGGAAACACAGGCGGTTCGACTGGATTGAATCCGGAAGGTCGCGTAGGAAAGCCGGTTCGCCGCCGGTCCAGGGCATCTCGGCGGACTCCGACGACGTTGCTCAACACGGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACTGGCGGTCCAACTCCACCTTTCGCCTCATCGATTTCCCCCAATTTTTCTCTAGGGTTCGGCGGGATTCGTCAATCGAATTTCTCCACTCCGCCGAACGCCGTGATTTCTCCGCCCTCTGGTTACCTATTACAACAACCGCCACAGTTCTACAATCACAATCCCCAGCAGTTCGTGTTTCCGACAGCCGCACACGGCGGCGACTTTCTTCAGAGGCTATCAGCGCCGAGGCCGGCTAATGGCGGAGTTTCTGGAGACGGATTTCTGATGGAAAGTGTGGTTTCTTCTCAAATTCCTCCCGCCGGAGCTTCTGCAGATTCCTCCAACGAGAGCAATGGCGGTAATGGCCGCTTACTGTTCTGA

mRNA sequence

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTTCTTCCACGGCGGCGCCACCACCACCTTCCGATCAATCCAACCCCGAAATGATTTTCGTCGATCGAGTTTCTGACACCACCGCCTCCGGAAACACAGGCGGTTCGACTGGATTGAATCCGGAAGGTCGCGTAGGAAAGCCGGTTCGCCGCCGGTCCAGGGCATCTCGGCGGACTCCGACGACGTTGCTCAACACGGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACTGGCGGTCCAACTCCACCTTTCGCCTCATCGATTTCCCCCAATTTTTCTCTAGGGTTCGGCGGGATTCGTCAATCGAATTTCTCCACTCCGCCGAACGCCGTGATTTCTCCGCCCTCTGGTTACCTATTACAACAACCGCCACAGTTCTACAATCACAATCCCCAGCAGTTCGTGTTTCCGACAGCCGCACACGGCGGCGACTTTCTTCAGAGGCTATCAGCGCCGAGGCCGGCTAATGGCGGAGTTTCTGGAGACGGATTTCTGATGGAAAGTGTGGTTTCTTCTCAAATTCCTCCCGCCGGAGCTTCTGCAGATTCCTCCAACGAGAGCAATGGCGGTAATGGCCGCTTACTGTTCTGA

Coding sequence (CDS)

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTTCTTCCACGGCGGCGCCACCACCACCTTCCGATCAATCCAACCCCGAAATGATTTTCGTCGATCGAGTTTCTGACACCACCGCCTCCGGAAACACAGGCGGTTCGACTGGATTGAATCCGGAAGGTCGCGTAGGAAAGCCGGTTCGCCGCCGGTCCAGGGCATCTCGGCGGACTCCGACGACGTTGCTCAACACGGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACTGGCGGTCCAACTCCACCTTTCGCCTCATCGATTTCCCCCAATTTTTCTCTAGGGTTCGGCGGGATTCGTCAATCGAATTTCTCCACTCCGCCGAACGCCGTGATTTCTCCGCCCTCTGGTTACCTATTACAACAACCGCCACAGTTCTACAATCACAATCCCCAGCAGTTCGTGTTTCCGACAGCCGCACACGGCGGCGACTTTCTTCAGAGGCTATCAGCGCCGAGGCCGGCTAATGGCGGAGTTTCTGGAGACGGATTTCTGATGGAAAGTGTGGTTTCTTCTCAAATTCCTCCCGCCGGAGCTTCTGCAGATTCCTCCAACGAGAGCAATGGCGGTAATGGCCGCTTACTGTTCTGA

Protein sequence

MSGPGDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSDTTASGNTGGSTGLNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGGIRQSNFSTPPNAVISPPSGYLLQQPPQFYNHNPQQFVFPTAAHGGDFLQRLSAPRPANGGVSGDGFLMESVVSSQIPPAGASADSSNESNGGNGRLLF

Homology

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BLAST of Lsi07G007880 vs. Swiss-Prot
Match: VQ22_ARATH (VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-16
Identity = 79/212 (37.26%), Postives = 101/212 (47.64%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSDTTASGNTGGSTGLNPE-GRV 60
           M+ P +W QFY+ N +        S            V+ TTA   T   + L+PE GRV
Sbjct: 1   MANPNEWSQFYNNNQTFFTTSTTASTA----------VTTTTAGDTTSIDSRLSPETGRV 60

Query: 61  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFG-GIRQS 120
            KP RRRSRASRRTPTTLLNTDT+NFRAMVQQ+TGGP+           ++ FG G   S
Sbjct: 61  TKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPS-----------AMAFGSGNTTS 120

Query: 121 NFSTPPNAVISPPSGYLLQQPPQFYNHNPQQFVFPTAAHGGDFLQRLSAPRPANG--GVS 180
            FS   +   S PS    QQ P  YN  P     P       ++  L+   P  G   ++
Sbjct: 121 AFSLTSS---SDPSAGSSQQAPWQYNFQPHA---PLQPPQRPYMFSLNNVNPVVGYSNMN 180

Query: 181 GDGFLMESVVSS-QIPPAGASADSSNESNGGN 208
               ++  V  +      G SA SS E+   N
Sbjct: 181 NPNTMVSGVFGTVDGSGGGGSAPSSKEATNSN 185

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BLAST of Lsi07G007880 vs. TrEMBL
Match: A0A0A0KV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.6e-81
Identity = 165/208 (79.33%), Postives = 171/208 (82.21%), Query Frame = 1


Query: 5   GDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSD------TTASGNTGGSTGLNPEGR 64
           GDWLQFYHQNLSSTAAPPP SD S  EM FVDRVSD      TTAS NT GSTGLNPEGR
Sbjct: 3   GDWLQFYHQNLSSTAAPPP-SDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGR 62

Query: 65  VGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGGIRQS 124
           VGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFGGI QS
Sbjct: 63  VGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQS 122

Query: 125 NFSTPPNAVIS-PPSGYLLQQPPQFYNHNPQQFVFPTAAHGGDFLQRLSAPRPANGGVSG 184
           NF T  NA IS PPSGYLLQQPPQ YNHNPQQF+FPT AHGGDFLQRLSAPRPANG V+G
Sbjct: 123 NFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVAG 182

Query: 185 DGFLMESVVSSQIPPAGASADSSNESNG 206
           DGFL+ES +         +A  S+E  G
Sbjct: 183 DGFLIESAIPPTRAMGVMAAYCSDEEEG 209

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BLAST of Lsi07G007880 vs. TrEMBL
Match: A0A061DLC3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_002034 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-34
Identity = 110/233 (47.21%), Postives = 136/233 (58.37%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLSSTAAPPPP---------SDQSNPEMIFVDRVSDTTA-----SGN 60
           MSGP DW QFY QNLS   AP             DQ +   +    ++ ++A     SG 
Sbjct: 5   MSGPTDWAQFYQQNLSVQEAPNRGRVVSSESAFGDQGSDATVVTTTITSSSAPSPLASGP 64

Query: 61  TGGSTG-LNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF-ASSI 120
            G S G L+PEGRV KP+RRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF   S 
Sbjct: 65  AGSSAGHLSPEGRVSKPLRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFPGHSG 124

Query: 121 SPNFSLGFGGIRQSNFSTPPNAVISPPSGYLL--------QQPPQFYNHNPQQFVFPTAA 180
            PNF  GFGG RQ + +  P +++ PP G+ L        QQ  QF   N Q ++F  ++
Sbjct: 125 GPNFGFGFGG-RQPHVN--PGSLMIPPGGFHLQYQQQQQPQQQHQFQQQN-QPYMFSLSS 184

Query: 181 H----GGDFLQRLSA-PRPANGGVSGDGFLMESVVSSQIPPAGASADSSNESN 205
           +    G  FLQRL   PRP   G   DGF++E   SSQ+PP+   + + N SN
Sbjct: 185 NNPGAGDLFLQRLGGNPRPNMEG--SDGFVVEG-ASSQVPPSRTPSSNENRSN 230

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BLAST of Lsi07G007880 vs. TrEMBL
Match: A0A0D2TGR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G173300 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.8e-33
Identity = 111/247 (44.94%), Postives = 132/247 (53.44%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSDTTA----------------- 60
           MS P DW QFY   LS+   P      ++ E +F D+ SDT                   
Sbjct: 1   MSTPTDWPQFYDHALSNQEIPNRVRILTS-ESVFGDQGSDTAVLTTPTVTSSSAPLSSLG 60

Query: 61  SGNTGGSTG--LNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFA 120
           SG  GGS+G  L+PEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PFA
Sbjct: 61  SGLGGGSSGGHLSPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFA 120

Query: 121 SSI----SPNFSLGFGGIRQSNFSTPPNAVISPPSGYLL------QQPPQFYNHNPQQFV 180
                   PNF  GFG   Q + S P N ++ PP+G+ L      Q   Q  +H  Q  +
Sbjct: 121 GGAPHHGGPNFGYGFGTRHQPHNSNPNNPLMLPPTGFHLQYQQQQQHQNQLIHHQNQPLM 180

Query: 181 FP------TAAHGGDFLQRLSAPRPANGGVSGDGFLMESVVSSQIPPAGASADSSNESNG 213
           F       + A G  F QRL        GV G   +  S  SSQ+P +  S  SSN+ N 
Sbjct: 181 FSLNSNDNSPAPGELFFQRL--------GVGGGVNMQGSDASSQVPASRTSTSSSND-NR 237

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BLAST of Lsi07G007880 vs. TrEMBL
Match: B9HCD7_POPTR (VQ motif-containing family protein OS=Populus trichocarpa GN=POPTR_0006s00810g PE=4 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 5.9e-31
Identity = 102/248 (41.13%), Postives = 126/248 (50.81%), Query Frame = 1


Query: 4   PGDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSDTTA----------------SGNT 63
           P DW QFY QNLS+   PP          +F DRV+D+T                 S N+
Sbjct: 9   PTDWSQFYQQNLSNQVLPPI-------RPMFRDRVADSTTVTTTTINTSGVPNPMGSSNS 68

Query: 64  GGSTG--LNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSI- 123
             S G  L+PEGRV KP+R+RSRASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PFAS   
Sbjct: 69  SSSAGRHLSPEGRVAKPIRKRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFASGSQ 128

Query: 124 --SPNFSLGFGGIRQSNFSTPPNAVISPPSGYLL----QQPPQF--YNHNPQQFVF---- 183
             + NF    G  RQ++    P+ V+ PP+GY L    QQ  QF   + +P  ++F    
Sbjct: 129 INATNFGFALGAYRQAHHVNQPSPVMMPPAGYNLQYQQQQQQQFQQQSQHPSSYMFSLGN 188

Query: 184 ---------PTAAHGGDFLQRLSAPRPANGGV----SGDGFLMESVVSSQIPPAGASADS 208
                     T   G  F QRL  PR     +     G G    +V+SS + P      S
Sbjct: 189 SNIGTSTTTTTTTPGDMFFQRLGNPRVPTTSMEVSDQGFGSTEGAVISSLVAPPSRPPSS 248

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BLAST of Lsi07G007880 vs. TrEMBL
Match: W9REZ9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009324 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.8e-30
Identity = 108/231 (46.75%), Postives = 135/231 (58.44%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSDTTA--SGNTGGSTG-----L 60
           MS P +W+QFY+QN S      P +  +    I  DRVSD TA  +  TG ++      L
Sbjct: 5   MSNPTEWMQFYNQNFSGQ----PQASTTTQPTILPDRVSDATAVTAAVTGSASPTVPNRL 64

Query: 61  NPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSIS-PNFS-LG 120
           +PEGRV KPVRRR+RASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PFAS  S P  S   
Sbjct: 65  SPEGRVSKPVRRRTRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFASVGSHPGASAFA 124

Query: 121 FG-GIRQSNFSTPPNAVISPPSG--------YLLQQPPQFYNHNPQQFVFPTAAHGG--- 180
           FG G RQ +F+  P+AV+ P +         +L QQ    +    QQ++F     GG   
Sbjct: 125 FGLGARQGSFAN-PSAVMVPAAQAGNYHHTLHLHQQNLYHHQRQNQQYMFGGGGSGGAGN 184

Query: 181 -DFLQRLSAPRP--ANGGVSG----DGFLMESVVSSQIPPAGASADSSNES 204
             F QRLS+ RP  +N GV      +GFL  +V S  + PA A+A  S+ S
Sbjct: 185 DSFFQRLSSGRPVVSNMGVGNINTTEGFL-NTVGSQAVAPAAATARPSSNS 229

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BLAST of Lsi07G007880 vs. TAIR10
Match: AT3G22160.1 (AT3G22160.1 VQ motif-containing protein)

HSP 1 Score: 88.2 bits (217), Expect = 6.6e-18
Identity = 79/212 (37.26%), Postives = 101/212 (47.64%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSDTTASGNTGGSTGLNPE-GRV 60
           M+ P +W QFY+ N +        S            V+ TTA   T   + L+PE GRV
Sbjct: 1   MANPNEWSQFYNNNQTFFTTSTTASTA----------VTTTTAGDTTSIDSRLSPETGRV 60

Query: 61  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFG-GIRQS 120
            KP RRRSRASRRTPTTLLNTDT+NFRAMVQQ+TGGP+           ++ FG G   S
Sbjct: 61  TKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPS-----------AMAFGSGNTTS 120

Query: 121 NFSTPPNAVISPPSGYLLQQPPQFYNHNPQQFVFPTAAHGGDFLQRLSAPRPANG--GVS 180
            FS   +   S PS    QQ P  YN  P     P       ++  L+   P  G   ++
Sbjct: 121 AFSLTSS---SDPSAGSSQQAPWQYNFQPHA---PLQPPQRPYMFSLNNVNPVVGYSNMN 180

Query: 181 GDGFLMESVVSS-QIPPAGASADSSNESNGGN 208
               ++  V  +      G SA SS E+   N
Sbjct: 181 NPNTMVSGVFGTVDGSGGGGSAPSSKEATNSN 185

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BLAST of Lsi07G007880 vs. TAIR10
Match: AT4G15120.1 (AT4G15120.1 VQ motif-containing protein)

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-17
Identity = 78/205 (38.05%), Postives = 91/205 (44.39%), Query Frame = 1


Query: 6   DWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSDTTASGNTGGSTGLNPEGR-VGKPVR 65
           DW QFY+     T A    +               TT +  T   + L+P+ R V KP R
Sbjct: 7   DWSQFYNNQTFFTTATSTVT---------------TTTTTATSADSPLSPDNRRVAKPTR 66

Query: 66  RRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFASSISPNFSLGFGGIRQSNFSTP 125
           RRSRASRRTPTTL NTDT NFRAMVQQFTGGP+   F SS S  FSL          S P
Sbjct: 67  RRSRASRRTPTTLFNTDTANFRAMVQQFTGGPSAVAFGSSPSSGFSL--------TSSDP 126

Query: 126 PNAVISPPSGYLLQQPPQFYNHNPQQFVFPTAAHGGDFLQRLSAPRPANGGVSGDGFLME 185
              V S P  Y   Q    +N   QQ   P      + +  LS P      V+ DGF+  
Sbjct: 127 TAGVSSSPWQYANLQNQMAHNELMQQ-QRPYMFSSSNNVSTLSYP----NAVATDGFV-- 169

Query: 186 SVVSSQIPPAGASADSSNESNGGNG 209
                        A+ S E  GG G
Sbjct: 187 ------------GAEESREGGGGGG 169

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BLAST of Lsi07G007880 vs. TAIR10
Match: AT4G39720.1 (AT4G39720.1 VQ motif-containing protein)

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-12
Identity = 69/217 (31.80%), Postives = 98/217 (45.16%), Query Frame = 1


Query: 8   LQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSDTTAS---GNTGGSTGLNPEGRVG--KP 67
           L F H N +S     PP+  +N   + V++  D  +      +  ++ L P   +G  K 
Sbjct: 57  LHFDHNNNNSLI---PPNYFNNNTFLPVNQQPDPISQLDLRTSSATSSLPPTNNIGVIKK 116

Query: 68  VRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSIS------PNFSLGFGGIR 127
            ++RSRASRR PTT+L TDT+NFRAMVQ+FTG P PP  ++ S       N  LG     
Sbjct: 117 TKKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPLFNNNSIVNTTRLNTFLGLSSSS 176

Query: 128 QSNFSTPPNAVISPPSGYLLQQPPQFYNHNPQQFVFPTAAHGGDFLQRL-----SAPRPA 187
            + ++T  N ++ P +  L    P       QQ+  P        LQ L     S PR  
Sbjct: 177 PNTYNT-NNLLLRPFAQKLTPATPLLSGSQIQQYQNPNNGFEDMNLQALLQAHISNPRSN 236

Query: 188 NGGVSGDGFLMESVVSSQIPPAGASADSSNESNGGNG 209
                G G +      S  PP   +A + N + G NG
Sbjct: 237 EHDQFGLGMMQ---TPSTNPPTTTAAANGNINTGDNG 266

[Close]

BLAST of Lsi07G007880 vs. TAIR10
Match: AT5G65170.1 (AT5G65170.1 VQ motif-containing protein)

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-10
Identity = 53/154 (34.42%), Postives = 75/154 (48.70%), Query Frame = 1


Query: 17  STAAPPPPSDQ----SNPEMIFVDRVSDTTASG---------NTGGSTGLNPEGRVGKPV 76
           S   PPP S +    +NP    +  V +T  +            G +T  NP        
Sbjct: 88  SRPVPPPISSEQVFFTNPLQQNLRTVPNTNTTSPICSVPTDKKNGLATTRNP-------- 147

Query: 77  RRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFA--SSISPNFSLGFGGIRQSNFS 136
           ++RSR SRR PTT+L TDT+NFRAMVQ+FTG P+ PF   SS  P       G   S+ S
Sbjct: 148 KKRSRVSRRAPTTVLTTDTSNFRAMVQEFTGNPSTPFTGLSSSFPRSRFDLFGSSSSSSS 207

Query: 137 TP----PNAVISPP--SGYLLQQPPQFYNHNPQQ 150
            P    P+ +ISP   + + L    ++++H+  Q
Sbjct: 208 RPMKPFPHKLISPSTLNHHYLPPSSEYHHHHQHQ 233

[Close]

BLAST of Lsi07G007880 vs. TAIR10
Match: AT1G35830.1 (AT1G35830.1 VQ motif-containing protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-09
Identity = 37/96 (38.54%), Postives = 50/96 (52.08%), Query Frame = 1


Query: 64  RRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPN------FSLGFGGIRQ 123
           R+R+RASRR PTT+L TDT+NFRAMVQ+FTG P  PF+   S        F      +  
Sbjct: 100 RKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPFSHPFSSTTRRFDIFRSPSDPLTY 159

Query: 124 SNFSTPPNAVISPPSGYLLQQPPQFYNHNPQQFVFP 154
           + F   P   ++P +  LL      ++H      FP
Sbjct: 160 NPFRPIPQKPLNPSTSSLL----NLHHHTTTSMTFP 191

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BLAST of Lsi07G007880 vs. NCBI nr
Match: gi|659101968|ref|XP_008451884.1| (PREDICTED: uncharacterized protein LOC103493042 [Cucumis melo])

HSP 1 Score: 369.0 bits (946), Expect = 5.5e-99
Identity = 189/209 (90.43%), Postives = 191/209 (91.39%), Query Frame = 1


Query: 5   GDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSDTTASGNTGGSTGLNPEGRVGKPVR 64
           GDWLQFYHQNLSSTA PPPPS  S  EMIF DRVSD TAS NT GSTGLNPEGRVGKPVR
Sbjct: 3   GDWLQFYHQNLSSTA-PPPPSHHSTSEMIFADRVSDATASANTLGSTGLNPEGRVGKPVR 62

Query: 65  RRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGGIRQSNFSTPP 124
           RRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFGGIRQSNFST  
Sbjct: 63  RRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIRQSNFSTSQ 122

Query: 125 NAVIS-PPSGYLLQQPPQFYNHNPQQFVFPTAAHGGDFLQRLSAPRPANGGVSGDGFLME 184
           NA IS PPSGYLLQQPPQ YNHNPQ FVFPT AHGGDFLQRLSAPRPANGGV+GDGFL+E
Sbjct: 123 NAAISPPPSGYLLQQPPQLYNHNPQPFVFPTVAHGGDFLQRLSAPRPANGGVAGDGFLIE 182

Query: 185 SVVSSQIPPAGASADSSNESNGGNGRLLF 213
           S VSSQIPPAGASADSSNESNGGNGRLLF
Sbjct: 183 SAVSSQIPPAGASADSSNESNGGNGRLLF 210

[Close]

BLAST of Lsi07G007880 vs. NCBI nr
Match: gi|778691256|ref|XP_011653250.1| (PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 2.6e-96
Identity = 188/215 (87.44%), Postives = 191/215 (88.84%), Query Frame = 1


Query: 5   GDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSD------TTASGNTGGSTGLNPEGR 64
           GDWLQFYHQNLSSTAAPPP SD S  EM FVDRVSD      TTAS NT GSTGLNPEGR
Sbjct: 3   GDWLQFYHQNLSSTAAPPP-SDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGR 62

Query: 65  VGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGGIRQS 124
           VGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFGGI QS
Sbjct: 63  VGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQS 122

Query: 125 NFSTPPNAVIS-PPSGYLLQQPPQFYNHNPQQFVFPTAAHGGDFLQRLSAPRPANGGVSG 184
           NF T  NA IS PPSGYLLQQPPQ YNHNPQQF+FPT AHGGDFLQRLSAPRPANG V+G
Sbjct: 123 NFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVAG 182

Query: 185 DGFLMESVVSSQIPPAGASADSSNESNGGNGRLLF 213
           DGFL+ES VSSQIPPAGASADSSNESNGGNGRLLF
Sbjct: 183 DGFLIESAVSSQIPPAGASADSSNESNGGNGRLLF 216

[Close]

BLAST of Lsi07G007880 vs. NCBI nr
Match: gi|700198327|gb|KGN53485.1| (hypothetical protein Csa_4G056730 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 2.3e-81
Identity = 165/208 (79.33%), Postives = 171/208 (82.21%), Query Frame = 1


Query: 5   GDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSD------TTASGNTGGSTGLNPEGR 64
           GDWLQFYHQNLSSTAAPPP SD S  EM FVDRVSD      TTAS NT GSTGLNPEGR
Sbjct: 3   GDWLQFYHQNLSSTAAPPP-SDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGR 62

Query: 65  VGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGGIRQS 124
           VGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFGGI QS
Sbjct: 63  VGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQS 122

Query: 125 NFSTPPNAVIS-PPSGYLLQQPPQFYNHNPQQFVFPTAAHGGDFLQRLSAPRPANGGVSG 184
           NF T  NA IS PPSGYLLQQPPQ YNHNPQQF+FPT AHGGDFLQRLSAPRPANG V+G
Sbjct: 123 NFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVAG 182

Query: 185 DGFLMESVVSSQIPPAGASADSSNESNG 206
           DGFL+ES +         +A  S+E  G
Sbjct: 183 DGFLIESAIPPTRAMGVMAAYCSDEEEG 209

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BLAST of Lsi07G007880 vs. NCBI nr
Match: gi|590711222|ref|XP_007049045.1| (Uncharacterized protein TCM_002034 [Theobroma cacao])

HSP 1 Score: 153.7 bits (387), Expect = 3.6e-34
Identity = 110/233 (47.21%), Postives = 136/233 (58.37%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLSSTAAPPPP---------SDQSNPEMIFVDRVSDTTA-----SGN 60
           MSGP DW QFY QNLS   AP             DQ +   +    ++ ++A     SG 
Sbjct: 5   MSGPTDWAQFYQQNLSVQEAPNRGRVVSSESAFGDQGSDATVVTTTITSSSAPSPLASGP 64

Query: 61  TGGSTG-LNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF-ASSI 120
            G S G L+PEGRV KP+RRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF   S 
Sbjct: 65  AGSSAGHLSPEGRVSKPLRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFPGHSG 124

Query: 121 SPNFSLGFGGIRQSNFSTPPNAVISPPSGYLL--------QQPPQFYNHNPQQFVFPTAA 180
            PNF  GFGG RQ + +  P +++ PP G+ L        QQ  QF   N Q ++F  ++
Sbjct: 125 GPNFGFGFGG-RQPHVN--PGSLMIPPGGFHLQYQQQQQPQQQHQFQQQN-QPYMFSLSS 184

Query: 181 H----GGDFLQRLSA-PRPANGGVSGDGFLMESVVSSQIPPAGASADSSNESN 205
           +    G  FLQRL   PRP   G   DGF++E   SSQ+PP+   + + N SN
Sbjct: 185 NNPGAGDLFLQRLGGNPRPNMEG--SDGFVVEG-ASSQVPPSRTPSSNENRSN 230

[Close]

BLAST of Lsi07G007880 vs. NCBI nr
Match: gi|763775772|gb|KJB42895.1| (hypothetical protein B456_007G173300 [Gossypium raimondii])

HSP 1 Score: 149.4 bits (376), Expect = 6.9e-33
Identity = 111/247 (44.94%), Postives = 132/247 (53.44%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLSSTAAPPPPSDQSNPEMIFVDRVSDTTA----------------- 60
           MS P DW QFY   LS+   P      ++ E +F D+ SDT                   
Sbjct: 1   MSTPTDWPQFYDHALSNQEIPNRVRILTS-ESVFGDQGSDTAVLTTPTVTSSSAPLSSLG 60

Query: 61  SGNTGGSTG--LNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFA 120
           SG  GGS+G  L+PEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PFA
Sbjct: 61  SGLGGGSSGGHLSPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFA 120

Query: 121 SSI----SPNFSLGFGGIRQSNFSTPPNAVISPPSGYLL------QQPPQFYNHNPQQFV 180
                   PNF  GFG   Q + S P N ++ PP+G+ L      Q   Q  +H  Q  +
Sbjct: 121 GGAPHHGGPNFGYGFGTRHQPHNSNPNNPLMLPPTGFHLQYQQQQQHQNQLIHHQNQPLM 180

Query: 181 FP------TAAHGGDFLQRLSAPRPANGGVSGDGFLMESVVSSQIPPAGASADSSNESNG 213
           F       + A G  F QRL        GV G   +  S  SSQ+P +  S  SSN+ N 
Sbjct: 181 FSLNSNDNSPAPGELFFQRL--------GVGGGVNMQGSDASSQVPASRTSTSSSND-NR 237

The following BLAST results are available for this feature:

BLAST of Lsi07G007880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ22_ARATH	1.2e-16	37.26	VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1	[more]

BLAST of Lsi07G007880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV74_CUCSA	1.6e-81	79.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1	[more]
A0A061DLC3_THECC	2.5e-34	47.21	Uncharacterized protein OS=Theobroma cacao GN=TCM_002034 PE=4 SV=1	[more]
A0A0D2TGR0_GOSRA	4.8e-33	44.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G173300 PE=4 SV=1	[more]
B9HCD7_POPTR	5.9e-31	41.13	VQ motif-containing family protein OS=Populus trichocarpa GN=POPTR_0006s00810g P...	[more]
W9REZ9_9ROSA	3.8e-30	46.75	Uncharacterized protein OS=Morus notabilis GN=L484_009324 PE=4 SV=1	[more]

BLAST of Lsi07G007880 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22160.1	6.6e-18	37.26	VQ motif-containing protein	[more]
AT4G15120.1	9.6e-17	38.05	VQ motif-containing protein	[more]
AT4G39720.1	4.2e-12	31.80	VQ motif-containing protein	[more]
AT5G65170.1	5.1e-10	34.42	VQ motif-containing protein	[more]
AT1G35830.1	2.5e-09	38.54	VQ motif-containing protein	[more]

BLAST of Lsi07G007880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101968\|ref\|XP_008451884.1\|	5.5e-99	90.43	PREDICTED: uncharacterized protein LOC103493042 [Cucumis melo]	[more]
gi\|778691256\|ref\|XP_011653250.1\|	2.6e-96	87.44	PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus]	[more]
gi\|700198327\|gb\|KGN53485.1\|	2.3e-81	79.33	hypothetical protein Csa_4G056730 [Cucumis sativus]	[more]
gi\|590711222\|ref\|XP_007049045.1\|	3.6e-34	47.21	Uncharacterized protein TCM_002034 [Theobroma cacao]	[more]
gi\|763775772\|gb\|KJB42895.1\|	6.9e-33	44.94	hypothetical protein B456_007G173300 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G007880.1	Lsi07G007880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 72..99 score: 4.9
None	No IPR available	PANTHER	PTHR33179	FAMILY NOT NAMED	coord: 1..149 score: 3.1
None	No IPR available	PANTHER	PTHR33179:SF7	GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MKA23	coord: 1..149 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G007880	Csa4G056730	Cucumber (Chinese Long) v2	culsiB304
Lsi07G007880	CSPI04G07050	Wild cucumber (PI 183967)	cpilsiB304
Lsi07G007880	Cucsa.180120	Cucumber (Gy14) v1	cgylsiB301
Lsi07G007880	CmaCh04G006070	Cucurbita maxima (Rimu)	cmalsiB695
Lsi07G007880	CmaCh16G004950	Cucurbita maxima (Rimu)	cmalsiB325
Lsi07G007880	Cla005447	Watermelon (97103) v1	lsiwmB440
Lsi07G007880	MELO3C016231	Melon (DHL92) v3.5.1	lsimeB449
Lsi07G007880	ClCG07G010990	Watermelon (Charleston Gray)	lsiwcgB412
Lsi07G007880	MELO3C016231.2	Melon (DHL92) v3.6.1	lsimedB467
Lsi07G007880	Cla97C07G137730	Watermelon (97103) v2	lsiwmbB411
Lsi07G007880	Bhi01G002369	Wax gourd	lsiwgoB544
Lsi07G007880	Cp4.1LG14g03000	Cucurbita pepo (Zucchini)	cpelsiB184
Lsi07G007880	Cp4.1LG01g01160	Cucurbita pepo (Zucchini)	cpelsiB372
Lsi07G007880	CsGy4G006970	Cucumber (Gy14) v2	cgyblsiB278
Lsi07G007880	Carg11411	Silver-seed gourd	carlsiB596
Lsi07G007880	Carg13137	Silver-seed gourd	carlsiB043
Lsi07G007880	CsaV3_4G007280	Cucumber (Chinese Long) v3	cuclsiB323
Lsi07G007880	CsaV3_4G032360	Cucumber (Chinese Long) v3	cuclsiB335

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G007880	Cucurbita moschata (Rifu)	cmolsiB314
Lsi07G007880	Cucurbita moschata (Rifu)	cmolsiB689
Lsi07G007880	Melon (DHL92) v3.5.1	lsimeB455
Lsi07G007880	Melon (DHL92) v3.6.1	lsimedB472