Cp4.1LG14g03000 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g03000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	VQ motif-containing family protein
Location	Cp4.1LG14 : 2622622 .. 2623233 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTCCAACCACGGCGGCGCCACCGCCTTCCGATCAATCCACCTCCGAGATGATCTTCGTCGATCGAGTTTCCGACGCCATCGCCTCCGCAAACACCGGCGCTTCCACTGGCTTGAATCCGGAACGTCGTGTAGCAAAGCCGGTTCGCCGCCGGTCCAGGACGTCTCGGCGGACTCCGACGACCTTGCTCAATACAGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACCGGCGGTCCAACTCCGCCTTTCGCCTCATCGATTTCCCCCAATTTTTCGTTAGGGTTCGGCGCGATTCCTCAATCGAATTCCGGCATGATTTCTCCGCCGTCTGGTTATCCACTGCAGTTTTACCATCACAACCCCCAACCGTTCGTGATTCCAGCATCCGCACACGGCGGCGAATTTCTTCAGAGGCTATCCGCCGCGAAGCCAGGAAATGGCGGAGTCGCCGCAGACGGATTTCTGATGGAAAGTGCAGTTTCTTCTCAAATTCCTCCCACCGGAGCTACGGCAGATTCCTCCAACAAAAGCAACGGCGGAAGTGGCGGCGGCTTTCTGTTCTGA

mRNA sequence

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTCCAACCACGGCGGCGCCACCGCCTTCCGATCAATCCACCTCCGAGATGATCTTCGTCGATCGAGTTTCCGACGCCATCGCCTCCGCAAACACCGGCGCTTCCACTGGCTTGAATCCGGAACGTCGTGTAGCAAAGCCGGTTCGCCGCCGGTCCAGGACGTCTCGGCGGACTCCGACGACCTTGCTCAATACAGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACCGGCGGTCCAACTCCGCCTTTCGCCTCATCGATTTCCCCCAATTTTTCGTTAGGGTTCGGCGCGATTCCTCAATCGAATTCCGGCATGATTTCTCCGCCGTCTGGTTATCCACTGCAGTTTTACCATCACAACCCCCAACCGTTCGTGATTCCAGCATCCGCACACGGCGGCGAATTTCTTCAGAGGCTATCCGCCGCGAAGCCAGGAAATGGCGGAGTCGCCGCAGACGGATTTCTGATGGAAAGTGCAGTTTCTTCTCAAATTCCTCCCACCGGAGCTACGGCAGATTCCTCCAACAAAAGCAACGGCGGAAGTGGCGGCGGCTTTCTGTTCTGA

Coding sequence (CDS)

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTCCAACCACGGCGGCGCCACCGCCTTCCGATCAATCCACCTCCGAGATGATCTTCGTCGATCGAGTTTCCGACGCCATCGCCTCCGCAAACACCGGCGCTTCCACTGGCTTGAATCCGGAACGTCGTGTAGCAAAGCCGGTTCGCCGCCGGTCCAGGACGTCTCGGCGGACTCCGACGACCTTGCTCAATACAGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACCGGCGGTCCAACTCCGCCTTTCGCCTCATCGATTTCCCCCAATTTTTCGTTAGGGTTCGGCGCGATTCCTCAATCGAATTCCGGCATGATTTCTCCGCCGTCTGGTTATCCACTGCAGTTTTACCATCACAACCCCCAACCGTTCGTGATTCCAGCATCCGCACACGGCGGCGAATTTCTTCAGAGGCTATCCGCCGCGAAGCCAGGAAATGGCGGAGTCGCCGCAGACGGATTTCTGATGGAAAGTGCAGTTTCTTCTCAAATTCCTCCCACCGGAGCTACGGCAGATTCCTCCAACAAAAGCAACGGCGGAAGTGGCGGCGGCTTTCTGTTCTGA

Protein sequence

MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQSNSGMISPPSGYPLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAADGFLMESAVSSQIPPTGATADSSNKSNGGSGGGFLF

Homology

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BLAST of Cp4.1LG14g03000 vs. Swiss-Prot
Match: VQ22_ARATH (VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-15
Identity = 61/140 (43.57%), Postives = 78/140 (55.71%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPER-RVA 60
           M+ P +W QFY+ N   T     +  ST+       V+   A   T   + L+PE  RV 
Sbjct: 1   MANPNEWSQFYNNN--QTFFTTSTTASTA-------VTTTTAGDTTSIDSRLSPETGRVT 60

Query: 61  KPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFAS-SISPNFSLGFGAIPQS 120
           KP RRRSR SRRTPTTLLNTDT+NFRAMVQQ+TGGP+   F S + +  FSL   + P +
Sbjct: 61  KPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSSDPSA 120

Query: 121 NSGMISPPSGYPLQFYHHNP 138
            S   +P   +   F  H P
Sbjct: 121 GSSQQAP---WQYNFQPHAP 128

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BLAST of Cp4.1LG14g03000 vs. TrEMBL
Match: A0A0A0KV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 142/197 (72.08%), Postives = 150/197 (76.14%), Query Frame = 1


Query: 5   GDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAI------ASANTGASTGLNPERRV 64
           GDWLQFYHQNL +TAAPPPSD STSEM FVDRVSDA       AS NT  STGLNPE RV
Sbjct: 3   GDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGRV 62

Query: 65  AKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQS- 124
            KPVRRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFG I QS 
Sbjct: 63  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQSN 122

Query: 125 -----NSGMISPPSGY----PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAAD 184
                N+ +  PPSGY    P Q Y+HNPQ F+ P  AHGG+FLQRLSA +P NG VA D
Sbjct: 123 FPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVAGD 182

Query: 185 GFLMESAVSSQIPPTGA 186
           GFL+ESA    IPPT A
Sbjct: 183 GFLIESA----IPPTRA 195

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BLAST of Cp4.1LG14g03000 vs. TrEMBL
Match: A0A061DLC3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_002034 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.5e-33
Identity = 105/228 (46.05%), Postives = 130/228 (57.02%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDA---------------IASAN 60
           MSGP DW QFY QNL    AP      +SE  F D+ SDA               +AS  
Sbjct: 5   MSGPTDWAQFYQQNLSVQEAPNRGRVVSSESAFGDQGSDATVVTTTITSSSAPSPLASGP 64

Query: 61  TGASTG-LNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF-ASSI 120
            G+S G L+PE RV+KP+RRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF   S 
Sbjct: 65  AGSSAGHLSPEGRVSKPLRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFPGHSG 124

Query: 121 SPNFSLGFGA-IPQSNSG-MISPPSGYPLQF-----------YHHNPQPFVIPASAH--- 180
            PNF  GFG   P  N G ++ PP G+ LQ+           +    QP++   S++   
Sbjct: 125 GPNFGFGFGGRQPHVNPGSLMIPPGGFHLQYQQQQQPQQQHQFQQQNQPYMFSLSSNNPG 184

Query: 181 -GGEFLQRLSAAKPGNGGVAADGFLMESAVSSQIPPTGATADSSNKSN 195
            G  FLQRL    P      +DGF++E A SSQ+PP+   + + N+SN
Sbjct: 185 AGDLFLQRL-GGNPRPNMEGSDGFVVEGA-SSQVPPSRTPSSNENRSN 230

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BLAST of Cp4.1LG14g03000 vs. TrEMBL
Match: A0A0D2TGR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G173300 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.4e-26
Identity = 99/235 (42.13%), Postives = 117/235 (49.79%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSD-----------------AIAS 60
           MS P DW QFY   L     P      TSE +F D+ SD                 ++ S
Sbjct: 1   MSTPTDWPQFYDHALSNQEIPNRVRILTSESVFGDQGSDTAVLTTPTVTSSSAPLSSLGS 60

Query: 61  ANTGASTG--LNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFAS 120
              G S+G  L+PE RV KPVRRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PFA 
Sbjct: 61  GLGGGSSGGHLSPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFAG 120

Query: 121 SI----SPNFSLGFGAIPQ-----SNSGMISPPSGYPLQF----------YHHNPQPFVI 180
                  PNF  GFG   Q      N+ ++ PP+G+ LQ+           HH  QP + 
Sbjct: 121 GAPHHGGPNFGYGFGTRHQPHNSNPNNPLMLPPTGFHLQYQQQQQHQNQLIHHQNQPLMF 180

Query: 181 P------ASAHGGEFLQRLSAAKPGNGGVAADGFLMESAVSSQIPPTGATADSSN 192
                  + A G  F QRL       GGV   G    S  SSQ+P +  +  SSN
Sbjct: 181 SLNSNDNSPAPGELFFQRLGV----GGGVNMQG----SDASSQVPASRTSTSSSN 227

[Close]

BLAST of Cp4.1LG14g03000 vs. TrEMBL
Match: A0A067LFD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00483 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.1e-26
Identity = 94/219 (42.92%), Postives = 120/219 (54.79%), Query Frame = 1


Query: 1   MSGPGDWLQFY-HQNLPTTAAPPPSDQSTSEMIFVDRVSDAI---ASANTGASTG--LNP 60
           MS P DW QFY HQ+  T  +   SD +          S  +    S+ +G+ T   L+P
Sbjct: 1   MSNPSDWGQFYNHQHNHTMFSDGVSDATVVTTTITSSTSPTLLGSGSSGSGSPTAAHLSP 60

Query: 61  ERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSIS--PNFSLGFG 120
           E RVAKPVRRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF+SS S     S  FG
Sbjct: 61  EGRVAKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFSSSGSHLTTSSFNFG 120

Query: 121 AIP-QSNSGMISPPSGYPLQFYHHNPQPFVI-----PASAHGGEFLQRLSAAKPGNGGVA 180
             P Q +   + P +GY    Y    QP  +      +  +G  F QRL   +P    V+
Sbjct: 121 MNPRQVHVNPMVPAAGYHNLQYQQQNQPSYLFSLGNNSPGNGDLFFQRLGNPRPTGMDVS 180

Query: 181 ADGFLMESAVSSQI--PPTGATADSSNKSNGGSGGGFLF 204
           +DG +M+   + Q+  PPT     SSN++   +   FLF
Sbjct: 181 SDGLVMDGVSAQQVAAPPTRPPPSSSNENRSNT---FLF 216

[Close]

BLAST of Cp4.1LG14g03000 vs. TrEMBL
Match: W9REZ9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009324 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 102/240 (42.50%), Postives = 128/240 (53.33%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIA--SANTGASTG-----LN 60
           MS P +W+QFY+QN    +  P +  +T   I  DRVSDA A  +A TG+++      L+
Sbjct: 5   MSNPTEWMQFYNQNF---SGQPQASTTTQPTILPDRVSDATAVTAAVTGSASPTVPNRLS 64

Query: 61  PERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSIS----PNFSL 120
           PE RV+KPVRRR+R SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PFAS  S      F+ 
Sbjct: 65  PEGRVSKPVRRRTRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFASVGSHPGASAFAF 124

Query: 121 GFGAIPQS--NSGMISPPSG-----------YPLQFYHH--NPQPFVIPASAHGG----E 180
           G GA   S  N   +  P+            +    YHH    Q ++      GG     
Sbjct: 125 GLGARQGSFANPSAVMVPAAQAGNYHHTLHLHQQNLYHHQRQNQQYMFGGGGSGGAGNDS 184

Query: 181 FLQRLSAAKP--GNGGV----AADGFLMESAVSSQIPPTGATA-DSSNKSNGGSGGGFLF 204
           F QRLS+ +P   N GV      +GFL  +  S  + P  ATA  SSN  N      FL+
Sbjct: 185 FFQRLSSGRPVVSNMGVGNINTTEGFL-NTVGSQAVAPAAATARPSSNSPNEDRSNSFLY 240

[Close]

BLAST of Cp4.1LG14g03000 vs. TAIR10
Match: AT4G15120.1 (AT4G15120.1 VQ motif-containing protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 78/202 (38.61%), Postives = 94/202 (46.53%), Query Frame = 1


Query: 6   DWLQFYH-QNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPE-RRVAKPVR 65
           DW QFY+ Q   TTA    +  +T+                T A + L+P+ RRVAKP R
Sbjct: 7   DWSQFYNNQTFFTTATSTVTTTTTTA---------------TSADSPLSPDNRRVAKPTR 66

Query: 66  RRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFASSISPNFSLGFGAIPQSNSGMI 125
           RRSR SRRTPTTL NTDT NFRAMVQQFTGGP+   F SS S  FSL         +G+ 
Sbjct: 67  RRSRASRRTPTTLFNTDTANFRAMVQQFTGGPSAVAFGSSPSSGFSL---TSSDPTAGVS 126

Query: 126 SPPSGY---PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAADGFLMESAVSSQ 185
           S P  Y     Q  H+       P        +  LS        VA DGF+        
Sbjct: 127 SSPWQYANLQNQMAHNELMQQQRPYMFSSSNNVSTLSYP----NAVATDGFV-------- 172

Query: 186 IPPTGATADSSNKSNGGSGGGF 202
                  A+ S +  GG GGG+
Sbjct: 187 ------GAEESREGGGGGGGGY 172

[Close]

BLAST of Cp4.1LG14g03000 vs. TAIR10
Match: AT3G22160.1 (AT3G22160.1 VQ motif-containing protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 61/140 (43.57%), Postives = 78/140 (55.71%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPER-RVA 60
           M+ P +W QFY+ N   T     +  ST+       V+   A   T   + L+PE  RV 
Sbjct: 1   MANPNEWSQFYNNN--QTFFTTSTTASTA-------VTTTTAGDTTSIDSRLSPETGRVT 60

Query: 61  KPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFAS-SISPNFSLGFGAIPQS 120
           KP RRRSR SRRTPTTLLNTDT+NFRAMVQQ+TGGP+   F S + +  FSL   + P +
Sbjct: 61  KPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSSDPSA 120

Query: 121 NSGMISPPSGYPLQFYHHNP 138
            S   +P   +   F  H P
Sbjct: 121 GSSQQAP---WQYNFQPHAP 128

[Close]

BLAST of Cp4.1LG14g03000 vs. TAIR10
Match: AT4G39720.1 (AT4G39720.1 VQ motif-containing protein)

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-10
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1


Query: 8   LQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASAN---TGASTGLNPERRVA--KPV 67
           L F H N    +  PP+  + +  + V++  D I+  +   + A++ L P   +   K  
Sbjct: 57  LHFDHNN--NNSLIPPNYFNNNTFLPVNQQPDPISQLDLRTSSATSSLPPTNNIGVIKKT 116

Query: 68  RRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSIS 105
           ++RSR SRR PTT+L TDT+NFRAMVQ+FTG P PP  ++ S
Sbjct: 117 KKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPLFNNNS 156

[Close]

BLAST of Cp4.1LG14g03000 vs. TAIR10
Match: AT5G65170.1 (AT5G65170.1 VQ motif-containing protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-08
Identity = 53/153 (34.64%), Postives = 68/153 (44.44%), Query Frame = 1


Query: 16  PTTAAPPPSDQSTSEMIFVDR-------------VSDAIASANTGASTGLNPERRVAKPV 75
           PT  + P     +SE +F                 +  I S  T    GL   R   K  
Sbjct: 84  PTDGSRPVPPPISSEQVFFTNPLQQNLRTVPNTNTTSPICSVPTDKKNGLATTRNPKK-- 143

Query: 76  RRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLG----FGAIPQSN 135
             RSR SRR PTT+L TDT+NFRAMVQ+FTG P+ PF + +S +F       FG+   S+
Sbjct: 144 --RSRVSRRAPTTVLTTDTSNFRAMVQEFTGNPSTPF-TGLSSSFPRSRFDLFGSSSSSS 203

Query: 136 SGMISP-------PSGY------PLQFYHHNPQ 139
           S  + P       PS        P   YHH+ Q
Sbjct: 204 SRPMKPFPHKLISPSTLNHHYLPPSSEYHHHHQ 231

[Close]

BLAST of Cp4.1LG14g03000 vs. TAIR10
Match: AT1G35830.1 (AT1G35830.1 VQ motif-containing protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-08
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 1


Query: 63  RRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFA---SSISPNFSL---------- 122
           R+R+R SRR PTT+L TDT+NFRAMVQ+FTG P  PF+   SS +  F +          
Sbjct: 100 RKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPFSHPFSSTTRRFDIFRSPSDPLTY 159

Query: 123 -GFGAIPQSNSGMISPPSGYPLQFYHHNPQPFVIP 144
             F  IPQ     ++P +   L  +HH       P
Sbjct: 160 NPFRPIPQK---PLNPSTSSLLNLHHHTTTSMTFP 191

[Close]

BLAST of Cp4.1LG14g03000 vs. NCBI nr
Match: gi|659101968|ref|XP_008451884.1| (PREDICTED: uncharacterized protein LOC103493042 [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 6.7e-78
Identity = 158/204 (77.45%), Postives = 168/204 (82.35%), Query Frame = 1


Query: 5   GDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPERRVAKPVRR 64
           GDWLQFYHQNL +TA PPPS  STSEMIF DRVSDA ASANT  STGLNPE RV KPVRR
Sbjct: 3   GDWLQFYHQNLSSTAPPPPSHHSTSEMIFADRVSDATASANTLGSTGLNPEGRVGKPVRR 62

Query: 65  RSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQS------N 124
           RSR SRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFG I QS      N
Sbjct: 63  RSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIRQSNFSTSQN 122

Query: 125 SGMISPPSGY----PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAADGFLMES 184
           + +  PPSGY    P Q Y+HNPQPFV P  AHGG+FLQRLSA +P NGGVA DGFL+ES
Sbjct: 123 AAISPPPSGYLLQQPPQLYNHNPQPFVFPTVAHGGDFLQRLSAPRPANGGVAGDGFLIES 182

Query: 185 AVSSQIPPTGATADSSNKSNGGSG 199
           AVSSQIPP GA+ADSSN+SNGG+G
Sbjct: 183 AVSSQIPPAGASADSSNESNGGNG 206

[Close]

BLAST of Cp4.1LG14g03000 vs. NCBI nr
Match: gi|778691256|ref|XP_011653250.1| (PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 1.2e-74
Identity = 156/210 (74.29%), Postives = 167/210 (79.52%), Query Frame = 1


Query: 5   GDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAI------ASANTGASTGLNPERRV 64
           GDWLQFYHQNL +TAAPPPSD STSEM FVDRVSDA       AS NT  STGLNPE RV
Sbjct: 3   GDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGRV 62

Query: 65  AKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQS- 124
            KPVRRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFG I QS 
Sbjct: 63  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQSN 122

Query: 125 -----NSGMISPPSGY----PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAAD 184
                N+ +  PPSGY    P Q Y+HNPQ F+ P  AHGG+FLQRLSA +P NG VA D
Sbjct: 123 FPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVAGD 182

Query: 185 GFLMESAVSSQIPPTGATADSSNKSNGGSG 199
           GFL+ESAVSSQIPP GA+ADSSN+SNGG+G
Sbjct: 183 GFLIESAVSSQIPPAGASADSSNESNGGNG 212

[Close]

BLAST of Cp4.1LG14g03000 vs. NCBI nr
Match: gi|700198327|gb|KGN53485.1| (hypothetical protein Csa_4G056730 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 2.9e-65
Identity = 142/197 (72.08%), Postives = 150/197 (76.14%), Query Frame = 1


Query: 5   GDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAI------ASANTGASTGLNPERRV 64
           GDWLQFYHQNL +TAAPPPSD STSEM FVDRVSDA       AS NT  STGLNPE RV
Sbjct: 3   GDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGRV 62

Query: 65  AKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQS- 124
            KPVRRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFG I QS 
Sbjct: 63  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQSN 122

Query: 125 -----NSGMISPPSGY----PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAAD 184
                N+ +  PPSGY    P Q Y+HNPQ F+ P  AHGG+FLQRLSA +P NG VA D
Sbjct: 123 FPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVAGD 182

Query: 185 GFLMESAVSSQIPPTGA 186
           GFL+ESA    IPPT A
Sbjct: 183 GFLIESA----IPPTRA 195

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BLAST of Cp4.1LG14g03000 vs. NCBI nr
Match: gi|590711222|ref|XP_007049045.1| (Uncharacterized protein TCM_002034 [Theobroma cacao])

HSP 1 Score: 149.8 bits (377), Expect = 5.0e-33
Identity = 105/228 (46.05%), Postives = 130/228 (57.02%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDA---------------IASAN 60
           MSGP DW QFY QNL    AP      +SE  F D+ SDA               +AS  
Sbjct: 5   MSGPTDWAQFYQQNLSVQEAPNRGRVVSSESAFGDQGSDATVVTTTITSSSAPSPLASGP 64

Query: 61  TGASTG-LNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF-ASSI 120
            G+S G L+PE RV+KP+RRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF   S 
Sbjct: 65  AGSSAGHLSPEGRVSKPLRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFPGHSG 124

Query: 121 SPNFSLGFGA-IPQSNSG-MISPPSGYPLQF-----------YHHNPQPFVIPASAH--- 180
            PNF  GFG   P  N G ++ PP G+ LQ+           +    QP++   S++   
Sbjct: 125 GPNFGFGFGGRQPHVNPGSLMIPPGGFHLQYQQQQQPQQQHQFQQQNQPYMFSLSSNNPG 184

Query: 181 -GGEFLQRLSAAKPGNGGVAADGFLMESAVSSQIPPTGATADSSNKSN 195
            G  FLQRL    P      +DGF++E A SSQ+PP+   + + N+SN
Sbjct: 185 AGDLFLQRL-GGNPRPNMEGSDGFVVEGA-SSQVPPSRTPSSNENRSN 230

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BLAST of Cp4.1LG14g03000 vs. NCBI nr
Match: gi|1012187362|ref|XP_015969793.1| (PREDICTED: VQ motif-containing protein 22-like [Arachis duranensis])

HSP 1 Score: 129.0 bits (323), Expect = 9.2e-27
Identity = 87/187 (46.52%), Postives = 107/187 (57.22%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQN--------LPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGAST-G 60
           MS P DWLQFY+QN        +P TAA P +  +T+    +  +   + S +   S+  
Sbjct: 1   MSAPNDWLQFYNQNFPSQGNPSIPVTAATPTTATATATTSPLPGMGMMVNSGSPPTSSPN 60

Query: 61  LNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPN----- 120
           L+PE RV+KP RRRSR SRRTPTTLL TDTTNFRAMVQQFTGGP  PFA + SP      
Sbjct: 61  LSPEGRVSKPARRRSRASRRTPTTLLTTDTTNFRAMVQQFTGGPNAPFAPTASPAAPSGL 120

Query: 121 ---FSLGFGAIP----QSNSGMISPPSGYPLQFYHHNP-------QPFVIPASAHGG--- 157
                LGFG+ P     S++ M+SPP+GY LQ   H+        Q F+   S  GG   
Sbjct: 121 PNLLGLGFGSRPVPAVNSSTLMVSPPAGYLLQQQQHHQNLFQPQNQQFMYSGSTQGGGDN 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g03000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ22_ARATH	4.7e-15	43.57	VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1	[more]

BLAST of Cp4.1LG14g03000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV74_CUCSA	2.0e-65	72.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1	[more]
A0A061DLC3_THECC	3.5e-33	46.05	Uncharacterized protein OS=Theobroma cacao GN=TCM_002034 PE=4 SV=1	[more]
A0A0D2TGR0_GOSRA	2.4e-26	42.13	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G173300 PE=4 SV=1	[more]
A0A067LFD1_JATCU	7.1e-26	42.92	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00483 PE=4 SV=1	[more]
W9REZ9_9ROSA	1.2e-25	42.50	Uncharacterized protein OS=Morus notabilis GN=L484_009324 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g03000 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15120.1	2.7e-16	38.61	VQ motif-containing protein	[more]
AT3G22160.1	2.7e-16	43.57	VQ motif-containing protein	[more]
AT4G39720.1	6.4e-10	39.22	VQ motif-containing protein	[more]
AT5G65170.1	1.6e-08	34.64	VQ motif-containing protein	[more]
AT1G35830.1	2.0e-08	40.00	VQ motif-containing protein	[more]

BLAST of Cp4.1LG14g03000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101968\|ref\|XP_008451884.1\|	6.7e-78	77.45	PREDICTED: uncharacterized protein LOC103493042 [Cucumis melo]	[more]
gi\|778691256\|ref\|XP_011653250.1\|	1.2e-74	74.29	PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus]	[more]
gi\|700198327\|gb\|KGN53485.1\|	2.9e-65	72.08	hypothetical protein Csa_4G056730 [Cucumis sativus]	[more]
gi\|590711222\|ref\|XP_007049045.1\|	5.0e-33	46.05	Uncharacterized protein TCM_002034 [Theobroma cacao]	[more]
gi\|1012187362\|ref\|XP_015969793.1\|	9.2e-27	46.52	PREDICTED: VQ motif-containing protein 22-like [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g03000.1	Cp4.1LG14g03000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 71..98 score: 4.6
None	No IPR available	PANTHER	PTHR33179	FAMILY NOT NAMED	coord: 1..139 score: 1.3
None	No IPR available	PANTHER	PTHR33179:SF7	GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MKA23	coord: 1..139 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g03000	Cucsa.180120	Cucumber (Gy14) v1	cgycpeB0493
Cp4.1LG14g03000	CmaCh16G004950	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g03000	CmaCh04G006070	Cucurbita maxima (Rimu)	cmacpeB717
Cp4.1LG14g03000	CmoCh04G006510	Cucurbita moschata (Rifu)	cmocpeB670
Cp4.1LG14g03000	Cla005447	Watermelon (97103) v1	cpewmB219
Cp4.1LG14g03000	Csa4G056730	Cucumber (Chinese Long) v2	cpecuB221
Cp4.1LG14g03000	MELO3C016231	Melon (DHL92) v3.5.1	cpemeB203
Cp4.1LG14g03000	ClCG07G010990	Watermelon (Charleston Gray)	cpewcgB209
Cp4.1LG14g03000	CSPI04G07050	Wild cucumber (PI 183967)	cpecpiB223
Cp4.1LG14g03000	Lsi07G007880	Bottle gourd (USVL1VR-Ls)	cpelsiB184
Cp4.1LG14g03000	MELO3C016231.2	Melon (DHL92) v3.6.1	cpemedB245
Cp4.1LG14g03000	CsaV3_4G007280	Cucumber (Chinese Long) v3	cpecucB0266
Cp4.1LG14g03000	Bhi01G002369	Wax gourd	cpewgoB0294
Cp4.1LG14g03000	CsGy4G006970	Cucumber (Gy14) v2	cgybcpeB487
Cp4.1LG14g03000	Carg11411	Silver-seed gourd	carcpeB0926
Cp4.1LG14g03000	Carg13137	Silver-seed gourd	carcpeB0057

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG14g03000	Cp4.1LG01g01160	Cucurbita pepo (Zucchini)	cpecpeB236

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g03000	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g03000	Melon (DHL92) v3.5.1	cpemeB196
Cp4.1LG14g03000	Melon (DHL92) v3.6.1	cpemedB239
Cp4.1LG14g03000	Silver-seed gourd	carcpeB0058