Lsi06G008030 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G008030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Mitochondrial import inner membrane translocase subunit tim23, putative
Location	chr06 : 16786457 .. 16787008 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACTCGTCTCTATCATCCCTACCAAGACCTGCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCGTTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGAGCGGCCGAGCCCGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCCCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAGGCGGCTTCAGGGCCTAGGTCGGCTGCCATCGCCGGTGCCATTGGAGGGATTGCCGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

mRNA sequence

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACTCGTCTCTATCATCCCTACCAAGACCTGCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCGTTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGAGCGGCCGAGCCCGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCCCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAGGCGGCTTCAGGGCCTAGGTCGGCTGCCATCGCCGGTGCCATTGGAGGGATTGCCGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

Coding sequence (CDS)

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACTCGTCTCTATCATCCCTACCAAGACCTGCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCGTTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGAGCGGCCGAGCCCGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCCCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAGGCGGCTTCAGGGCCTAGGTCGGCTGCCATCGCCGGTGCCATTGGAGGGATTGCCGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

Protein sequence

MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI

Homology

[Close]

BLAST of Lsi06G008030 vs. Swiss-Prot
Match: TI232_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.8e-53
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 1


Query: 5   SKSADDRKTRLYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 64
           S    D  TRLY+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG 
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 65  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 124
            YL G+V G + G + G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 125 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 184
           SG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

[Close]

BLAST of Lsi06G008030 vs. Swiss-Prot
Match: TI233_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-52
Identity = 104/184 (56.52%), Postives = 141/184 (76.63%), Query Frame = 1


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S+     +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
            GY +G+VLG  +G++ G+RAAE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLR-GTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           ESGV ++R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAVAG++ VKR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of Lsi06G008030 vs. Swiss-Prot
Match: TI231_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.3e-52
Identity = 107/182 (58.79%), Postives = 134/182 (73.63%), Query Frame = 1


Query: 4   SSKSADDRKTRLYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           SS    D  TRLYHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 123
           GYL+G+V G + G   G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of Lsi06G008030 vs. Swiss-Prot
Match: TIM23_SCHPO (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim23 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-16
Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 1


Query: 17  HPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAVLGGARGSV 76
           HP  DL  P+  L     A   L  +  A P R W ++L Y TG  YLSG  +GG  G  
Sbjct: 45  HPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLN 104

Query: 77  QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNS 136
           +G++  +   S +LRLN +LN   + G   GNSLG+L L++ G+ S + + R      NS
Sbjct: 105 EGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENS 164

Query: 137 IVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQA 177
           + AG  TGALYK+  G R+ AI+ ++   AA      K++
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSLVATAAGIWTLAKRS 204

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BLAST of Lsi06G008030 vs. TrEMBL
Match: A0A0A0M0I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690355 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 3.7e-90
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 1


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRK+R YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lsi06G008030 vs. TrEMBL
Match: A0A059D310_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01693 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.1e-73
Identity = 142/180 (78.89%), Postives = 161/180 (89.44%), Query Frame = 1


Query: 4   SSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGY 63
           S    + RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG GY
Sbjct: 8   SGDPEEGRKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSGY 67

Query: 64  LSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESG 123
           L+GA+ GGARG++ GLR+AEPGDS+KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG
Sbjct: 68  LAGALAGGARGTLDGLRSAEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLESG 127

Query: 124 VIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 183
           ++H RGTDD+LNS+ AGLGTGALYKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 128 LVHWRGTDDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 187

[Close]

BLAST of Lsi06G008030 vs. TrEMBL
Match: A0A0L9VJC2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g097000 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.1e-73
Identity = 142/182 (78.02%), Postives = 160/182 (87.91%), Query Frame = 1


Query: 2   EDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 61
           + SS S D   TRLYHPY+DL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYTG 
Sbjct: 3   DSSSNSKDKNNTRLYHPYKDLNVPIQKLYNLPTAPEHLFSEEAARTHRSWGDNLQYYTGT 62

Query: 62  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 121
            YLSGA++G  RG+VQGLR AE GDS+K+RLNRVLNSGG  GR+ GNSLG+LGLIFAGLE
Sbjct: 63  AYLSGAIIGATRGTVQGLREAESGDSLKIRLNRVLNSGGHAGRKLGNSLGVLGLIFAGLE 122

Query: 122 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 181
           SG+IH RGTDD++NS VAGLGTGALY+AA+GPRSAAIAGAIGGIAAAAAV GKQA+KRY+
Sbjct: 123 SGMIHARGTDDLVNSAVAGLGTGALYRAAAGPRSAAIAGAIGGIAAAAAVGGKQALKRYI 182

Query: 182 PI 184
           PI
Sbjct: 183 PI 184

[Close]

BLAST of Lsi06G008030 vs. TrEMBL
Match: A0A0S3SQ47_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G163400 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.1e-73
Identity = 142/182 (78.02%), Postives = 160/182 (87.91%), Query Frame = 1


Query: 2   EDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 61
           + SS S D   TRLYHPY+DL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYTG 
Sbjct: 3   DSSSNSKDKNNTRLYHPYKDLNVPIQKLYNLPTAPEHLFSEEAARTHRSWGDNLQYYTGT 62

Query: 62  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 121
            YLSGA++G  RG+VQGLR AE GDS+K+RLNRVLNSGG  GR+ GNSLG+LGLIFAGLE
Sbjct: 63  AYLSGAIIGATRGTVQGLREAESGDSLKIRLNRVLNSGGHAGRKLGNSLGVLGLIFAGLE 122

Query: 122 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 181
           SG+IH RGTDD++NS VAGLGTGALY+AA+GPRSAAIAGAIGGIAAAAAV GKQA+KRY+
Sbjct: 123 SGMIHARGTDDLVNSAVAGLGTGALYRAAAGPRSAAIAGAIGGIAAAAAVGGKQALKRYI 182

Query: 182 PI 184
           PI
Sbjct: 183 PI 184

[Close]

BLAST of Lsi06G008030 vs. TrEMBL
Match: V7BIL3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G186600g PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 9.1e-73
Identity = 144/182 (79.12%), Postives = 159/182 (87.36%), Query Frame = 1


Query: 2   EDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 61
           + SS S D   TR+YHPYQDL+VPI KLY LPTAPEHLF EEAAR HRSWGENLQYYTG 
Sbjct: 3   DSSSNSKDKNNTRVYHPYQDLNVPIQKLYNLPTAPEHLFPEEAARTHRSWGENLQYYTGT 62

Query: 62  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 121
            YLSGAV+G A G+VQGLR AE GDS+K+RLNRVLNSGG  GR+ GNSLG+LGLIFAGLE
Sbjct: 63  AYLSGAVIGAATGTVQGLREAESGDSLKIRLNRVLNSGGHAGRKFGNSLGVLGLIFAGLE 122

Query: 122 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 181
           SG+IH RGTDD++NS VAGLGTGALY+ A+GPRSAAIAGAIGGIAAAAAV GKQA+KRYV
Sbjct: 123 SGMIHARGTDDLVNSAVAGLGTGALYRGAAGPRSAAIAGAIGGIAAAAAVGGKQALKRYV 182

Query: 182 PI 184
           PI
Sbjct: 183 PI 184

[Close]

BLAST of Lsi06G008030 vs. TAIR10
Match: AT1G72750.1 (AT1G72750.1 translocase inner membrane subunit 23-2)

HSP 1 Score: 208.0 bits (528), Expect = 5.0e-54
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 1


Query: 5   SKSADDRKTRLYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 64
           S    D  TRLY+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG 
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 65  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 124
            YL G+V G + G + G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 125 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 184
           SG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

[Close]

BLAST of Lsi06G008030 vs. TAIR10
Match: AT3G04800.1 (AT3G04800.1 translocase inner membrane subunit 23-3)

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-53
Identity = 104/184 (56.52%), Postives = 141/184 (76.63%), Query Frame = 1


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S+     +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
            GY +G+VLG  +G++ G+RAAE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLR-GTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           ESGV ++R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAVAG++ VKR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of Lsi06G008030 vs. TAIR10
Match: AT1G17530.1 (AT1G17530.1 translocase of inner mitochondrial membrane 23)

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-53
Identity = 107/182 (58.79%), Postives = 134/182 (73.63%), Query Frame = 1


Query: 4   SSKSADDRKTRLYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           SS    D  TRLYHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 123
           GYL+G+V G + G   G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of Lsi06G008030 vs. NCBI nr
Match: gi|659125510|ref|XP_008462719.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 6.2e-91
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 1


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRKTR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lsi06G008030 vs. NCBI nr
Match: gi|449449545|ref|XP_004142525.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 5.3e-90
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 1


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRK+R YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lsi06G008030 vs. NCBI nr
Match: gi|702269720|ref|XP_010043240.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Eucalyptus grandis])

HSP 1 Score: 285.8 bits (730), Expect = 5.3e-74
Identity = 143/173 (82.66%), Postives = 161/173 (93.06%), Query Frame = 1


Query: 11  RKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAVLG 70
           RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EEA +PHRSWGENLQYYTG GYL+GA+ G
Sbjct: 15  RKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEEALKPHRSWGENLQYYTGSGYLAGALAG 74

Query: 71  GARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGT 130
           GARG++ GLR+AEPGDS+KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG++H RGT
Sbjct: 75  GARGTLDGLRSAEPGDSLKLRVNRVLNSGGQAGRRLGNSLGIVGLIFAGLESGLVHWRGT 134

Query: 131 DDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 184
           DD+LNS+ AGLGTGALYKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 135 DDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 187

[Close]

BLAST of Lsi06G008030 vs. NCBI nr
Match: gi|702265961|ref|XP_010041376.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like [Eucalyptus grandis])

HSP 1 Score: 282.7 bits (722), Expect = 4.5e-73
Identity = 142/180 (78.89%), Postives = 161/180 (89.44%), Query Frame = 1


Query: 4   SSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGY 63
           S    + RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG GY
Sbjct: 8   SGDPEEGRKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSGY 67

Query: 64  LSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESG 123
           L+GA+ GGARG++ GLR+AEPGDS+KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG
Sbjct: 68  LAGALAGGARGTLDGLRSAEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLESG 127

Query: 124 VIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 183
           ++H RGTDD+LNS+ AGLGTGALYKAA+GPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI
Sbjct: 128 LVHWRGTDDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 187

[Close]

BLAST of Lsi06G008030 vs. NCBI nr
Match: gi|920714990|gb|KOM55078.1| (hypothetical protein LR48_Vigan10g097000 [Vigna angularis])

HSP 1 Score: 282.3 bits (721), Expect = 5.9e-73
Identity = 142/182 (78.02%), Postives = 160/182 (87.91%), Query Frame = 1


Query: 2   EDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 61
           + SS S D   TRLYHPY+DL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYTG 
Sbjct: 3   DSSSNSKDKNNTRLYHPYKDLNVPIQKLYNLPTAPEHLFSEEAARTHRSWGDNLQYYTGT 62

Query: 62  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 121
            YLSGA++G  RG+VQGLR AE GDS+K+RLNRVLNSGG  GR+ GNSLG+LGLIFAGLE
Sbjct: 63  AYLSGAIIGATRGTVQGLREAESGDSLKIRLNRVLNSGGHAGRKLGNSLGVLGLIFAGLE 122

Query: 122 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 181
           SG+IH RGTDD++NS VAGLGTGALY+AA+GPRSAAIAGAIGGIAAAAAV GKQA+KRY+
Sbjct: 123 SGMIHARGTDDLVNSAVAGLGTGALYRAAAGPRSAAIAGAIGGIAAAAAVGGKQALKRYI 182

Query: 182 PI 184
           PI
Sbjct: 183 PI 184

The following BLAST results are available for this feature:

BLAST of Lsi06G008030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI232_ARATH	8.8e-53	58.79	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
TI233_ARATH	2.0e-52	56.52	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
TI231_ARATH	3.3e-52	58.79	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
TIM23_SCHPO	2.3e-16	36.88	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]

BLAST of Lsi06G008030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0I6_CUCSA	3.7e-90	95.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690355 PE=4 SV=1	[more]
A0A059D310_EUCGR	3.1e-73	78.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01693 PE=4 SV=1	[more]
A0A0L9VJC2_PHAAN	4.1e-73	78.02	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g097000 PE=4 SV=1	[more]
A0A0S3SQ47_PHAAN	4.1e-73	78.02	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G163400 PE=...	[more]
V7BIL3_PHAVU	9.1e-73	79.12	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G186600g PE=4 SV=1	[more]

BLAST of Lsi06G008030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72750.1	5.0e-54	58.79	translocase inner membrane subunit 23-2	[more]
AT3G04800.1	1.1e-53	56.52	translocase inner membrane subunit 23-3	[more]
AT1G17530.1	1.9e-53	58.79	translocase of inner mitochondrial membrane 23	[more]

BLAST of Lsi06G008030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125510\|ref\|XP_008462719.1\|	6.2e-91	96.17	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
gi\|449449545\|ref\|XP_004142525.1\|	5.3e-90	95.08	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
gi\|702269720\|ref\|XP_010043240.1\|	5.3e-74	82.66	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Euca...	[more]
gi\|702265961\|ref\|XP_010041376.1\|	4.5e-73	78.89	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like ...	[more]
gi\|920714990\|gb\|KOM55078.1\|	5.9e-73	78.02	hypothetical protein LR48_Vigan10g097000 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
biological_process	GO:0016114	terpenoid biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015266	protein channel activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G008030.1	Lsi06G008030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	PFAM	PF02466	Tim17	coord: 57..165 score: 7.7
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 1..183 score: 2.6E
None	No IPR available	PANTHER	PTHR15371:SF7	SUBFAMILY NOT NAMED	coord: 1..183 score: 2.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G008030	CSPI01G33690	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G008030	Cucsa.291760	Cucumber (Gy14) v1	cgylsiB473
Lsi06G008030	CmaCh10G010080	Cucurbita maxima (Rimu)	cmalsiB078
Lsi06G008030	CmaCh11G009860	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G008030	CmoCh10G010630	Cucurbita moschata (Rifu)	cmolsiB064
Lsi06G008030	CmoCh11G010050	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G008030	Cla003747	Watermelon (97103) v1	lsiwmB418
Lsi06G008030	MELO3C024672	Melon (DHL92) v3.5.1	lsimeB401
Lsi06G008030	ClCG06G009180	Watermelon (Charleston Gray)	lsiwcgB377
Lsi06G008030	MELO3C024672.2	Melon (DHL92) v3.6.1	lsimedB424
Lsi06G008030	Cla97C06G118950	Watermelon (97103) v2	lsiwmbB378
Lsi06G008030	Bhi02G001024	Wax gourd	lsiwgoB521
Lsi06G008030	Cp4.1LG05g08470	Cucurbita pepo (Zucchini)	cpelsiB627
Lsi06G008030	Cp4.1LG04g01900	Cucurbita pepo (Zucchini)	cpelsiB559
Lsi06G008030	CsGy1G032290	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G008030	Carg06121	Silver-seed gourd	carlsiB022
Lsi06G008030	Carg16484	Silver-seed gourd	carlsiB830
Lsi06G008030	CsaV3_1G045620	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G008030	Cucumber (Chinese Long) v2	culsiB058
Lsi06G008030	Watermelon (97103) v1	lsiwmB419