CmaCh16G004950 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G004950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	VQ motif-containing family protein
Location	Cma_Chr16 : 2533970 .. 2534581 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTCCTACCACGGCGGCGCCACCGCCTTCCGATCAATCCACCTCCGAGATGATCTTCGTCGATCGAGTTTCCGACGCCATCGCCTCCGCAAACACCGGCGCTTCCACTGGCTTGAATCCGGAACGTCGTGTAGCAAAGCCGGTTCGCCGCCGGTCCAGGACTTCTCGGCGGACTCCGACGACCTTGCTCAATACAGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACCGGCGGTCCAACTCCGCCTTTCGCCTCATCGATTTCCCCCAATTTTTCGTTAGGGTTCGGCGCGATTCCTCAATCGAATTCCGGCTTGATTTCTCCGCCGTCTGGTTATCCGCTGCAGTTTTACCATCACAACCCCCAACCGTTCGTGATTCCAGCATCCGCACACGGCGGCGAATTTCTTCAGAGGCTATCCGCCGCGAAGCCAGGAAATGGCGGAGTCGCCGCAGACGGATTTCTGATGGAAAGTGCAGTTTCTTCTCAAATTCCTCCCGCCGGAGCTTCTGCAGATTCCTCCAACAAAAGCAACGGCGGTAGTGGCGGCGGATTTCTGTTCTGA

mRNA sequence

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTCCTACCACGGCGGCGCCACCGCCTTCCGATCAATCCACCTCCGAGATGATCTTCGTCGATCGAGTTTCCGACGCCATCGCCTCCGCAAACACCGGCGCTTCCACTGGCTTGAATCCGGAACGTCGTGTAGCAAAGCCGGTTCGCCGCCGGTCCAGGACTTCTCGGCGGACTCCGACGACCTTGCTCAATACAGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACCGGCGGTCCAACTCCGCCTTTCGCCTCATCGATTTCCCCCAATTTTTCGTTAGGGTTCGGCGCGATTCCTCAATCGAATTCCGGCTTGATTTCTCCGCCGTCTGGTTATCCGCTGCAGTTTTACCATCACAACCCCCAACCGTTCGTGATTCCAGCATCCGCACACGGCGGCGAATTTCTTCAGAGGCTATCCGCCGCGAAGCCAGGAAATGGCGGAGTCGCCGCAGACGGATTTCTGATGGAAAGTGCAGTTTCTTCTCAAATTCCTCCCGCCGGAGCTTCTGCAGATTCCTCCAACAAAAGCAACGGCGGTAGTGGCGGCGGATTTCTGTTCTGA

Coding sequence (CDS)

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTCCTACCACGGCGGCGCCACCGCCTTCCGATCAATCCACCTCCGAGATGATCTTCGTCGATCGAGTTTCCGACGCCATCGCCTCCGCAAACACCGGCGCTTCCACTGGCTTGAATCCGGAACGTCGTGTAGCAAAGCCGGTTCGCCGCCGGTCCAGGACTTCTCGGCGGACTCCGACGACCTTGCTCAATACAGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACCGGCGGTCCAACTCCGCCTTTCGCCTCATCGATTTCCCCCAATTTTTCGTTAGGGTTCGGCGCGATTCCTCAATCGAATTCCGGCTTGATTTCTCCGCCGTCTGGTTATCCGCTGCAGTTTTACCATCACAACCCCCAACCGTTCGTGATTCCAGCATCCGCACACGGCGGCGAATTTCTTCAGAGGCTATCCGCCGCGAAGCCAGGAAATGGCGGAGTCGCCGCAGACGGATTTCTGATGGAAAGTGCAGTTTCTTCTCAAATTCCTCCCGCCGGAGCTTCTGCAGATTCCTCCAACAAAAGCAACGGCGGTAGTGGCGGCGGATTTCTGTTCTGA

Protein sequence

MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQSNSGLISPPSGYPLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAADGFLMESAVSSQIPPAGASADSSNKSNGGSGGGFLF

Homology

[Close]

BLAST of CmaCh16G004950 vs. Swiss-Prot
Match: VQ22_ARATH (VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.1e-15
Identity = 61/140 (43.57%), Postives = 78/140 (55.71%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPER-RVA 60
           M+ P +W QFY+ N   T     +  ST+       V+   A   T   + L+PE  RV 
Sbjct: 1   MANPNEWSQFYNNN--QTFFTTSTTASTA-------VTTTTAGDTTSIDSRLSPETGRVT 60

Query: 61  KPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFAS-SISPNFSLGFGAIPQS 120
           KP RRRSR SRRTPTTLLNTDT+NFRAMVQQ+TGGP+   F S + +  FSL   + P +
Sbjct: 61  KPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSSDPSA 120

Query: 121 NSGLISPPSGYPLQFYHHNP 138
            S   +P   +   F  H P
Sbjct: 121 GSSQQAP---WQYNFQPHAP 128

[Close]

BLAST of CmaCh16G004950 vs. TrEMBL
Match: A0A0A0KV74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 7.8e-65
Identity = 141/197 (71.57%), Postives = 149/197 (75.63%), Query Frame = 1


Query: 5   GDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAI------ASANTGASTGLNPERRV 64
           GDWLQFYHQNL +TAAPPPSD STSEM FVDRVSDA       AS NT  STGLNPE RV
Sbjct: 3   GDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGRV 62

Query: 65  AKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQS- 124
            KPVRRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFG I QS 
Sbjct: 63  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQSN 122

Query: 125 -----NSGLISPPSGY----PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAAD 184
                N+ +  PPSGY    P Q Y+HNPQ F+ P  AHGG+FLQRLSA +P NG VA D
Sbjct: 123 FPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVAGD 182

Query: 185 GFLMESAVSSQIPPAGA 186
           GFL+ESA    IPP  A
Sbjct: 183 GFLIESA----IPPTRA 195

[Close]

BLAST of CmaCh16G004950 vs. TrEMBL
Match: A0A061DLC3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_002034 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.5e-33
Identity = 106/228 (46.49%), Postives = 130/228 (57.02%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDA---------------IASAN 60
           MSGP DW QFY QNL    AP      +SE  F D+ SDA               +AS  
Sbjct: 5   MSGPTDWAQFYQQNLSVQEAPNRGRVVSSESAFGDQGSDATVVTTTITSSSAPSPLASGP 64

Query: 61  TGASTG-LNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF-ASSI 120
            G+S G L+PE RV+KP+RRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF   S 
Sbjct: 65  AGSSAGHLSPEGRVSKPLRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFPGHSG 124

Query: 121 SPNFSLGFGA-IPQSNSG-LISPPSGYPLQF-----------YHHNPQPFVIPASAH--- 180
            PNF  GFG   P  N G L+ PP G+ LQ+           +    QP++   S++   
Sbjct: 125 GPNFGFGFGGRQPHVNPGSLMIPPGGFHLQYQQQQQPQQQHQFQQQNQPYMFSLSSNNPG 184

Query: 181 -GGEFLQRLSAAKPGNGGVAADGFLMESAVSSQIPPAGASADSSNKSN 195
            G  FLQRL    P      +DGF++E A SSQ+PP+   + + N+SN
Sbjct: 185 AGDLFLQRL-GGNPRPNMEGSDGFVVEGA-SSQVPPSRTPSSNENRSN 230

[Close]

BLAST of CmaCh16G004950 vs. TrEMBL
Match: A0A0D2TGR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G173300 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 101/235 (42.98%), Postives = 117/235 (49.79%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSD-----------------AIAS 60
           MS P DW QFY   L     P      TSE +F D+ SD                 ++ S
Sbjct: 1   MSTPTDWPQFYDHALSNQEIPNRVRILTSESVFGDQGSDTAVLTTPTVTSSSAPLSSLGS 60

Query: 61  ANTGASTG--LNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFAS 120
              G S+G  L+PE RV KPVRRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PFA 
Sbjct: 61  GLGGGSSGGHLSPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFAG 120

Query: 121 SI----SPNFSLGFGAIPQ-----SNSGLISPPSGYPLQF----------YHHNPQPFVI 180
                  PNF  GFG   Q      N+ L+ PP+G+ LQ+           HH  QP + 
Sbjct: 121 GAPHHGGPNFGYGFGTRHQPHNSNPNNPLMLPPTGFHLQYQQQQQHQNQLIHHQNQPLMF 180

Query: 181 P------ASAHGGEFLQRLSAAKPGNGGVAADGFLMESAVSSQIPPAGASADSSN 192
                  + A G  F QRL       GGV   G    S  SSQ+P +  S  SSN
Sbjct: 181 SLNSNDNSPAPGELFFQRLGV----GGGVNMQG----SDASSQVPASRTSTSSSN 227

[Close]

BLAST of CmaCh16G004950 vs. TrEMBL
Match: W9REZ9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009324 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 99/239 (41.42%), Postives = 125/239 (52.30%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIA--SANTGASTG-----LN 60
           MS P +W+QFY+QN    +  P +  +T   I  DRVSDA A  +A TG+++      L+
Sbjct: 5   MSNPTEWMQFYNQNF---SGQPQASTTTQPTILPDRVSDATAVTAAVTGSASPTVPNRLS 64

Query: 61  PERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSIS----PNFSL 120
           PE RV+KPVRRR+R SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PFAS  S      F+ 
Sbjct: 65  PEGRVSKPVRRRTRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFASVGSHPGASAFAF 124

Query: 121 GFGAIPQS--NSGLISPPSG-----------YPLQFYHH--NPQPFVIPASAHGG----E 180
           G GA   S  N   +  P+            +    YHH    Q ++      GG     
Sbjct: 125 GLGARQGSFANPSAVMVPAAQAGNYHHTLHLHQQNLYHHQRQNQQYMFGGGGSGGAGNDS 184

Query: 181 FLQRLSAAKP--GNGGV----AADGFLMESAVSSQIPPAGASADSSNKSNGGSGGGFLF 204
           F QRLS+ +P   N GV      +GFL      +  P A  +  SSN  N      FL+
Sbjct: 185 FFQRLSSGRPVVSNMGVGNINTTEGFLNTVGSQAVAPAAATARPSSNSPNEDRSNSFLY 240

[Close]

BLAST of CmaCh16G004950 vs. TrEMBL
Match: B9HCD7_POPTR (VQ motif-containing family protein OS=Populus trichocarpa GN=POPTR_0006s00810g PE=4 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 6.0e-25
Identity = 76/157 (48.41%), Postives = 93/157 (59.24%), Query Frame = 1


Query: 4   PGDWLQFYHQNLPTTAAPP----------PSDQSTSEMIFVDRVSDAIASANTGASTG-- 63
           P DW QFY QNL     PP           S   T+  I    V + + S+N+ +S G  
Sbjct: 9   PTDWSQFYQQNLSNQVLPPIRPMFRDRVADSTTVTTTTINTSGVPNPMGSSNSSSSAGRH 68

Query: 64  LNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSI---SPNFS 123
           L+PE RVAKP+R+RSR SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PFAS     + NF 
Sbjct: 69  LSPEGRVAKPIRKRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFASGSQINATNFG 128

Query: 124 LGFGAIPQSN-----SGLISPPSGYPLQFYHHNPQPF 141
              GA  Q++     S ++ PP+GY LQ+     Q F
Sbjct: 129 FALGAYRQAHHVNQPSPVMMPPAGYNLQYQQQQQQQF 165

[Close]

BLAST of CmaCh16G004950 vs. TAIR10
Match: AT4G15120.1 (AT4G15120.1 VQ motif-containing protein)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 78/202 (38.61%), Postives = 94/202 (46.53%), Query Frame = 1


Query: 6   DWLQFYH-QNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPE-RRVAKPVR 65
           DW QFY+ Q   TTA    +  +T+                T A + L+P+ RRVAKP R
Sbjct: 7   DWSQFYNNQTFFTTATSTVTTTTTTA---------------TSADSPLSPDNRRVAKPTR 66

Query: 66  RRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFASSISPNFSLGFGAIPQSNSGLI 125
           RRSR SRRTPTTL NTDT NFRAMVQQFTGGP+   F SS S  FSL         +G+ 
Sbjct: 67  RRSRASRRTPTTLFNTDTANFRAMVQQFTGGPSAVAFGSSPSSGFSL---TSSDPTAGVS 126

Query: 126 SPPSGY---PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAADGFLMESAVSSQ 185
           S P  Y     Q  H+       P        +  LS        VA DGF+        
Sbjct: 127 SSPWQYANLQNQMAHNELMQQQRPYMFSSSNNVSTLSYP----NAVATDGFV-------- 172

Query: 186 IPPAGASADSSNKSNGGSGGGF 202
                  A+ S +  GG GGG+
Sbjct: 187 ------GAEESREGGGGGGGGY 172

[Close]

BLAST of CmaCh16G004950 vs. TAIR10
Match: AT3G22160.1 (AT3G22160.1 VQ motif-containing protein)

HSP 1 Score: 82.0 bits (201), Expect = 4.6e-16
Identity = 61/140 (43.57%), Postives = 78/140 (55.71%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPER-RVA 60
           M+ P +W QFY+ N   T     +  ST+       V+   A   T   + L+PE  RV 
Sbjct: 1   MANPNEWSQFYNNN--QTFFTTSTTASTA-------VTTTTAGDTTSIDSRLSPETGRVT 60

Query: 61  KPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFAS-SISPNFSLGFGAIPQS 120
           KP RRRSR SRRTPTTLLNTDT+NFRAMVQQ+TGGP+   F S + +  FSL   + P +
Sbjct: 61  KPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSSDPSA 120

Query: 121 NSGLISPPSGYPLQFYHHNP 138
            S   +P   +   F  H P
Sbjct: 121 GSSQQAP---WQYNFQPHAP 128

[Close]

BLAST of CmaCh16G004950 vs. TAIR10
Match: AT4G39720.1 (AT4G39720.1 VQ motif-containing protein)

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-10
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1


Query: 8   LQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASAN---TGASTGLNPERRVA--KPV 67
           L F H N    +  PP+  + +  + V++  D I+  +   + A++ L P   +   K  
Sbjct: 57  LHFDHNN--NNSLIPPNYFNNNTFLPVNQQPDPISQLDLRTSSATSSLPPTNNIGVIKKT 116

Query: 68  RRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSIS 105
           ++RSR SRR PTT+L TDT+NFRAMVQ+FTG P PP  ++ S
Sbjct: 117 KKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPLFNNNS 156

[Close]

BLAST of CmaCh16G004950 vs. TAIR10
Match: AT5G65170.1 (AT5G65170.1 VQ motif-containing protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-08
Identity = 55/153 (35.95%), Postives = 70/153 (45.75%), Query Frame = 1


Query: 16  PTTAAPPPSDQSTSEMIFVDR-------------VSDAIASANTGASTGLNPERRVAKPV 75
           PT  + P     +SE +F                 +  I S  T    GL   R   K  
Sbjct: 84  PTDGSRPVPPPISSEQVFFTNPLQQNLRTVPNTNTTSPICSVPTDKKNGLATTRNPKK-- 143

Query: 76  RRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLG----FGAIPQSN 135
             RSR SRR PTT+L TDT+NFRAMVQ+FTG P+ PF + +S +F       FG+   S+
Sbjct: 144 --RSRVSRRAPTTVLTTDTSNFRAMVQEFTGNPSTPF-TGLSSSFPRSRFDLFGSSSSSS 203

Query: 136 S--------GLISPPS---GY--PLQFYHHNPQ 139
           S         LISP +    Y  P   YHH+ Q
Sbjct: 204 SRPMKPFPHKLISPSTLNHHYLPPSSEYHHHHQ 231

[Close]

BLAST of CmaCh16G004950 vs. TAIR10
Match: AT1G35830.1 (AT1G35830.1 VQ motif-containing protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-08
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 1


Query: 63  RRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFA---SSISPNFSL---------- 122
           R+R+R SRR PTT+L TDT+NFRAMVQ+FTG P  PF+   SS +  F +          
Sbjct: 100 RKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPFSHPFSSTTRRFDIFRSPSDPLTY 159

Query: 123 -GFGAIPQSNSGLISPPSGYPLQFYHHNPQPFVIP 144
             F  IPQ     ++P +   L  +HH       P
Sbjct: 160 NPFRPIPQKP---LNPSTSSLLNLHHHTTTSMTFP 191

[Close]

BLAST of CmaCh16G004950 vs. NCBI nr
Match: gi|659101968|ref|XP_008451884.1| (PREDICTED: uncharacterized protein LOC103493042 [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.8e-78
Identity = 160/204 (78.43%), Postives = 169/204 (82.84%), Query Frame = 1


Query: 5   GDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPERRVAKPVRR 64
           GDWLQFYHQNL +TA PPPS  STSEMIF DRVSDA ASANT  STGLNPE RV KPVRR
Sbjct: 3   GDWLQFYHQNLSSTAPPPPSHHSTSEMIFADRVSDATASANTLGSTGLNPEGRVGKPVRR 62

Query: 65  RSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQS------N 124
           RSR SRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFG I QS      N
Sbjct: 63  RSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIRQSNFSTSQN 122

Query: 125 SGLISPPSGY----PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAADGFLMES 184
           + +  PPSGY    P Q Y+HNPQPFV P  AHGG+FLQRLSA +P NGGVA DGFL+ES
Sbjct: 123 AAISPPPSGYLLQQPPQLYNHNPQPFVFPTVAHGGDFLQRLSAPRPANGGVAGDGFLIES 182

Query: 185 AVSSQIPPAGASADSSNKSNGGSG 199
           AVSSQIPPAGASADSSN+SNGG+G
Sbjct: 183 AVSSQIPPAGASADSSNESNGGNG 206

[Close]

BLAST of CmaCh16G004950 vs. NCBI nr
Match: gi|778691256|ref|XP_011653250.1| (PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 3.1e-75
Identity = 158/210 (75.24%), Postives = 168/210 (80.00%), Query Frame = 1


Query: 5   GDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAI------ASANTGASTGLNPERRV 64
           GDWLQFYHQNL +TAAPPPSD STSEM FVDRVSDA       AS NT  STGLNPE RV
Sbjct: 3   GDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGRV 62

Query: 65  AKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQS- 124
            KPVRRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFG I QS 
Sbjct: 63  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQSN 122

Query: 125 -----NSGLISPPSGY----PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAAD 184
                N+ +  PPSGY    P Q Y+HNPQ F+ P  AHGG+FLQRLSA +P NG VA D
Sbjct: 123 FPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVAGD 182

Query: 185 GFLMESAVSSQIPPAGASADSSNKSNGGSG 199
           GFL+ESAVSSQIPPAGASADSSN+SNGG+G
Sbjct: 183 GFLIESAVSSQIPPAGASADSSNESNGGNG 212

[Close]

BLAST of CmaCh16G004950 vs. NCBI nr
Match: gi|700198327|gb|KGN53485.1| (hypothetical protein Csa_4G056730 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 1.1e-64
Identity = 141/197 (71.57%), Postives = 149/197 (75.63%), Query Frame = 1


Query: 5   GDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAI------ASANTGASTGLNPERRV 64
           GDWLQFYHQNL +TAAPPPSD STSEM FVDRVSDA       AS NT  STGLNPE RV
Sbjct: 3   GDWLQFYHQNLSSTAAPPPSDHSTSEMFFVDRVSDATGVITTTASVNTLGSTGLNPEGRV 62

Query: 65  AKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQS- 124
            KPVRRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF SSISPNFSLGFG I QS 
Sbjct: 63  GKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFTSSISPNFSLGFGGIHQSN 122

Query: 125 -----NSGLISPPSGY----PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAAD 184
                N+ +  PPSGY    P Q Y+HNPQ F+ P  AHGG+FLQRLSA +P NG VA D
Sbjct: 123 FPTSQNATISPPPSGYLLQQPPQLYNHNPQQFMFPTVAHGGDFLQRLSAPRPANGAVAGD 182

Query: 185 GFLMESAVSSQIPPAGA 186
           GFL+ESA    IPP  A
Sbjct: 183 GFLIESA----IPPTRA 195

[Close]

BLAST of CmaCh16G004950 vs. NCBI nr
Match: gi|590711222|ref|XP_007049045.1| (Uncharacterized protein TCM_002034 [Theobroma cacao])

HSP 1 Score: 149.8 bits (377), Expect = 5.0e-33
Identity = 106/228 (46.49%), Postives = 130/228 (57.02%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDA---------------IASAN 60
           MSGP DW QFY QNL    AP      +SE  F D+ SDA               +AS  
Sbjct: 5   MSGPTDWAQFYQQNLSVQEAPNRGRVVSSESAFGDQGSDATVVTTTITSSSAPSPLASGP 64

Query: 61  TGASTG-LNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPF-ASSI 120
            G+S G L+PE RV+KP+RRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PF   S 
Sbjct: 65  AGSSAGHLSPEGRVSKPLRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFPGHSG 124

Query: 121 SPNFSLGFGA-IPQSNSG-LISPPSGYPLQF-----------YHHNPQPFVIPASAH--- 180
            PNF  GFG   P  N G L+ PP G+ LQ+           +    QP++   S++   
Sbjct: 125 GPNFGFGFGGRQPHVNPGSLMIPPGGFHLQYQQQQQPQQQHQFQQQNQPYMFSLSSNNPG 184

Query: 181 -GGEFLQRLSAAKPGNGGVAADGFLMESAVSSQIPPAGASADSSNKSN 195
            G  FLQRL    P      +DGF++E A SSQ+PP+   + + N+SN
Sbjct: 185 AGDLFLQRL-GGNPRPNMEGSDGFVVEGA-SSQVPPSRTPSSNENRSN 230

[Close]

BLAST of CmaCh16G004950 vs. NCBI nr
Match: gi|763775772|gb|KJB42895.1| (hypothetical protein B456_007G173300 [Gossypium raimondii])

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 101/235 (42.98%), Postives = 117/235 (49.79%), Query Frame = 1


Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSD-----------------AIAS 60
           MS P DW QFY   L     P      TSE +F D+ SD                 ++ S
Sbjct: 1   MSTPTDWPQFYDHALSNQEIPNRVRILTSESVFGDQGSDTAVLTTPTVTSSSAPLSSLGS 60

Query: 61  ANTGASTG--LNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFAS 120
              G S+G  L+PE RV KPVRRRSR SRRTPTTLLNTDTTNFRAMVQQFTGGP+ PFA 
Sbjct: 61  GLGGGSSGGHLSPEGRVGKPVRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPSAPFAG 120

Query: 121 SI----SPNFSLGFGAIPQ-----SNSGLISPPSGYPLQF----------YHHNPQPFVI 180
                  PNF  GFG   Q      N+ L+ PP+G+ LQ+           HH  QP + 
Sbjct: 121 GAPHHGGPNFGYGFGTRHQPHNSNPNNPLMLPPTGFHLQYQQQQQHQNQLIHHQNQPLMF 180

Query: 181 P------ASAHGGEFLQRLSAAKPGNGGVAADGFLMESAVSSQIPPAGASADSSN 192
                  + A G  F QRL       GGV   G    S  SSQ+P +  S  SSN
Sbjct: 181 SLNSNDNSPAPGELFFQRLGV----GGGVNMQG----SDASSQVPASRTSTSSSN 227

The following BLAST results are available for this feature:

BLAST of CmaCh16G004950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ22_ARATH	8.1e-15	43.57	VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1	[more]

BLAST of CmaCh16G004950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV74_CUCSA	7.8e-65	71.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056730 PE=4 SV=1	[more]
A0A061DLC3_THECC	3.5e-33	46.49	Uncharacterized protein OS=Theobroma cacao GN=TCM_002034 PE=4 SV=1	[more]
A0A0D2TGR0_GOSRA	1.1e-26	42.98	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G173300 PE=4 SV=1	[more]
W9REZ9_9ROSA	1.6e-25	41.42	Uncharacterized protein OS=Morus notabilis GN=L484_009324 PE=4 SV=1	[more]
B9HCD7_POPTR	6.0e-25	48.41	VQ motif-containing family protein OS=Populus trichocarpa GN=POPTR_0006s00810g P...	[more]

BLAST of CmaCh16G004950 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15120.1	2.7e-16	38.61	VQ motif-containing protein	[more]
AT3G22160.1	4.6e-16	43.57	VQ motif-containing protein	[more]
AT4G39720.1	6.4e-10	39.22	VQ motif-containing protein	[more]
AT5G65170.1	1.6e-08	35.95	VQ motif-containing protein	[more]
AT1G35830.1	2.0e-08	40.00	VQ motif-containing protein	[more]

BLAST of CmaCh16G004950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101968\|ref\|XP_008451884.1\|	1.8e-78	78.43	PREDICTED: uncharacterized protein LOC103493042 [Cucumis melo]	[more]
gi\|778691256\|ref\|XP_011653250.1\|	3.1e-75	75.24	PREDICTED: VQ motif-containing protein 22-like [Cucumis sativus]	[more]
gi\|700198327\|gb\|KGN53485.1\|	1.1e-64	71.57	hypothetical protein Csa_4G056730 [Cucumis sativus]	[more]
gi\|590711222\|ref\|XP_007049045.1\|	5.0e-33	46.49	Uncharacterized protein TCM_002034 [Theobroma cacao]	[more]
gi\|763775772\|gb\|KJB42895.1\|	1.6e-26	42.98	hypothetical protein B456_007G173300 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004950.1	CmaCh16G004950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 71..98 score: 4.6
None	No IPR available	PANTHER	PTHR33179	FAMILY NOT NAMED	coord: 1..139 score: 8.7
None	No IPR available	PANTHER	PTHR33179:SF7	GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MKA23	coord: 1..139 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G004950	Cucsa.180120	Cucumber (Gy14) v1	cgycmaB0511
CmaCh16G004950	Cla005447	Watermelon (97103) v1	cmawmB308
CmaCh16G004950	Csa4G056730	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G004950	MELO3C016231	Melon (DHL92) v3.5.1	cmameB305
CmaCh16G004950	ClCG07G010990	Watermelon (Charleston Gray)	cmawcgB300
CmaCh16G004950	CSPI04G07050	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G004950	CmoCh04G006510	Cucurbita moschata (Rifu)	cmacmoB340
CmaCh16G004950	Lsi07G007880	Bottle gourd (USVL1VR-Ls)	cmalsiB325
CmaCh16G004950	Cp4.1LG01g01160	Cucurbita pepo (Zucchini)	cmacpeB353
CmaCh16G004950	Cp4.1LG14g03000	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G004950	MELO3C016231.2	Melon (DHL92) v3.6.1	cmamedB356
CmaCh16G004950	CsaV3_4G032360	Cucumber (Chinese Long) v3	cmacucB0392
CmaCh16G004950	CsaV3_4G007280	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G004950	Cla97C07G137730	Watermelon (97103) v2	cmawmbB350
CmaCh16G004950	Bhi01G002369	Wax gourd	cmawgoB0437
CmaCh16G004950	CsGy4G006970	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G004950	Carg11411	Silver-seed gourd	carcmaB0924
CmaCh16G004950	Carg13137	Silver-seed gourd	carcmaB0052

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G004950	CmaCh04G006070	Cucurbita maxima (Rimu)	cmacmaB353

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G004950	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G004950	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G004950	Melon (DHL92) v3.6.1	cmamedB351