CmaCh11G009860 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G009860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Mitochondrial import inner membrane translocase subunit tim23, putative
Location	Cma_Chr11 : 5246207 .. 5246758 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCCCCCCAATCAGCCGGTTATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCCTTTTTGGCGGCGCCAGGGGATCTCTCCAGGGAATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAGGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTACTCATTTGAGAGGCTCTGATGATGTTTTGAATAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

mRNA sequence

ATGGAAGATTCCCCCCAATCAGCCGGTTATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCCTTTTTGGCGGCGCCAGGGGATCTCTCCAGGGAATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAGGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTACTCATTTGAGAGGCTCTGATGATGTTTTGAATAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

Coding sequence (CDS)

ATGGAAGATTCCCCCCAATCAGCCGGTTATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCCTTTTTGGCGGCGCCAGGGGATCTCTCCAGGGAATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAGGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTACTCATTTGAGAGGCTCTGATGATGTTTTGAATAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

Protein sequence

MEDSPQSAGYRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI

Homology

[Close]

BLAST of CmaCh11G009860 vs. Swiss-Prot
Match: TI233_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.3e-51
Identity = 99/174 (56.90%), Postives = 137/174 (78.74%), Query Frame = 1


Query: 11  RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFG 70
           +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG GY +G++ G
Sbjct: 15  QKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGSVLG 74

Query: 71  GARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLR-G 130
             +G++ G+RAAE G+++K+R NR+LNSGG V RR GN LG +GL+FA +ESGVT++R G
Sbjct: 75  AFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESGVTYMRDG 134

Query: 131 SDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
            D  L +++AGL TG +Y+AASGPRSA +AGA+GG+AA AAVAG++  KR+VPI
Sbjct: 135 DDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVPI 188

[Close]

BLAST of CmaCh11G009860 vs. Swiss-Prot
Match: TI232_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.2e-51
Identity = 103/174 (59.20%), Postives = 130/174 (74.71%), Query Frame = 1


Query: 13  TRFYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALF 72
           TR Y+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG  YL G++ 
Sbjct: 15  TRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAYLGGSVA 74

Query: 73  GGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRG 132
           G + G + G+++ E GDT KL++NR+LNS GQ GR  GN +GI+GL++AG+ESG+     
Sbjct: 75  GASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVAATD 134

Query: 133 SDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
            DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ  KRYVPI
Sbjct: 135 RDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVPI 188

[Close]

BLAST of CmaCh11G009860 vs. Swiss-Prot
Match: TI231_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.4e-50
Identity = 104/173 (60.12%), Postives = 129/173 (74.57%), Query Frame = 1


Query: 13  TRFYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFG 72
           TR YHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG GYL+G++ G
Sbjct: 15  TRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTGYLAGSVAG 74

Query: 73  GARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGS 132
            + G   GI++ E GDT KL++NR+LNS GQ GR  GN +GI+GLI+AG+ESGV  +   
Sbjct: 75  ASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESGVVAVTDK 134

Query: 133 DDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
           DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY  I
Sbjct: 135 DDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYAHI 187

[Close]

BLAST of CmaCh11G009860 vs. Swiss-Prot
Match: TIM23_SCHPO (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim23 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-15
Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = 1


Query: 17  HPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFGGARGSL 76
           HP  DL  P+  L     A   L  +  A P R W ++L Y TG  YLSG   GG  G  
Sbjct: 45  HPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLN 104

Query: 77  QGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGSDDVLNS 136
           +G++  +   + +LRLN +LN   + G   GNSLG+L L++ G+ S + + R      NS
Sbjct: 105 EGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENS 164

Query: 137 IVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQA 177
           + AG  TGA+YK+  G R+ AI+ ++   AA      K++
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSLVATAAGIWTLAKRS 204

[Close]

BLAST of CmaCh11G009860 vs. TrEMBL
Match: A0A0A0M0I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690355 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 2.9e-87
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 1


Query: 1   MEDSPQSAGYRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S   RK+RFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGALFGGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180
           ESGV HLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of CmaCh11G009860 vs. TrEMBL
Match: A0A059D310_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01693 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.7e-71
Identity = 138/173 (79.77%), Postives = 157/173 (90.75%), Query Frame = 1


Query: 11  RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFG 70
           RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG GYL+GAL G
Sbjct: 15  RKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSGYLAGALAG 74

Query: 71  GARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGS 130
           GARG+L G+R+AEPGD++KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG+ H RG+
Sbjct: 75  GARGTLDGLRSAEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLESGLVHWRGT 134

Query: 131 DDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
           DD+LNS+ AGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQA KRYVPI
Sbjct: 135 DDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 187

[Close]

BLAST of CmaCh11G009860 vs. TrEMBL
Match: I1NIP2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G223900 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.2e-70
Identity = 137/182 (75.27%), Postives = 159/182 (87.36%), Query Frame = 1


Query: 2   EDSPQSAGYRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 61
           + S  S  +  TR YHPYQDL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYTG 
Sbjct: 3   DSSSNSKDHHNTRVYHPYQDLNVPIQKLYNLPTAPEHLFPEEAARTHRSWGDNLQYYTGS 62

Query: 62  GYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 121
           GYL+GA+ G ARG++QG+R AE  D++K+RLNRVLNSGG  GRR GNSLG++GLIFAGLE
Sbjct: 63  GYLAGAITGAARGTVQGLREAESADSLKIRLNRVLNSGGLAGRRLGNSLGVVGLIFAGLE 122

Query: 122 SGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYV 181
           SG+THLRG+DD++NS VAGLGTGA+Y+AA+GP+SAAIAGAIGGIAAAAAVAGKQA KRYV
Sbjct: 123 SGMTHLRGTDDLVNSAVAGLGTGALYRAAAGPQSAAIAGAIGGIAAAAAVAGKQALKRYV 182

Query: 182 PI 184
           PI
Sbjct: 183 PI 184

[Close]

BLAST of CmaCh11G009860 vs. TrEMBL
Match: I1LBK4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G161100 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 4.2e-70
Identity = 136/182 (74.73%), Postives = 159/182 (87.36%), Query Frame = 1


Query: 2   EDSPQSAGYRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 61
           + S  S  +  TR YHPYQDL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYTG 
Sbjct: 3   DSSSNSKDHHNTRVYHPYQDLNVPIQKLYNLPTAPEHLFPEEAARTHRSWGDNLQYYTGS 62

Query: 62  GYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 121
           GYL+GAL G ARG++QG+R AE GD++K+RLNRVLNSGG  GRR GNSLG++GLIFAGLE
Sbjct: 63  GYLAGALIGAARGTVQGLREAESGDSLKIRLNRVLNSGGHAGRRLGNSLGVVGLIFAGLE 122

Query: 122 SGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYV 181
           SG+T+LRG+DD++NS VAGLGTG +++AA+GPRSAAIAGAIGGIAAAAAV+GKQA KRYV
Sbjct: 123 SGMTYLRGTDDLVNSAVAGLGTGTLFRAAAGPRSAAIAGAIGGIAAAAAVSGKQALKRYV 182

Query: 182 PI 184
           PI
Sbjct: 183 PI 184

[Close]

BLAST of CmaCh11G009860 vs. TrEMBL
Match: W9QSU9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006162 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.5e-70
Identity = 134/173 (77.46%), Postives = 155/173 (89.60%), Query Frame = 1


Query: 11  RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFG 70
           + TR Y+PYQDL VPI  LY LPTA EHLF EEA++P RSWGENLQYYTG GYLSGA+ G
Sbjct: 12  QSTRLYNPYQDLQVPIQNLYNLPTAHEHLFIEEASKPSRSWGENLQYYTGCGYLSGAIMG 71

Query: 71  GARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGS 130
           GA+GS++G+++AEPGDT+KLR+NRVLNSGG VGRR GN+ G+LGLIFAGLE+GV H RG 
Sbjct: 72  GAKGSIEGLKSAEPGDTLKLRVNRVLNSGGHVGRRFGNTFGVLGLIFAGLENGVIHFRGR 131

Query: 131 DDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
           DD+LN++VAGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQ AKRYVPI
Sbjct: 132 DDLLNTVVAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQVAKRYVPI 184

[Close]

BLAST of CmaCh11G009860 vs. TAIR10
Match: AT3G04800.1 (AT3G04800.1 translocase inner membrane subunit 23-3)

HSP 1 Score: 201.8 bits (512), Expect = 3.6e-52
Identity = 99/174 (56.90%), Postives = 137/174 (78.74%), Query Frame = 1


Query: 11  RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFG 70
           +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG GY +G++ G
Sbjct: 15  QKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGSVLG 74

Query: 71  GARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLR-G 130
             +G++ G+RAAE G+++K+R NR+LNSGG V RR GN LG +GL+FA +ESGVT++R G
Sbjct: 75  AFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESGVTYMRDG 134

Query: 131 SDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
            D  L +++AGL TG +Y+AASGPRSA +AGA+GG+AA AAVAG++  KR+VPI
Sbjct: 135 DDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVPI 188

[Close]

BLAST of CmaCh11G009860 vs. TAIR10
Match: AT1G72750.1 (AT1G72750.1 translocase inner membrane subunit 23-2)

HSP 1 Score: 201.4 bits (511), Expect = 4.6e-52
Identity = 103/174 (59.20%), Postives = 130/174 (74.71%), Query Frame = 1


Query: 13  TRFYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALF 72
           TR Y+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG  YL G++ 
Sbjct: 15  TRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAYLGGSVA 74

Query: 73  GGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRG 132
           G + G + G+++ E GDT KL++NR+LNS GQ GR  GN +GI+GL++AG+ESG+     
Sbjct: 75  GASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVAATD 134

Query: 133 SDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
            DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ  KRYVPI
Sbjct: 135 RDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVPI 188

[Close]

BLAST of CmaCh11G009860 vs. TAIR10
Match: AT1G17530.1 (AT1G17530.1 translocase of inner mitochondrial membrane 23)

HSP 1 Score: 200.7 bits (509), Expect = 7.9e-52
Identity = 104/173 (60.12%), Postives = 129/173 (74.57%), Query Frame = 1


Query: 13  TRFYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFG 72
           TR YHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG GYL+G++ G
Sbjct: 15  TRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTGYLAGSVAG 74

Query: 73  GARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGS 132
            + G   GI++ E GDT KL++NR+LNS GQ GR  GN +GI+GLI+AG+ESGV  +   
Sbjct: 75  ASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESGVVAVTDK 134

Query: 133 DDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
           DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY  I
Sbjct: 135 DDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYAHI 187

[Close]

BLAST of CmaCh11G009860 vs. NCBI nr
Match: gi|449449545|ref|XP_004142525.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 4.2e-87
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 1


Query: 1   MEDSPQSAGYRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S   RK+RFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGALFGGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180
           ESGV HLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of CmaCh11G009860 vs. NCBI nr
Match: gi|659125510|ref|XP_008462719.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo])

HSP 1 Score: 328.6 bits (841), Expect = 7.1e-87
Identity = 168/183 (91.80%), Postives = 176/183 (96.17%), Query Frame = 1


Query: 1   MEDSPQSAGYRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S   RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGAL GGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180
           ESGV HLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of CmaCh11G009860 vs. NCBI nr
Match: gi|702269720|ref|XP_010043240.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Eucalyptus grandis])

HSP 1 Score: 280.8 bits (717), Expect = 1.7e-72
Identity = 140/173 (80.92%), Postives = 159/173 (91.91%), Query Frame = 1


Query: 11  RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFG 70
           RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EEA +PHRSWGENLQYYTG GYL+GAL G
Sbjct: 15  RKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEEALKPHRSWGENLQYYTGSGYLAGALAG 74

Query: 71  GARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGS 130
           GARG+L G+R+AEPGD++KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG+ H RG+
Sbjct: 75  GARGTLDGLRSAEPGDSLKLRVNRVLNSGGQAGRRLGNSLGIVGLIFAGLESGLVHWRGT 134

Query: 131 DDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
           DD+LNS+ AGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQA KRYVPI
Sbjct: 135 DDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 187

[Close]

BLAST of CmaCh11G009860 vs. NCBI nr
Match: gi|702265961|ref|XP_010041376.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like [Eucalyptus grandis])

HSP 1 Score: 276.9 bits (707), Expect = 2.5e-71
Identity = 138/173 (79.77%), Postives = 157/173 (90.75%), Query Frame = 1


Query: 11  RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALFG 70
           RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG GYL+GAL G
Sbjct: 15  RKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSGYLAGALAG 74

Query: 71  GARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVTHLRGS 130
           GARG+L G+R+AEPGD++KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLESG+ H RG+
Sbjct: 75  GARGTLDGLRSAEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLESGLVHWRGT 134

Query: 131 DDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
           DD+LNS+ AGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQA KRYVPI
Sbjct: 135 DDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 187

[Close]

BLAST of CmaCh11G009860 vs. NCBI nr
Match: gi|356576688|ref|XP_003556462.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-3-like [Glycine max])

HSP 1 Score: 272.7 bits (696), Expect = 4.7e-70
Identity = 137/182 (75.27%), Postives = 159/182 (87.36%), Query Frame = 1


Query: 2   EDSPQSAGYRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 61
           + S  S  +  TR YHPYQDL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYTG 
Sbjct: 3   DSSSNSKDHHNTRVYHPYQDLNVPIQKLYNLPTAPEHLFPEEAARTHRSWGDNLQYYTGS 62

Query: 62  GYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 121
           GYL+GA+ G ARG++QG+R AE  D++K+RLNRVLNSGG  GRR GNSLG++GLIFAGLE
Sbjct: 63  GYLAGAITGAARGTVQGLREAESADSLKIRLNRVLNSGGLAGRRLGNSLGVVGLIFAGLE 122

Query: 122 SGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYV 181
           SG+THLRG+DD++NS VAGLGTGA+Y+AA+GP+SAAIAGAIGGIAAAAAVAGKQA KRYV
Sbjct: 123 SGMTHLRGTDDLVNSAVAGLGTGALYRAAAGPQSAAIAGAIGGIAAAAAVAGKQALKRYV 182

Query: 182 PI 184
           PI
Sbjct: 183 PI 184

The following BLAST results are available for this feature:

BLAST of CmaCh11G009860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI233_ARATH	6.3e-51	56.90	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
TI232_ARATH	8.2e-51	59.20	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
TI231_ARATH	1.4e-50	60.12	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
TIM23_SCHPO	1.9e-15	35.63	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]

BLAST of CmaCh11G009860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0I6_CUCSA	2.9e-87	91.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690355 PE=4 SV=1	[more]
A0A059D310_EUCGR	1.7e-71	79.77	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01693 PE=4 SV=1	[more]
I1NIP2_SOYBN	3.2e-70	75.27	Uncharacterized protein OS=Glycine max GN=GLYMA_20G223900 PE=4 SV=1	[more]
I1LBK4_SOYBN	4.2e-70	74.73	Uncharacterized protein OS=Glycine max GN=GLYMA_10G161100 PE=4 SV=1	[more]
W9QSU9_9ROSA	5.5e-70	77.46	Uncharacterized protein OS=Morus notabilis GN=L484_006162 PE=4 SV=1	[more]

BLAST of CmaCh11G009860 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04800.1	3.6e-52	56.90	translocase inner membrane subunit 23-3	[more]
AT1G72750.1	4.6e-52	59.20	translocase inner membrane subunit 23-2	[more]
AT1G17530.1	7.9e-52	60.12	translocase of inner mitochondrial membrane 23	[more]

BLAST of CmaCh11G009860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449545\|ref\|XP_004142525.1\|	4.2e-87	91.80	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
gi\|659125510\|ref\|XP_008462719.1\|	7.1e-87	91.80	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
gi\|702269720\|ref\|XP_010043240.1\|	1.7e-72	80.92	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Euca...	[more]
gi\|702265961\|ref\|XP_010041376.1\|	2.5e-71	79.77	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like ...	[more]
gi\|356576688\|ref\|XP_003556462.1\|	4.7e-70	75.27	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-3-like ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016114	terpenoid biosynthetic process
biological_process	GO:0030150	protein import into mitochondrial matrix
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009860.1	CmaCh11G009860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	PFAM	PF02466	Tim17	coord: 57..165 score: 1.9
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 11..183 score: 1.8E
None	No IPR available	PANTHER	PTHR15371:SF7	SUBFAMILY NOT NAMED	coord: 11..183 score: 1.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G009860	Cucsa.291760	Cucumber (Gy14) v1	cgycmaB0816
CmaCh11G009860	MELO3C024672	Melon (DHL92) v3.5.1	cmameB109
CmaCh11G009860	ClCG06G009180	Watermelon (Charleston Gray)	cmawcgB137
CmaCh11G009860	CSPI01G33690	Wild cucumber (PI 183967)	cmacpiB090
CmaCh11G009860	CmoCh11G010050	Cucurbita moschata (Rifu)	cmacmoB112
CmaCh11G009860	CmoCh10G010630	Cucurbita moschata (Rifu)	cmacmoB109
CmaCh11G009860	Lsi06G008030	Bottle gourd (USVL1VR-Ls)	cmalsiB128
CmaCh11G009860	Cp4.1LG04g01900	Cucurbita pepo (Zucchini)	cmacpeB147
CmaCh11G009860	Cp4.1LG05g08470	Cucurbita pepo (Zucchini)	cmacpeB157
CmaCh11G009860	MELO3C024672.2	Melon (DHL92) v3.6.1	cmamedB117
CmaCh11G009860	CsaV3_1G045620	Cucumber (Chinese Long) v3	cmacucB0099
CmaCh11G009860	Cla97C06G118950	Watermelon (97103) v2	cmawmbB142
CmaCh11G009860	Bhi02G001024	Wax gourd	cmawgoB0169
CmaCh11G009860	CsGy1G032290	Cucumber (Gy14) v2	cgybcmaB027
CmaCh11G009860	Carg16484	Silver-seed gourd	carcmaB1252

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh11G009860	CmaCh10G010080	Cucurbita maxima (Rimu)	cmacmaB082

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G009860	Wax gourd	cmawgoB0106
CmaCh11G009860	Cucurbita maxima (Rimu)	cmacmaB077
CmaCh11G009860	Cucumber (Chinese Long) v2	cmacuB085
CmaCh11G009860	Cucurbita pepo (Zucchini)	cmacpeB164
CmaCh11G009860	Bottle gourd (USVL1VR-Ls)	cmalsiB098
CmaCh11G009860	Cucumber (Chinese Long) v3	cmacucB0131