CmoCh11G010050 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G010050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mitochondrial import inner membrane translocase subunit tim23, putative
Location	Cmo_Chr11 : 5390125 .. 5390676 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCCCCGCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTCCCGATCACCAAGCTTTACGAGCTCCCTACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCATTTTTGGCGGCGCCAGGGGATCTCTCCAGGGCATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAAGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGCTCTGATGATGTTTTGAACAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

mRNA sequence

ATGGAAGATTCCCCGCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTCCCGATCACCAAGCTTTACGAGCTCCCTACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCATTTTTGGCGGCGCCAGGGGATCTCTCCAGGGCATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAAGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGCTCTGATGATGTTTTGAACAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

Coding sequence (CDS)

ATGGAAGATTCCCCGCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTTCACGTCCCGATCACCAAGCTTTACGAGCTCCCTACCGCCCCAGAACATCTTTTCTTCGAAGAGGCGGCTAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGTGCCATTTTTGGCGGCGCCAGGGGATCTCTCCAGGGCATTAGGGCGGCGGAGCCTGGCGACACCATGAAGCTTCGTCTTAATCGAGTTTTGAACTCTGGGGGTCAAGTCGGCCGCAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGCTCTGATGATGTTTTGAACAGTATTGTTGCTGGATTGGGGACTGGTGCAATTTATAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCTGGTGCTATTGGAGGGATTGCTGCTGCAGCTGCGGTGGCGGGCAAGCAGGCAGCGAAGAGATATGTGCCAATATAG

Homology

[Close]

BLAST of CmoCh11G010050 vs. Swiss-Prot
Match: TI232_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.3e-52
Identity = 104/177 (58.76%), Postives = 132/177 (74.58%), Query Frame = 1


Query: 10  DRKTRFYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSG 69
           D  TR Y+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG  YL G
Sbjct: 12  DENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAYLGG 71

Query: 70  AIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVIH 129
           ++ G + G + G+++ E GDT KL++NR+LNS GQ GR  GN +GI+GL++AG+ESG++ 
Sbjct: 72  SVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVA 131

Query: 130 LRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
               DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ  KRYVPI
Sbjct: 132 ATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVPI 188

[Close]

BLAST of CmoCh11G010050 vs. Swiss-Prot
Match: TI231_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.4e-52
Identity = 106/182 (58.24%), Postives = 132/182 (72.53%), Query Frame = 1


Query: 4   SPQSAGDRKTRFYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           S     D  TR YHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 123
           GYL+G++ G + G   GI++ E GDT KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of CmoCh11G010050 vs. Swiss-Prot
Match: TI233_ARATH (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-50
Identity = 100/184 (54.35%), Postives = 138/184 (75.00%), Query Frame = 1


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S      +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
            GY +G++ G  +G++ G+RAAE G+++K+R NR+LNSGG V RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLR-GSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           ESGV ++R G D  L +++AGL TG +Y+AASGPRSA +AGA+GG+AA AAVAG++  KR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of CmoCh11G010050 vs. Swiss-Prot
Match: TIM23_SCHPO (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim23 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.3e-15
Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = 1


Query: 17  HPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAIFGGARGSL 76
           HP  DL  P+  L     A   L  +  A P R W ++L Y TG  YLSG   GG  G  
Sbjct: 45  HPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLN 104

Query: 77  QGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNS 136
           +G++  +   + +LRLN +LN   + G   GNSLG+L L++ G+ S + + R      NS
Sbjct: 105 EGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENS 164

Query: 137 IVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQA 177
           + AG  TGA+YK+  G R+ AI+ ++   AA      K++
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSLVATAAGIWTLAKRS 204

[Close]

BLAST of CmoCh11G010050 vs. TrEMBL
Match: A0A0A0M0I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690355 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.2e-88
Identity = 169/183 (92.35%), Postives = 179/183 (97.81%), Query Frame = 1


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S  DRK+RFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGA+FGGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180
           ESGVIHLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of CmoCh11G010050 vs. TrEMBL
Match: A0A059D310_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01693 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 4.5e-72
Identity = 140/181 (77.35%), Postives = 162/181 (89.50%), Query Frame = 1


Query: 7   SAGD----RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIG 66
           S+GD    RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG G
Sbjct: 7   SSGDPEEGRKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSG 66

Query: 67  YLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLES 126
           YL+GA+ GGARG+L G+R+AEPGD++KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLES
Sbjct: 67  YLAGALAGGARGTLDGLRSAEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLES 126

Query: 127 GVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVP 184
           G++H RG+DD+LNS+ AGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQA KRYVP
Sbjct: 127 GLVHWRGTDDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVP 186

[Close]

BLAST of CmoCh11G010050 vs. TrEMBL
Match: W9QSU9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006162 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.2e-71
Identity = 140/184 (76.09%), Postives = 161/184 (87.50%), Query Frame = 1


Query: 1   MEDSPQSAGDRK-TRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M D  +S  D + TR Y+PYQDL VPI  LY LPTA EHLF EEA++P RSWGENLQYYT
Sbjct: 1   MADFTKSNNDEQSTRLYNPYQDLQVPIQNLYNLPTAHEHLFIEEASKPSRSWGENLQYYT 60

Query: 61  GIGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAG 120
           G GYLSGAI GGA+GS++G+++AEPGDT+KLR+NRVLNSGG VGRR GN+ G+LGLIFAG
Sbjct: 61  GCGYLSGAIMGGAKGSIEGLKSAEPGDTLKLRVNRVLNSGGHVGRRFGNTFGVLGLIFAG 120

Query: 121 LESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           LE+GVIH RG DD+LN++VAGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQ AKR
Sbjct: 121 LENGVIHFRGRDDLLNTVVAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQVAKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of CmoCh11G010050 vs. TrEMBL
Match: A0A0S3SQ47_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G163400 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 7.2e-70
Identity = 137/184 (74.46%), Postives = 158/184 (85.87%), Query Frame = 1


Query: 1   MEDSPQSAGD-RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M DS  ++ D   TR YHPY+DL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYT
Sbjct: 1   MADSSSNSKDKNNTRLYHPYKDLNVPIQKLYNLPTAPEHLFSEEAARTHRSWGDNLQYYT 60

Query: 61  GIGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAG 120
           G  YLSGAI G  RG++QG+R AE GD++K+RLNRVLNSGG  GR+ GNSLG+LGLIFAG
Sbjct: 61  GTAYLSGAIIGATRGTVQGLREAESGDSLKIRLNRVLNSGGHAGRKLGNSLGVLGLIFAG 120

Query: 121 LESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           LESG+IH RG+DD++NS VAGLGTGA+Y+AA+GPRSAAIAGAIGGIAAAAAV GKQA KR
Sbjct: 121 LESGMIHARGTDDLVNSAVAGLGTGALYRAAAGPRSAAIAGAIGGIAAAAAVGGKQALKR 180

Query: 181 YVPI 184
           Y+PI
Sbjct: 181 YIPI 184

[Close]

BLAST of CmoCh11G010050 vs. TrEMBL
Match: A0A0L9VJC2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g097000 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 7.2e-70
Identity = 137/184 (74.46%), Postives = 158/184 (85.87%), Query Frame = 1


Query: 1   MEDSPQSAGD-RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M DS  ++ D   TR YHPY+DL+VPI KLY LPTAPEHLF EEAAR HRSWG+NLQYYT
Sbjct: 1   MADSSSNSKDKNNTRLYHPYKDLNVPIQKLYNLPTAPEHLFSEEAARTHRSWGDNLQYYT 60

Query: 61  GIGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAG 120
           G  YLSGAI G  RG++QG+R AE GD++K+RLNRVLNSGG  GR+ GNSLG+LGLIFAG
Sbjct: 61  GTAYLSGAIIGATRGTVQGLREAESGDSLKIRLNRVLNSGGHAGRKLGNSLGVLGLIFAG 120

Query: 121 LESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           LESG+IH RG+DD++NS VAGLGTGA+Y+AA+GPRSAAIAGAIGGIAAAAAV GKQA KR
Sbjct: 121 LESGMIHARGTDDLVNSAVAGLGTGALYRAAAGPRSAAIAGAIGGIAAAAAVGGKQALKR 180

Query: 181 YVPI 184
           Y+PI
Sbjct: 181 YIPI 184

[Close]

BLAST of CmoCh11G010050 vs. TAIR10
Match: AT1G72750.1 (AT1G72750.1 translocase inner membrane subunit 23-2)

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-53
Identity = 104/177 (58.76%), Postives = 132/177 (74.58%), Query Frame = 1


Query: 10  DRKTRFYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSG 69
           D  TR Y+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG  YL G
Sbjct: 12  DENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTAYLGG 71

Query: 70  AIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLESGVIH 129
           ++ G + G + G+++ E GDT KL++NR+LNS GQ GR  GN +GI+GL++AG+ESG++ 
Sbjct: 72  SVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIESGIVA 131

Query: 130 LRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVPI 184
               DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ  KRYVPI
Sbjct: 132 ATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVPI 188

[Close]

BLAST of CmoCh11G010050 vs. TAIR10
Match: AT1G17530.1 (AT1G17530.1 translocase of inner mitochondrial membrane 23)

HSP 1 Score: 205.7 bits (522), Expect = 2.5e-53
Identity = 106/182 (58.24%), Postives = 132/182 (72.53%), Query Frame = 1


Query: 4   SPQSAGDRKTRFYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           S     D  TR YHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLE 123
           GYL+G++ G + G   GI++ E GDT KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of CmoCh11G010050 vs. TAIR10
Match: AT3G04800.1 (AT3G04800.1 translocase inner membrane subunit 23-3)

HSP 1 Score: 201.1 bits (510), Expect = 6.1e-52
Identity = 100/184 (54.35%), Postives = 138/184 (75.00%), Query Frame = 1


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S      +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
            GY +G++ G  +G++ G+RAAE G+++K+R NR+LNSGG V RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLR-GSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           ESGV ++R G D  L +++AGL TG +Y+AASGPRSA +AGA+GG+AA AAVAG++  KR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of CmoCh11G010050 vs. NCBI nr
Match: gi|449449545|ref|XP_004142525.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 1.7e-88
Identity = 169/183 (92.35%), Postives = 179/183 (97.81%), Query Frame = 1


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S  DRK+RFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGA+FGGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180
           ESGVIHLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of CmoCh11G010050 vs. NCBI nr
Match: gi|659125510|ref|XP_008462719.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo])

HSP 1 Score: 333.2 bits (853), Expect = 2.9e-88
Identity = 169/183 (92.35%), Postives = 178/183 (97.27%), Query Frame = 1


Query: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+S +S  DRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QG+RAAEPGD++KLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180
           ESGVIHLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of CmoCh11G010050 vs. NCBI nr
Match: gi|702269720|ref|XP_010043240.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Eucalyptus grandis])

HSP 1 Score: 282.7 bits (722), Expect = 4.5e-73
Identity = 142/181 (78.45%), Postives = 164/181 (90.61%), Query Frame = 1


Query: 7   SAGD----RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIG 66
           S+GD    RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EEA +PHRSWGENLQYYTG G
Sbjct: 7   SSGDPEEVRKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEEALKPHRSWGENLQYYTGSG 66

Query: 67  YLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLES 126
           YL+GA+ GGARG+L G+R+AEPGD++KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLES
Sbjct: 67  YLAGALAGGARGTLDGLRSAEPGDSLKLRVNRVLNSGGQAGRRLGNSLGIVGLIFAGLES 126

Query: 127 GVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVP 184
           G++H RG+DD+LNS+ AGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQA KRYVP
Sbjct: 127 GLVHWRGTDDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVP 186

[Close]

BLAST of CmoCh11G010050 vs. NCBI nr
Match: gi|702265961|ref|XP_010041376.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like [Eucalyptus grandis])

HSP 1 Score: 278.9 bits (712), Expect = 6.5e-72
Identity = 140/181 (77.35%), Postives = 162/181 (89.50%), Query Frame = 1


Query: 7   SAGD----RKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIG 66
           S+GD    RKTR Y+PYQDLHVPI  LY+LPT+PE+LF EE  +PHRSWGE LQYYTG G
Sbjct: 7   SSGDPEEGRKTRPYNPYQDLHVPIKNLYDLPTSPEYLFHEETLKPHRSWGETLQYYTGSG 66

Query: 67  YLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGLES 126
           YL+GA+ GGARG+L G+R+AEPGD++KLR+NRVLNSGGQ GRR GNSLGI+GLIFAGLES
Sbjct: 67  YLAGALAGGARGTLDGLRSAEPGDSLKLRVNRVLNSGGQTGRRLGNSLGIVGLIFAGLES 126

Query: 127 GVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRYVP 184
           G++H RG+DD+LNS+ AGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQA KRYVP
Sbjct: 127 GLVHWRGTDDLLNSVAAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVP 186

[Close]

BLAST of CmoCh11G010050 vs. NCBI nr
Match: gi|703076108|ref|XP_010090256.1| (hypothetical protein L484_006162 [Morus notabilis])

HSP 1 Score: 276.6 bits (706), Expect = 3.2e-71
Identity = 140/184 (76.09%), Postives = 161/184 (87.50%), Query Frame = 1


Query: 1   MEDSPQSAGDRK-TRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           M D  +S  D + TR Y+PYQDL VPI  LY LPTA EHLF EEA++P RSWGENLQYYT
Sbjct: 1   MADFTKSNNDEQSTRLYNPYQDLQVPIQNLYNLPTAHEHLFIEEASKPSRSWGENLQYYT 60

Query: 61  GIGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAG 120
           G GYLSGAI GGA+GS++G+++AEPGDT+KLR+NRVLNSGG VGRR GN+ G+LGLIFAG
Sbjct: 61  GCGYLSGAIMGGAKGSIEGLKSAEPGDTLKLRVNRVLNSGGHVGRRFGNTFGVLGLIFAG 120

Query: 121 LESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKR 180
           LE+GVIH RG DD+LN++VAGLGTGA+YKAA+GPRSAAIAGAIGGIAAAAAVAGKQ AKR
Sbjct: 121 LENGVIHFRGRDDLLNTVVAGLGTGALYKAAAGPRSAAIAGAIGGIAAAAAVAGKQVAKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

The following BLAST results are available for this feature:

BLAST of CmoCh11G010050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI232_ARATH	3.3e-52	58.76	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
TI231_ARATH	4.4e-52	58.24	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
TI233_ARATH	1.1e-50	54.35	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
TIM23_SCHPO	3.3e-15	35.63	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]

BLAST of CmoCh11G010050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0I6_CUCSA	1.2e-88	92.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690355 PE=4 SV=1	[more]
A0A059D310_EUCGR	4.5e-72	77.35	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01693 PE=4 SV=1	[more]
W9QSU9_9ROSA	2.2e-71	76.09	Uncharacterized protein OS=Morus notabilis GN=L484_006162 PE=4 SV=1	[more]
A0A0S3SQ47_PHAAN	7.2e-70	74.46	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G163400 PE=...	[more]
A0A0L9VJC2_PHAAN	7.2e-70	74.46	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g097000 PE=4 SV=1	[more]

BLAST of CmoCh11G010050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72750.1	1.9e-53	58.76	translocase inner membrane subunit 23-2	[more]
AT1G17530.1	2.5e-53	58.24	translocase of inner mitochondrial membrane 23	[more]
AT3G04800.1	6.1e-52	54.35	translocase inner membrane subunit 23-3	[more]

BLAST of CmoCh11G010050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449545\|ref\|XP_004142525.1\|	1.7e-88	92.35	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
gi\|659125510\|ref\|XP_008462719.1\|	2.9e-88	92.35	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
gi\|702269720\|ref\|XP_010043240.1\|	4.5e-73	78.45	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Euca...	[more]
gi\|702265961\|ref\|XP_010041376.1\|	6.5e-72	77.35	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1-like ...	[more]
gi\|703076108\|ref\|XP_010090256.1\|	3.2e-71	76.09	hypothetical protein L484_006162 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016114	terpenoid biosynthetic process
biological_process	GO:0030150	protein import into mitochondrial matrix
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G010050.1	CmoCh11G010050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	PFAM	PF02466	Tim17	coord: 57..165 score: 2.9
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 1..183 score: 2.3E
None	No IPR available	PANTHER	PTHR15371:SF7	SUBFAMILY NOT NAMED	coord: 1..183 score: 2.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G010050	Cucsa.291760	Cucumber (Gy14) v1	cgycmoB0810
CmoCh11G010050	CmaCh10G010080	Cucurbita maxima (Rimu)	cmacmoB077
CmoCh11G010050	CmaCh11G009860	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G010050	MELO3C024672	Melon (DHL92) v3.5.1	cmomeB102
CmoCh11G010050	ClCG06G009180	Watermelon (Charleston Gray)	cmowcgB121
CmoCh11G010050	CSPI01G33690	Wild cucumber (PI 183967)	cmocpiB083
CmoCh11G010050	Lsi06G008030	Bottle gourd (USVL1VR-Ls)	cmolsiB118
CmoCh11G010050	Cp4.1LG04g01900	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G010050	Cp4.1LG05g08470	Cucurbita pepo (Zucchini)	cmocpeB133
CmoCh11G010050	MELO3C024672.2	Melon (DHL92) v3.6.1	cmomedB110
CmoCh11G010050	CsaV3_1G045620	Cucumber (Chinese Long) v3	cmocucB0090
CmoCh11G010050	Cla97C06G118950	Watermelon (97103) v2	cmowmbB125
CmoCh11G010050	Bhi02G001024	Wax gourd	cmowgoB0162
CmoCh11G010050	CsGy1G032290	Cucumber (Gy14) v2	cgybcmoB027
CmoCh11G010050	Carg16484	Silver-seed gourd	carcmoB1222

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G010050	CmoCh10G010630	Cucurbita moschata (Rifu)	cmocmoB047

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G010050	Bottle gourd (USVL1VR-Ls)	cmolsiB084
CmoCh11G010050	Cucumber (Chinese Long) v3	cmocucB0118
CmoCh11G010050	Wax gourd	cmowgoB0100
CmoCh11G010050	Cucurbita moschata (Rifu)	cmocmoB086
CmoCh11G010050	Cucurbita maxima (Rimu)	cmacmoB073
CmoCh11G010050	Cucumber (Chinese Long) v2	cmocuB075