Carg16484 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16484
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mitochondrial import inner membrane translocase subunit TIM23-like protein
Location	Cucurbita_argyrosperma_scaffold_130 : 917440 .. 917991 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCCCCGCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTTCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCATTTTTGGCGGCGCCAGGGGATCTCTCCAGGGCATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAAGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGCTCTGATGATGTTTTGAATAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

mRNA sequence

ATGGAAGATTCCCCGCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTTCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCATTTTTGGCGGCGCCAGGGGATCTCTCCAGGGCATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAAGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGCTCTGATGATGTTTTGAATAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

Coding sequence (CDS)

ATGGAAGATTCCCCGCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTTCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCATTTTTGGCGGCGCCAGGGGATCTCTCCAGGGCATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAAGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGCTCTGATGATGTTTTGAATAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

Protein sequence

MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI

Homology

[Close]

BLAST of Carg16484 vs. NCBI nr
Match: XP_022925513.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita moschata])

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDD 133
           ESGVIHLRGSDD
Sbjct: 121 ESGVIHLRGSDD 132

[Close]

BLAST of Carg16484 vs. NCBI nr
Match: XP_023531226.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.6 bits (688), Expect = 7.7e-69
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGA+FGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDD 133
           ESGV HLRGSDD
Sbjct: 121 ESGVTHLRGSDD 132

[Close]

BLAST of Carg16484 vs. NCBI nr
Match: XP_023002094.1 (mitochondrial import inner membrane translocase subunit TIM23-3-like [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 8.5e-68
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDSPQSAG RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSPQSAGYRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGA+FGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDD 133
           ESGV HLRGSDD
Sbjct: 121 ESGVTHLRGSDD 132

[Close]

BLAST of Carg16484 vs. NCBI nr
Match: XP_004142525.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis sativus] >KGN66799.1 hypothetical protein Csa_1G690355 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 7.4e-64
Identity = 120/132 (90.91%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S  DRK+RFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGA+FGGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDD 133
           ESGVIHLRGSDD
Sbjct: 121 ESGVIHLRGSDD 132

[Close]

BLAST of Carg16484 vs. NCBI nr
Match: XP_008462719.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 120/132 (90.91%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S  DRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDD 133
           ESGVIHLRGSDD
Sbjct: 121 ESGVIHLRGSDD 132

[Close]

BLAST of Carg16484 vs. TAIR10
Match: AT1G17530.1 (translocase of inner mitochondrial membrane 23)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-36
Identity = 71/131 (54.20%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 4   SPQSAGDRKTRFYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           S     D  TR YHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 123
           GYL+G++ G + G   GI++ E GDT KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGSDD 133
           SGV+ +   DD
Sbjct: 126 SGVVAVTDKDD 136

[Close]

BLAST of Carg16484 vs. TAIR10
Match: AT3G04800.1 (translocase inner membrane subunit 23-3)

HSP 1 Score: 147.5 bits (371), Expect = 8.0e-36
Identity = 68/132 (51.52%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S      +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
            GY +G++ G  +G++ G+RAAE G+++K+R NR+LNSGG V RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLRGSDD 133
           ESGV ++R  DD
Sbjct: 125 ESGVTYMRDGDD 136

[Close]

BLAST of Carg16484 vs. TAIR10
Match: AT1G72750.1 (translocase inner membrane subunit 23-2)

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-35
Identity = 68/126 (53.97%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 10  DRKTRFYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSG 69
           D  TR Y+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG  YL G
Sbjct: 12  DENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAYLGG 71

Query: 70  AIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVIH 129
           ++ G + G + G+++ E GDT KL++NR+LNS GQ GR  GN +GI+GL++AG+ESG++ 
Sbjct: 72  SVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVA 131

Query: 130 LRGSDD 133
               DD
Sbjct: 132 ATDRDD 137

[Close]

BLAST of Carg16484 vs. Swiss-Prot
Match: sp|Q9LNQ1|TI231_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana OX=3702 GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-35
Identity = 71/131 (54.20%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 4   SPQSAGDRKTRFYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           S     D  TR YHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 123
           GYL+G++ G + G   GI++ E GDT KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGSDD 133
           SGV+ +   DD
Sbjct: 126 SGVVAVTDKDD 136

[Close]

BLAST of Carg16484 vs. Swiss-Prot
Match: sp|Q9S837|TI233_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana OX=3702 GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 68/132 (51.52%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S      +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
            GY +G++ G  +G++ G+RAAE G+++K+R NR+LNSGG V RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLRGSDD 133
           ESGV ++R  DD
Sbjct: 125 ESGVTYMRDGDD 136

[Close]

BLAST of Carg16484 vs. Swiss-Prot
Match: sp|Q38820|TI232_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana OX=3702 GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.4e-34
Identity = 68/126 (53.97%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 10  DRKTRFYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSG 69
           D  TR Y+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG  YL G
Sbjct: 12  DENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAYLGG 71

Query: 70  AIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVIH 129
           ++ G + G + G+++ E GDT KL++NR+LNS GQ GR  GN +GI+GL++AG+ESG++ 
Sbjct: 72  SVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVA 131

Query: 130 LRGSDD 133
               DD
Sbjct: 132 ATDRDD 137

[Close]

BLAST of Carg16484 vs. Swiss-Prot
Match: sp|Q9USM7|TIM23_SCHPO (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim23 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-11
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 17  HPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAIFGGARGSL 76
           HP  DL  P+  L     A   L  +  A P R W ++L Y TG  YLSG   GG  G  
Sbjct: 45  HPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLN 104

Query: 77  QGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLES 123
           +G++  +   + +LRLN +LN   + G   GNSLG+L L++ G+ S
Sbjct: 105 EGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINS 150

[Close]

BLAST of Carg16484 vs. Swiss-Prot
Match: sp|P32897|TIM23_YEAST (Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIM23 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-08
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 47  PHRSWGENLQYYTGIGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRA 106
           P R W ++L Y TG  YL G   GG  G +QG++   P    KL+LN VLN   + G   
Sbjct: 89  PSRGWTDDLCYGTGAVYLLGLGIGGFSGMMQGLQNIPPNSPGKLQLNTVLNHITKRGPFL 148

Query: 107 GNSLGILGLIFAGLESGVIHLRGSDD 133
           GN+ GIL L +  + S +  LRG  D
Sbjct: 149 GNNAGILALSYNIINSTIDALRGKHD 174

[Close]

BLAST of Carg16484 vs. TrEMBL
Match: tr|A0A0A0M0I6|A0A0A0M0I6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690355 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 4.9e-64
Identity = 120/132 (90.91%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S  DRK+RFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGA+FGGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDD 133
           ESGVIHLRGSDD
Sbjct: 121 ESGVIHLRGSDD 132

[Close]

BLAST of Carg16484 vs. TrEMBL
Match: tr|A0A1S3CJ69|A0A1S3CJ69_CUCME (mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo OX=3656 GN=LOC103501018 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 8.4e-64
Identity = 120/132 (90.91%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S  DRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDD 133
           ESGVIHLRGSDD
Sbjct: 121 ESGVIHLRGSDD 132

[Close]

BLAST of Carg16484 vs. TrEMBL
Match: tr|A0A2P5ENG4|A0A2P5ENG4_9ROSA (Mitochondrial inner membrane translocase subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_170670 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.1e-51
Identity = 98/131 (74.81%), Postives = 112/131 (85.50%), Query Frame = 0


Query: 2   EDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 61
           + S  +  ++K R Y+PYQDL VPI  LY LPTAPEHLF EEA++PHRSWGENLQYYTG 
Sbjct: 3   DSSNHNHDEQKGRLYNPYQDLQVPIRNLYNLPTAPEHLFIEEASKPHRSWGENLQYYTGC 62

Query: 62  GYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 121
           GYLSGAI GGA+GS +G++AAEPGDT+KLR+NRVLNSGG VGRR GNSLG+LGLIFAGLE
Sbjct: 63  GYLSGAIIGGAKGSFEGLKAAEPGDTLKLRINRVLNSGGHVGRRYGNSLGVLGLIFAGLE 122

Query: 122 SGVIHLRGSDD 133
           SGVI LRG DD
Sbjct: 123 SGVIQLRGHDD 133

[Close]

BLAST of Carg16484 vs. TrEMBL
Match: tr|A0A2P5DKQ3|A0A2P5DKQ3_PARAD (Mitochondrial inner membrane translocase subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_054200 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 98/131 (74.81%), Postives = 112/131 (85.50%), Query Frame = 0


Query: 2   EDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 61
           + S  +  ++K R Y+PYQDL VPI  LY LPTAPEHLF EEA++PHRSWGENLQYYTG 
Sbjct: 3   DSSNHNHDEQKVRLYNPYQDLQVPIRNLYNLPTAPEHLFSEEASKPHRSWGENLQYYTGC 62

Query: 62  GYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 121
           GYLSGAI GGA+GS +G++AAEPGDT+KLR+NRVLNSGG VGRR GNSLG+LGLIFAGLE
Sbjct: 63  GYLSGAIIGGAKGSFEGLKAAEPGDTIKLRINRVLNSGGHVGRRYGNSLGVLGLIFAGLE 122

Query: 122 SGVIHLRGSDD 133
           SGVI LRG DD
Sbjct: 123 SGVIQLRGHDD 133

[Close]

BLAST of Carg16484 vs. TrEMBL
Match: tr|A0A059D310|A0A059D310_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B01693 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.6e-49
Identity = 95/130 (73.08%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 7   SAGD----RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIG 66
           S+GD    RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG G
Sbjct: 7   SSGDPEEGRKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSG 66

Query: 67  YLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLES 126
           YL+GA+ GGARG+L G+R+AEPGD++KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLES
Sbjct: 67  YLAGALAGGARGTLDGLRSAEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLES 126

Query: 127 GVIHLRGSDD 133
           G++H RG+DD
Sbjct: 127 GLVHWRGTDD 136

The following BLAST results are available for this feature:

BLAST of Carg16484 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925513.1	1.2e-69	100.00	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_023531226.1	7.7e-69	98.48	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_023002094.1	8.5e-68	97.73	mitochondrial import inner membrane translocase subunit TIM23-3-like [Cucurbita ...	[more]
XP_004142525.1	7.4e-64	90.91	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
XP_008462719.1	1.3e-63	90.91	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]

BLAST of Carg16484 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17530.1	1.2e-36	54.20	translocase of inner mitochondrial membrane 23	[more]
AT3G04800.1	8.0e-36	51.52	translocase inner membrane subunit 23-3	[more]
AT1G72750.1	1.4e-35	53.97	translocase inner membrane subunit 23-2	[more]

BLAST of Carg16484 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LNQ1\|TI231_ARATH	2.2e-35	54.20	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
sp\|Q9S837\|TI233_ARATH	1.4e-34	51.52	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
sp\|Q38820\|TI232_ARATH	2.4e-34	53.97	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
sp\|Q9USM7\|TIM23_SCHPO	6.5e-11	37.74	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]
sp\|P32897\|TIM23_YEAST	3.9e-08	40.70	Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces c...	[more]

BLAST of Carg16484 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0I6\|A0A0A0M0I6_CUCSA	4.9e-64	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690355 PE=4 SV=1	[more]
tr\|A0A1S3CJ69\|A0A1S3CJ69_CUCME	8.4e-64	90.91	mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo ...	[more]
tr\|A0A2P5ENG4\|A0A2P5ENG4_9ROSA	8.1e-51	74.81	Mitochondrial inner membrane translocase subunit OS=Trema orientalis OX=63057 GN...	[more]
tr\|A0A2P5DKQ3\|A0A2P5DKQ3_PARAD	1.1e-50	74.81	Mitochondrial inner membrane translocase subunit OS=Parasponia andersonii OX=347...	[more]
tr\|A0A059D310\|A0A059D310_EUCGR	7.6e-49	73.08	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B01693 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16484-RA	Carg16484-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 57..165 e-value: 6.7E-21 score: 74.5
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 5..183
None	No IPR available	PANTHER	PTHR15371:SF15	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-1-RELATED	coord: 5..183

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16484	MELO3C024672	Melon (DHL92) v3.5.1	carmeB0896
Carg16484	ClCG06G009180	Watermelon (Charleston Gray)	carwcgB0893
Carg16484	CSPI01G33690	Wild cucumber (PI 183967)	carcpiB0948
Carg16484	Cucsa.291760	Cucumber (Gy14) v1	carcgyB1031
Carg16484	CmaCh10G010080	Cucurbita maxima (Rimu)	carcmaB1251
Carg16484	CmaCh11G009860	Cucurbita maxima (Rimu)	carcmaB1252
Carg16484	CmoCh11G010050	Cucurbita moschata (Rifu)	carcmoB1222
Carg16484	CmoCh10G010630	Cucurbita moschata (Rifu)	carcmoB1221
Carg16484	Lsi06G008030	Bottle gourd (USVL1VR-Ls)	carlsiB830
Carg16484	Cp4.1LG05g08470	Cucurbita pepo (Zucchini)	carcpeB1262
Carg16484	Cp4.1LG04g01900	Cucurbita pepo (Zucchini)	carcpeB1261
Carg16484	CsGy1G032290	Cucumber (Gy14) v2	carcgybB0899
Carg16484	MELO3C024672.2	Melon (DHL92) v3.6.1	carmedB0904
Carg16484	CsaV3_1G045620	Cucumber (Chinese Long) v3	carcucB0949
Carg16484	Cla97C06G118950	Watermelon (97103) v2	carwmbB0958
Carg16484	Bhi02G001024	Wax gourd	carwgoB1057

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16484	Wax gourd	carwgoB1056
Carg16484	Cucumber (Chinese Long) v2	carcuB0927