Csa4G056730 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G056730
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	VQ motif-containing protein; contains IPR008889 (VQ)
Location	Chr4 : 4862111 .. 4862837 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGCGATTGGCTTCAATTTTACCATCAAAATCTCTCTTCCACGGCGGCGCCACCACCTTCCGATCATTCCACCTCCGAAATGTTCTTCGTCGATCGAGTTTCTGACGCCACCGGGGTTATCACCACCACCGCCTCCGTCAACACGCTTGGTTCCACTGGATTGAACCCGGAAGGTCGTGTAGGAAAGCCGGTTCGTCGCCGGTCCAGGGCATCTCGGCGGACTCCGACCACGTTGCTCAACACGGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACTGGCGGTCCAACTCCACCTTTCACCTCATCCATTTCCCCCAATTTCTCCTTAGGGTTCGGCGGGATTCATCAATCCAATTTCCCCACTTCCCAGAACGCCACGATTTCTCCGCCGCCCTCTGGTTACCTATTACAACAACCACCACAGTTGTACAATCACAATCCTCAACAGTTCATGTTTCCGACAGTCGCACATGGCGGCGATTTTCTTCAGAGGCTATCCGCGCCAAGGCCGGCTAATGGCGCAGTTGCTGGAGACGGATTTCTGATCGAAAGTGCGGTTTCTTCTCAAATTCCTCCCGCTGGAGCTTCTGCAGATTCCTCCAACGAGAGCAATGGGGGTAATGGCCGCTTACTGTTCTGATGAGGAAGAAGGAAGTACACTGGCGGCGTGGGCGCCGATGCCGATGACTGAACCGGATAATTTTTGGGCTGTGTAG

mRNA sequence

ATGTCCGGCGATTGGCTTCAATTTTACCATCAAAATCTCTCTTCCACGGCGGCGCCACCACCTTCCGATCATTCCACCTCCGAAATGTTCTTCGTCGATCGAGTTTCTGACGCCACCGGGGTTATCACCACCACCGCCTCCGTCAACACGCTTGGTTCCACTGGATTGAACCCGGAAGGTCGTGTAGGAAAGCCGGTTCGTCGCCGGTCCAGGGCATCTCGGCGGACTCCGACCACGTTGCTCAACACGGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACTGGCGGTCCAACTCCACCTTTCACCTCATCCATTTCCCCCAATTTCTCCTTAGGGTTCGGCGGGATTCATCAATCCAATTTCCCCACTTCCCAGAACGCCACGATTTCTCCGCCGCCCTCTGGTTACCTATTACAACAACCACCACAGTTGTACAATCACAATCCTCAACAGTTCATGTTTCCGACAGTCGCACATGGCGGCGATTTTCTTCAGAGGCTATCCGCGCCAAGGCCGGCTAATGGCGCAGTTGCTGGAGACGGATTTCTGATCGAAAGTGCGATTCCTCCAACGAGAGCAATGGGGGTAATGGCCGCTTACTGTTCTGATGAGGAAGAAGGAAGTACACTGGCGGCGTGGGCGCCGATGCCGATGACTGAACCGGATAATTTTTGGGCTGTGTAG

Coding sequence (CDS)

ATGTCCGGCGATTGGCTTCAATTTTACCATCAAAATCTCTCTTCCACGGCGGCGCCACCACCTTCCGATCATTCCACCTCCGAAATGTTCTTCGTCGATCGAGTTTCTGACGCCACCGGGGTTATCACCACCACCGCCTCCGTCAACACGCTTGGTTCCACTGGATTGAACCCGGAAGGTCGTGTAGGAAAGCCGGTTCGTCGCCGGTCCAGGGCATCTCGGCGGACTCCGACCACGTTGCTCAACACGGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACTGGCGGTCCAACTCCACCTTTCACCTCATCCATTTCCCCCAATTTCTCCTTAGGGTTCGGCGGGATTCATCAATCCAATTTCCCCACTTCCCAGAACGCCACGATTTCTCCGCCGCCCTCTGGTTACCTATTACAACAACCACCACAGTTGTACAATCACAATCCTCAACAGTTCATGTTTCCGACAGTCGCACATGGCGGCGATTTTCTTCAGAGGCTATCCGCGCCAAGGCCGGCTAATGGCGCAGTTGCTGGAGACGGATTTCTGATCGAAAGTGCGATTCCTCCAACGAGAGCAATGGGGGTAATGGCCGCTTACTGTTCTGATGAGGAAGAAGGAAGTACACTGGCGGCGTGGGCGCCGATGCCGATGACTGAACCGGATAATTTTTGGGCTGTGTAG

Protein sequence

MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQSNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVAGDGFLIESAIPPTRAMGVMAAYCSDEEEGSTLAAWAPMPMTEPDNFWAV*

Homology

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BLAST of Csa4G056730 vs. Swiss-Prot
Match: VQ22_ARATH (VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-21
Identity = 67/155 (43.23%), Postives = 81/155 (52.26%), Query Frame = 1


Query: 4   DWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPE-GRV 63
           +W QFY+ N               + FF    + +T V TTTA   T   + L+PE GRV
Sbjct: 6   EWSQFYNNN---------------QTFFTTSTTASTAVTTTTAGDTTSIDSRLSPETGRV 65

Query: 64  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQSN 123
            KP RRRSRASRRTPTTLLNTDT+NFRAMVQQ+TGGP+           ++ FG     N
Sbjct: 66  TKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPS-----------AMAFG---SGN 125

Query: 124 FPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFP 158
             ++ + T S  PS    QQ P  YN  P   + P
Sbjct: 126 TTSAFSLTSSSDPSAGSSQQAPWQYNFQPHAPLQP 131

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BLAST of Csa4G056730 vs. TrEMBL
Match: A0A0A0KV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 7.1e-131
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1


Query: 1   MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEG 60
           MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEG
Sbjct: 1   MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEG 60

Query: 61  RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQ 120
           RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQ
Sbjct: 61  RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQ 120

Query: 121 SNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVA 180
           SNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVA
Sbjct: 121 SNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVA 180

Query: 181 GDGFLIESAIPPTRAMGVMAAYCSDEEEGSTLAAWAPMPMTEPDNFWAV 230
           GDGFLIESAIPPTRAMGVMAAYCSDEEEGSTLAAWAPMPMTEPDNFWAV
Sbjct: 181 GDGFLIESAIPPTRAMGVMAAYCSDEEEGSTLAAWAPMPMTEPDNFWAV 229

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BLAST of Csa4G056730 vs. TrEMBL
Match: A0A061DLC3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_002034 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 109/222 (49.10%), Postives = 127/222 (57.21%), Query Frame = 1


Query: 1   MSG--DWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNT-------- 60
           MSG  DW QFY QNLS   AP      +SE  F D+ SDAT V TT  S +         
Sbjct: 5   MSGPTDWAQFYQQNLSVQEAPNRGRVVSSESAFGDQGSDATVVTTTITSSSAPSPLASGP 64

Query: 61  LGSTG--LNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTS-SI 120
            GS+   L+PEGRV KP+RRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF   S 
Sbjct: 65  AGSSAGHLSPEGRVSKPLRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFPGHSG 124

Query: 121 SPNFSLGFGGIHQSNFPTSQNATISPPPSGYLL----QQPPQLYNHNPQQ---FMFPTVA 180
            PNF  GFGG      P     ++  PP G+ L    QQ PQ  +   QQ   +MF   +
Sbjct: 125 GPNFGFGFGG----RQPHVNPGSLMIPPGGFHLQYQQQQQPQQQHQFQQQNQPYMFSLSS 184

Query: 181 H----GGDFLQRLSA-PRPANGAVAGDGFLIESA---IPPTR 195
           +    G  FLQRL   PRP       DGF++E A   +PP+R
Sbjct: 185 NNPGAGDLFLQRLGGNPRP--NMEGSDGFVVEGASSQVPPSR 220

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BLAST of Csa4G056730 vs. TrEMBL
Match: B9HCD7_POPTR (VQ motif-containing family protein OS=Populus trichocarpa GN=POPTR_0006s00810g PE=4 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 4.9e-31
Identity = 98/234 (41.88%), Postives = 123/234 (52.56%), Query Frame = 1


Query: 4   DWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASV----NTLGSTG---- 63
           DW QFY QNLS+   PP          F DRV+D+T V TTT +     N +GS+     
Sbjct: 11  DWSQFYQQNLSNQVLPP------IRPMFRDRVADSTTVTTTTINTSGVPNPMGSSNSSSS 70

Query: 64  ----LNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSI---S 123
               L+PEGRV KP+R+RSRASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF S     +
Sbjct: 71  AGRHLSPEGRVAKPIRKRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFASGSQINA 130

Query: 124 PNFSLGFGGIHQSNFPTSQNATISPPPSGYLL------QQPPQLYNHNPQQFMF------ 183
            NF    G   Q++   +Q + +  PP+GY L      QQ  Q  + +P  +MF      
Sbjct: 131 TNFGFALGAYRQAHH-VNQPSPVMMPPAGYNLQYQQQQQQQFQQQSQHPSSYMFSLGNSN 190

Query: 184 -------PTVAHGGDFLQRLSAPR--------PANGAVAGDGFLIESAI-PPTR 195
                   T   G  F QRL  PR           G  + +G +I S + PP+R
Sbjct: 191 IGTSTTTTTTTPGDMFFQRLGNPRVPTTSMEVSDQGFGSTEGAVISSLVAPPSR 237

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BLAST of Csa4G056730 vs. TrEMBL
Match: A0A0D2TGR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G173300 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.1e-30
Identity = 100/220 (45.45%), Postives = 113/220 (51.36%), Query Frame = 1


Query: 4   DWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITT---TASVNTLGSTG----- 63
           DW QFY   LS+   P      TSE  F D+ SD T V+TT   T+S   L S G     
Sbjct: 6   DWPQFYDHALSNQEIPNRVRILTSESVFGDQGSD-TAVLTTPTVTSSSAPLSSLGSGLGG 65

Query: 64  ------LNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSI-- 123
                 L+PEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF      
Sbjct: 66  GSSGGHLSPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFAGGAPH 125

Query: 124 --SPNFSLGFGGIHQSNFPTSQNATISPPPSGYL-----LQQPPQLYNHNPQQFMFP--- 183
              PNF  GFG  HQ +     N  + PP   +L      Q   QL +H  Q  MF    
Sbjct: 126 HGGPNFGYGFGTRHQPHNSNPNNPLMLPPTGFHLQYQQQQQHQNQLIHHQNQPLMFSLNS 185

Query: 184 ---TVAHGGDFLQRLSAPRPANGAVAGDGFLIESAIPPTR 195
              + A G  F QRL       G V   G    S +P +R
Sbjct: 186 NDNSPAPGELFFQRLG----VGGGVNMQGSDASSQVPASR 220

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BLAST of Csa4G056730 vs. TrEMBL
Match: W9REZ9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009324 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-28
Identity = 91/187 (48.66%), Postives = 107/187 (57.22%), Query Frame = 1


Query: 4   DWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITT-TASVNTLGSTGLNPEGRV 63
           +W+QFY+QN S     P +  +T      DRVSDAT V    T S +      L+PEGRV
Sbjct: 10  EWMQFYNQNFSGQ---PQASTTTQPTILPDRVSDATAVTAAVTGSASPTVPNRLSPEGRV 69

Query: 64  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSIS-PNFS-LGFG-GIH 123
            KPVRRR+RASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF S  S P  S   FG G  
Sbjct: 70  SKPVRRRTRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFASVGSHPGASAFAFGLGAR 129

Query: 124 QSNFPTSQNATISPPPSG------YLLQQPPQLYNH--NPQQFMFPTVAHGG----DFLQ 175
           Q +F       +    +G      +L QQ   LY+H    QQ+MF     GG     F Q
Sbjct: 130 QGSFANPSAVMVPAAQAGNYHHTLHLHQQ--NLYHHQRQNQQYMFGGGGSGGAGNDSFFQ 189

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BLAST of Csa4G056730 vs. TAIR10
Match: AT3G22160.1 (AT3G22160.1 VQ motif-containing protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-22
Identity = 67/155 (43.23%), Postives = 81/155 (52.26%), Query Frame = 1


Query: 4   DWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPE-GRV 63
           +W QFY+ N               + FF    + +T V TTTA   T   + L+PE GRV
Sbjct: 6   EWSQFYNNN---------------QTFFTTSTTASTAVTTTTAGDTTSIDSRLSPETGRV 65

Query: 64  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQSN 123
            KP RRRSRASRRTPTTLLNTDT+NFRAMVQQ+TGGP+           ++ FG     N
Sbjct: 66  TKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPS-----------AMAFG---SGN 125

Query: 124 FPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFP 158
             ++ + T S  PS    QQ P  YN  P   + P
Sbjct: 126 TTSAFSLTSSSDPSAGSSQQAPWQYNFQPHAPLQP 131

[Close]

BLAST of Csa4G056730 vs. TAIR10
Match: AT4G15120.1 (AT4G15120.1 VQ motif-containing protein)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 78/186 (41.94%), Postives = 95/186 (51.08%), Query Frame = 1


Query: 2   SGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGR 61
           + DW QFY+                ++ FF    + AT  +TTT +  T   + L+P+ R
Sbjct: 5   NNDWSQFYN----------------NQTFF----TTATSTVTTTTTTATSADSPLSPDNR 64

Query: 62  -VGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFTSSISPNFSLGFGGIH 121
            V KP RRRSRASRRTPTTL NTDT NFRAMVQQFTGGP+   F SS S  FSL      
Sbjct: 65  RVAKPTRRRSRASRRTPTTLFNTDTANFRAMVQQFTGGPSAVAFGSSPSSGFSL------ 124

Query: 122 QSNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAV 181
            S+ PT   A +S  P  Y   Q    +N   QQ   P +    + +  LS P     AV
Sbjct: 125 TSSDPT---AGVSSSPWQYANLQNQMAHNELMQQ-QRPYMFSSSNNVSTLSYP----NAV 156

Query: 182 AGDGFL 186
           A DGF+
Sbjct: 185 ATDGFV 156

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BLAST of Csa4G056730 vs. TAIR10
Match: AT4G39720.1 (AT4G39720.1 VQ motif-containing protein)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 67/202 (33.17%), Postives = 87/202 (43.07%), Query Frame = 1


Query: 6   LQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGRVG-- 65
           L F H N +S    PP+  + +    V++  D    +    S  T   + L P   +G  
Sbjct: 57  LHFDHNNNNSLI--PPNYFNNNTFLPVNQQPDPISQLDLRTSSAT---SSLPPTNNIGVI 116

Query: 66  KPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSIS------PNFSLGFGG 125
           K  ++RSRASRR PTT+L TDT+NFRAMVQ+FTG P PP  ++ S       N  LG   
Sbjct: 117 KKTKKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPLFNNNSIVNTTRLNTFLGLSS 176

Query: 126 IHQSNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRL-----SAP 185
              + + T  N  +  P +  L    P L     QQ+  P        LQ L     S P
Sbjct: 177 SSPNTYNT--NNLLLRPFAQKLTPATPLLSGSQIQQYQNPNNGFEDMNLQALLQAHISNP 236

Query: 186 RPANGAVAGDGFL-IESAIPPT 194
           R       G G +   S  PPT
Sbjct: 237 RSNEHDQFGLGMMQTPSTNPPT 251

[Close]

BLAST of Csa4G056730 vs. TAIR10
Match: AT5G65170.1 (AT5G65170.1 VQ motif-containing protein)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 50/146 (34.25%), Postives = 72/146 (49.32%), Query Frame = 1


Query: 15  STAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGRVG--KPVRRRSRA 74
           S   PPP   S+ ++FF + +      +  T + + + S   + +  +   +  ++RSR 
Sbjct: 88  SRPVPPPI--SSEQVFFTNPLQQNLRTVPNTNTTSPICSVPTDKKNGLATTRNPKKRSRV 147

Query: 75  SRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFT--SSISP--NFSLGFGGIHQSNFPTS-- 134
           SRR PTT+L TDT+NFRAMVQ+FTG P+ PFT  SS  P   F L       S+ P    
Sbjct: 148 SRRAPTTVLTTDTSNFRAMVQEFTGNPSTPFTGLSSSFPRSRFDLFGSSSSSSSRPMKPF 207

Query: 135 QNATISPPPSGYLLQQPPQLYNHNPQ 153
            +  ISP    +    P   Y+H+ Q
Sbjct: 208 PHKLISPSTLNHHYLPPSSEYHHHHQ 231

[Close]

BLAST of Csa4G056730 vs. TAIR10
Match: AT1G35830.1 (AT1G35830.1 VQ motif-containing protein)

HSP 1 Score: 61.6 bits (148), Expect = 7.2e-10
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1


Query: 67  RRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSIS 109
           R+R+RASRR PTT+L TDT+NFRAMVQ+FTG P  PF+   S
Sbjct: 100 RKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPFSHPFS 141

[Close]

BLAST of Csa4G056730 vs. NCBI nr
Match: gi|700198327|gb|KGN53485.1| (hypothetical protein Csa_4G056730 [Cucumis sativus])

HSP 1 Score: 474.6 bits (1220), Expect = 1.0e-130
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1


Query: 1   MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEG 60
           MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEG
Sbjct: 1   MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEG 60

Query: 61  RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQ 120
           RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQ
Sbjct: 61  RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQ 120

Query: 121 SNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVA 180
           SNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVA
Sbjct: 121 SNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVA 180

Query: 181 GDGFLIESAIPPTRAMGVMAAYCSDEEEGSTLAAWAPMPMTEPDNFWAV 230
           GDGFLIESAIPPTRAMGVMAAYCSDEEEGSTLAAWAPMPMTEPDNFWAV
Sbjct: 181 GDGFLIESAIPPTRAMGVMAAYCSDEEEGSTLAAWAPMPMTEPDNFWAV 229

[Close]

BLAST of Csa4G056730 vs. NCBI nr
Match: gi|778691256|ref|XP_011653250.1| (PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus])

HSP 1 Score: 392.1 bits (1006), Expect = 6.6e-106
Identity = 193/209 (92.34%), Postives = 196/209 (93.78%), Query Frame = 1


Query: 1   MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEG 60
           MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEG
Sbjct: 1   MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEG 60

Query: 61  RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQ 120
           RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQ
Sbjct: 61  RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQ 120

Query: 121 SNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVA 180
           SNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVA
Sbjct: 121 SNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVA 180

Query: 181 GDGFLIESAIPPTRAMGVMAAYCSDEEEG 210
           GDGFLIESA+         +A  S+E  G
Sbjct: 181 GDGFLIESAVSSQIPPAGASADSSNESNG 209

[Close]

BLAST of Csa4G056730 vs. NCBI nr
Match: gi|659101968|ref|XP_008451884.1| (PREDICTED: uncharacterized protein LOC103493042 [Cucumis melo])

HSP 1 Score: 350.9 bits (899), Expect = 1.7e-93
Identity = 176/209 (84.21%), Postives = 180/209 (86.12%), Query Frame = 1


Query: 1   MSGDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEG 60
           MSGDWLQFYHQNLSSTA PPPS HSTSEM F DRVSDAT      AS NTLGSTGLNPEG
Sbjct: 1   MSGDWLQFYHQNLSSTAPPPPSHHSTSEMIFADRVSDAT------ASANTLGSTGLNPEG 60

Query: 61  RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQ 120
           RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGI Q
Sbjct: 61  RVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIRQ 120

Query: 121 SNFPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVA 180
           SNF TSQNA ISPPPSGYLLQQPPQLYNHNPQ F+FPTVAHGGDFLQRLSAPRPANG VA
Sbjct: 121 SNFSTSQNAAISPPPSGYLLQQPPQLYNHNPQPFVFPTVAHGGDFLQRLSAPRPANGGVA 180

Query: 181 GDGFLIESAIPPTRAMGVMAAYCSDEEEG 210
           GDGFLIESA+         +A  S+E  G
Sbjct: 181 GDGFLIESAVSSQIPPAGASADSSNESNG 203

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BLAST of Csa4G056730 vs. NCBI nr
Match: gi|590711222|ref|XP_007049045.1| (Uncharacterized protein TCM_002034 [Theobroma cacao])

HSP 1 Score: 153.3 bits (386), Expect = 5.2e-34
Identity = 109/222 (49.10%), Postives = 127/222 (57.21%), Query Frame = 1


Query: 1   MSG--DWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNT-------- 60
           MSG  DW QFY QNLS   AP      +SE  F D+ SDAT V TT  S +         
Sbjct: 5   MSGPTDWAQFYQQNLSVQEAPNRGRVVSSESAFGDQGSDATVVTTTITSSSAPSPLASGP 64

Query: 61  LGSTG--LNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTS-SI 120
            GS+   L+PEGRV KP+RRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF   S 
Sbjct: 65  AGSSAGHLSPEGRVSKPLRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFPGHSG 124

Query: 121 SPNFSLGFGGIHQSNFPTSQNATISPPPSGYLL----QQPPQLYNHNPQQ---FMFPTVA 180
            PNF  GFGG      P     ++  PP G+ L    QQ PQ  +   QQ   +MF   +
Sbjct: 125 GPNFGFGFGG----RQPHVNPGSLMIPPGGFHLQYQQQQQPQQQHQFQQQNQPYMFSLSS 184

Query: 181 H----GGDFLQRLSA-PRPANGAVAGDGFLIESA---IPPTR 195
           +    G  FLQRL   PRP       DGF++E A   +PP+R
Sbjct: 185 NNPGAGDLFLQRLGGNPRP--NMEGSDGFVVEGASSQVPPSR 220

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BLAST of Csa4G056730 vs. NCBI nr
Match: gi|743916799|ref|XP_011002377.1| (PREDICTED: mental retardation GTPase activating protein homolog 4 [Populus euphratica])

HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 98/230 (42.61%), Postives = 119/230 (51.74%), Query Frame = 1


Query: 4   DWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASV----NTLGSTG---- 63
           DW QFY QNLS+   PP          F DRV+D+T V TTT +     N +GS+     
Sbjct: 11  DWSQFYQQNLSNQVLPP------IRPMFRDRVADSTTVTTTTINTSSVPNPMGSSNSSSS 70

Query: 64  ----LNPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSI---S 123
               L+PEGRV KP+R+RSRASRRTPTTLLNTDT NFRAMVQQFTGGP+ PF S     +
Sbjct: 71  AGSHLSPEGRVAKPIRKRSRASRRTPTTLLNTDTANFRAMVQQFTGGPSAPFASGSQINA 130

Query: 124 PNFSLGFGGIHQSNFPTSQNATISPPPSGYLL-----QQPPQLYNHNPQQFMF------- 183
            NF    G   Q++   +Q +    PP+GY L     QQ  Q    +P  +MF       
Sbjct: 131 TNFGFALGAYRQAHH-VNQPSPAMMPPAGYNLQYQQQQQQFQQQGQHPSSYMFSLSNSNI 190

Query: 184 ----PTVAHGGDFLQRLSAPRPANGAVAGD-------GFLIESAI-PPTR 195
                T   G  F QRL  PRP       D       G +I S + PP+R
Sbjct: 191 GTSTTTTTPGDMFFQRLGNPRPTTSMEVSDHGFGTTEGAVISSLVAPPSR 233

The following BLAST results are available for this feature:

BLAST of Csa4G056730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ22_ARATH	2.3e-21	43.23	VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1	[more]

BLAST of Csa4G056730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV74_CUCSA	7.1e-131	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1	[more]
A0A061DLC3_THECC	3.6e-34	49.10	Uncharacterized protein OS=Theobroma cacao GN=TCM_002034 PE=4 SV=1	[more]
B9HCD7_POPTR	4.9e-31	41.88	VQ motif-containing family protein OS=Populus trichocarpa GN=POPTR_0006s00810g P...	[more]
A0A0D2TGR0_GOSRA	4.1e-30	45.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G173300 PE=4 SV=1	[more]
W9REZ9_9ROSA	2.3e-28	48.66	Uncharacterized protein OS=Morus notabilis GN=L484_009324 PE=4 SV=1	[more]

BLAST of Csa4G056730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22160.1	1.3e-22	43.23	VQ motif-containing protein	[more]
AT4G15120.1	1.1e-21	41.94	VQ motif-containing protein	[more]
AT4G39720.1	1.2e-12	33.17	VQ motif-containing protein	[more]
AT5G65170.1	1.2e-12	34.25	VQ motif-containing protein	[more]
AT1G35830.1	7.2e-10	66.67	VQ motif-containing protein	[more]

BLAST of Csa4G056730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198327\|gb\|KGN53485.1\|	1.0e-130	100.00	hypothetical protein Csa_4G056730 [Cucumis sativus]	[more]
gi\|778691256\|ref\|XP_011653250.1\|	6.6e-106	92.34	PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus]	[more]
gi\|659101968\|ref\|XP_008451884.1\|	1.7e-93	84.21	PREDICTED: uncharacterized protein LOC103493042 [Cucumis melo]	[more]
gi\|590711222\|ref\|XP_007049045.1\|	5.2e-34	49.10	Uncharacterized protein TCM_002034 [Theobroma cacao]	[more]
gi\|743916799\|ref\|XP_011002377.1\|	1.8e-31	42.61	PREDICTED: mental retardation GTPase activating protein homolog 4 [Populus euphr...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G056730.1	Csa4G056730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 75..102 score: 5.4
None	No IPR available	PANTHER	PTHR33179	FAMILY NOT NAMED	coord: 2..156 score: 1.4
None	No IPR available	PANTHER	PTHR33179:SF7	GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MKA23	coord: 2..156 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G056730	Cla005447	Watermelon (97103) v1	cuwmB311
Csa4G056730	MELO3C016231	Melon (DHL92) v3.5.1	cumeB300
Csa4G056730	ClCG07G010990	Watermelon (Charleston Gray)	cuwcgB324
Csa4G056730	Lsi07G007880	Bottle gourd (USVL1VR-Ls)	culsiB304
Csa4G056730	Lsi04G019250	Bottle gourd (USVL1VR-Ls)	culsiB296
Csa4G056730	MELO3C016231.2	Melon (DHL92) v3.6.1	cumedB284
Csa4G056730	Cla97C07G137730	Watermelon (97103) v2	cuwmbB321
Csa4G056730	Bhi01G002369	Wax gourd	cuwgoB365
Csa4G056730	CSPI04G07050	Wild cucumber (PI 183967)	cpicuB182
Csa4G056730	CSPI04G22010	Wild cucumber (PI 183967)	cpicuB189
Csa4G056730	Cucsa.180120	Cucumber (Gy14) v1	cgycuB275
Csa4G056730	CmaCh16G004950	Cucurbita maxima (Rimu)	cmacuB337
Csa4G056730	CmaCh04G006070	Cucurbita maxima (Rimu)	cmacuB708
Csa4G056730	Cp4.1LG01g01160	Cucurbita pepo (Zucchini)	cpecuB399
Csa4G056730	Cp4.1LG14g03000	Cucurbita pepo (Zucchini)	cpecuB221
Csa4G056730	CsGy4G006970	Cucumber (Gy14) v2	cgybcuB165
Csa4G056730	CsGy4G020530	Cucumber (Gy14) v2	cgybcuB175
Csa4G056730	Carg13137	Silver-seed gourd	carcuB0047
Csa4G056730	Carg11411	Silver-seed gourd	carcuB0677

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Csa4G056730	Csa4G618460	Cucumber (Chinese Long) v2	cucuB136

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G056730	Cucurbita moschata (Rifu)	cmocuB325
Csa4G056730	Cucurbita moschata (Rifu)	cmocuB699